TCONS_00015726 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015726
Unique NameTCONS_00015726
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015726 ID=TCONS_00015726|Name=TCONS_00015726|organism=Clytia hemisphaerica|type=transcript|length=526bp
atcagatGACAATtaattggagttttttgaaattcttaattAGGGCGACC
ACATAATGGATGCATAAGTTATAAAGTTTGGTCACTTATTTTTCGATTCG
ACTTTTAATTGGAAAAATACCTTTGAAAGTTGAATTTACGTCCGCTATCA
GCAGATCACAGCTGGTGAACGACTTGACTGTTGagttaaaaagagaaaac
aaaaagttCAACAAGGTAGACTACAAGGAAGAACGCTGTCTCTAAAAGAA
GGGTAATTCTGTAATAAAGCAATAACAATTAGGAATGTCTCATGTAATTT
CCTTAAGTGATACTTGTAATGTTTTTGTGTCTATACAGGTTTTGTTTcga
tattaaaatttcaaattaaattgtcgtataaaaaaattaagactGAGATC
TCAGCACCACAAGTGaaaaacggcaaaaaaaaattaaaacaagccCCCTG
TAGAGTTCTCCAACGCAGCCAGTATACAGAAACAGTACTCAGAATTTTCA
AACATATATTTCAATTAGACCgtgag
Run BLAST on NCBI

transcript from alignment at sc0000215:184390..184915

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015726 ID=TCONS_00015726|Name=TCONS_00015726|organism=Clytia hemisphaerica|type=transcript|length=526bp|location=Sequence derived from alignment at sc0000215:184390..184915 (Clytia hemisphaerica)
ctcacGGTCTAATTGAAATATATGTTTGAAAATTCTGAGTACTGTTTCTG
TATACTGGCTGCGTTGGAGAACTCTACAGGGggcttgttttaattttttt
ttgccgtttttCACTTGTGGTGCTGAGATCTCagtcttaatttttttata
cgacaatttaatttgaaattttaatatcgAAACAAAACCTGTATAGACAC
AAAAACATTACAAGTATCACTTAAGGAAATTACATGAGACATTCCTAATT
GTTATTGCTTTATTACAGAATTACCCTTCTTTTAGAGACAGCGTTCTTCC
TTGTAGTCTACCTTGTTGaactttttgttttctctttttaactCAACAGT
CAAGTCGTTCACCAGCTGTGATCTGCTGATAGCGGACGTAAATTCAACTT
TCAAAGGTATTTTTCCAATTAAAAGTCGAATCGAAAAATAAGTGACCAAA
CTTTATAACTTATGCATCCATTATGTGGTCGCCCTaattaagaatttcaa
aaaactccaattaATTGTCatctgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008780XLOC_008780Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015726-exon-sc0000215-1491911889:184390..184915TCONS_00015726-exon-sc0000215-1491911889:184390..184915Clytia hemisphaericaexon
TCONS_00015726-exon-sc0000215-1510915933:184390..184915TCONS_00015726-exon-sc0000215-1510915933:184390..184915Clytia hemisphaericaexon
TCONS_00015726-exon-sc0000215-1575043694:184390..184915TCONS_00015726-exon-sc0000215-1575043694:184390..184915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:184390..184915 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.111917	0.109137	0.380155	0.743845	0	0	0	0	0	0	0	0.149072	0.0744326	0	0.127101	0	0.252047	0	0.713823	0	0.108208	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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