TCONS_00015719 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015719
Unique NameTCONS_00015719
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015719 ID=TCONS_00015719|Name=TCONS_00015719|organism=Clytia hemisphaerica|type=transcript|length=582bp
ATATGAAAATCCagcttttttggtcaaaaacacccctttttccagttttt
ttcaGCTGGAAAATGTACCTTTCTCGAGCATTCACCCAAAGATCTATTTC
CCAGCCATAAGCGAATGCAAAATTATTACTTCTAGATTTTCAAATCTATC
TGGAAGGGGAGTGTTTTCCAAGCAAGAGGAATAGTTGTTTTGGCAAACGC
AAATgactaattactccacagcagttacctagagacaagataatttatca
tgtttttattggttattagttattcaaaagactgtcgcGTTCGCCAAAAC
ATCTACTATTAATTATATTCCTTCGTGACATTTTTCTCTAAACTTCTTCG
TTACTTTGAGCTCTATTCCTTAGTAACTTTCGTCTCaaatttcttcgtta
cttcaAATTTTATTCCTTTGTGACTTtcttttataatttctttgcaggca
tcgaaataagggatagaaagCGCATCGCACtttttttgataagcatgatt
ttgcatcctaaaatggatcaattttcaatttttagcttgtaagtaatcca
aaaacgcatCGCGAATTGCGAAATGCGATACG
Run BLAST on NCBI

transcript from alignment at sc0000215:124583..125164

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015719 ID=TCONS_00015719|Name=TCONS_00015719|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at sc0000215:124583..125164 (Clytia hemisphaerica)
CGTATCGCATTTCGCAATTCGCGatgcgtttttggattacttacaagcta
aaaattgaaaattgatccattttaggatgcaaaatcatgcttatcaaaaa
aaGTGCGATGCGctttctatcccttatttcgatgcctgcaaagaaattat
aaaagaAAGTCACAAAGGAATAAAATTtgaagtaacgaagaaatttGAGA
CGAAAGTTACTAAGGAATAGAGCTCAAAGTAACGAAGAAGTTTAGAGAAA
AATGTCACGAAGGAATATAATTAATAGTAGATGTTTTGGCGAACgcgaca
gtcttttgaataactaataaccaataaaaacatgataaattatcttgtct
ctaggtaactgctgtggagtaattagtcATTTGCGTTTGCCAAAACAACT
ATTCCTCTTGCTTGGAAAACACTCCCCTTCCAGATAGATTTGAAAATCTA
GAAGTAATAATTTTGCATTCGCTTATGGCTGGGAAATAGATCTTTGGGTG
AATGCTCGAGAAAGGTACATTTTCCAGCtgaaaaaaactggaaaaagggg
tgtttttgaccaaaaaagctGGATTTTCATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008773XLOC_008773Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015719-exon-sc0000215-1491911889:124583..125164TCONS_00015719-exon-sc0000215-1491911889:124583..125164Clytia hemisphaericaexon
TCONS_00015719-exon-sc0000215-1510915933:124583..125164TCONS_00015719-exon-sc0000215-1510915933:124583..125164Clytia hemisphaericaexon
TCONS_00015719-exon-sc0000215-1575043694:124583..125164TCONS_00015719-exon-sc0000215-1575043694:124583..125164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:124583..125164 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.561202	0.775743	1.10617	0.955388	1.2544	2.05171	1.00401	0.878366	0.71405	0.181491	0.898724	0.525081	0.706052	0.866534	0.610593	0.353641	0.452442	1.03549	0.349854	1.05803	0.792416	1.1261	0.617353	0.882705	0.687491	0.539887	0.744989	0	0.325209	0.53176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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