TCONS_00015720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015720
Unique NameTCONS_00015720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015720 ID=TCONS_00015720|Name=TCONS_00015720|organism=Clytia hemisphaerica|type=transcript|length=360bp
ATCCAATTCCATAGTCTTTCtgtcttaaaaacaaatataattgaGGTTTA
CAAATGATTTCAAAAGAGCTTCTGGCTGTTTCCACCATAAGGCACTTTAC
CTTGCATTGAAATAAACGTTGTTGTCAACctcaaaacttgctcaaataaC
AGATATTTCcttggaaaaagatttttagatgGTCAATAATGATATTTTGT
AAACCAAAGTCATCATATTTTTCTACCTTTGTCAAAATTATGCACAAAAC
TAATGTTAATCTCATTTTTGGAGCCATTTAATAAATGTCAACCTCAAATA
ACACCCTTCATAGCAATTTTCAACCCTTTGAGATAATTTCAGAGCTATAA
CATATCCAAA
Run BLAST on NCBI

transcript from alignment at sc0000215:126585..126944

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015720 ID=TCONS_00015720|Name=TCONS_00015720|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at sc0000215:126585..126944 (Clytia hemisphaerica)
TTTGGATATGTTATAGCTCTGAAATTATCTCAAAGGGTTGAAAATTGCTA
TGAAGGGTGTTATTTGAGGTTGACATTTATTAAATGGCTCCAAAAATGAG
ATTAACATTAGTTTTGTGCATAATTTTGACAAAGGTAGAAAAATATGATG
ACTTTGGTTTACAAAATATCATTATTGACcatctaaaaatctttttccaa
gGAAATATCTGttatttgagcaagttttgagGTTGACAACAACGTTTATT
TCAATGCAAGGTAAAGTGCCTTATGGTGGAAACAGCCAGAAGCTCTTTTG
AAATCATTTGTAAACCtcaattatatttgtttttaagacaGAAAGACTAT
GGAATTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008774XLOC_008774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015720-exon-sc0000215-1491911889:126585..126944TCONS_00015720-exon-sc0000215-1491911889:126585..126944Clytia hemisphaericaexon
TCONS_00015720-exon-sc0000215-1510915933:126585..126944TCONS_00015720-exon-sc0000215-1510915933:126585..126944Clytia hemisphaericaexon
TCONS_00015720-exon-sc0000215-1575043694:126585..126944TCONS_00015720-exon-sc0000215-1575043694:126585..126944Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:126585..126944 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.00019	1.14558	2.08992	2.48242	1.00544	0.660975	1.20827	0.565584	0.395979	0	0.238038	0.391381	0	0	0.133413	0	0	0.180781	0.499518	0	0.753336	0.823192	1.20128	0.539028	0.252257	1.22473	0.966497	0.836761	0.551551	1.3802
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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