TCONS_00015727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015727
Unique NameTCONS_00015727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015727 ID=TCONS_00015727|Name=TCONS_00015727|organism=Clytia hemisphaerica|type=transcript|length=304bp
CTCTTCCCATGGAAGCAAAGAGGTTTTTCTCCTTCACATGTAGAAAGAAA
AGGTCGTGAACCTTTTGACAGAAATTCTTACCGAAATGTAATGCGATCAT
GTCAACCGAATTAAAGATAAACATTCTGGGTTTTAATtcgtgtttttatt
ttgtttttattagaaaactAGAGTCTCGATTTGGGGTCGTTTTTTATCTG
TTCAAATGTCAAATCTAGGGAGTGATTCAACTTATATATCTAGGTCATCA
TCTTTTAACGTGTTGATGTAGAAAATCCTTTCAATTTTTAGTCCTAATTA
AAAT
Run BLAST on NCBI

transcript from alignment at sc0000215:217510..217813

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015727 ID=TCONS_00015727|Name=TCONS_00015727|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at sc0000215:217510..217813 (Clytia hemisphaerica)
ATTTTAATTAGGACTAAAAATTGAAAGGATTTTCTACATCAACACGTTAA
AAGATGATGACCTAGATATATAAGTTGAATCACTCCCTAGATTTGACATT
TGAACAGATAAAAAACGACCCCAAATCGAGACTCTagttttctaataaaa
acaaaataaaaacacgaATTAAAACCCAGAATGTTTATCTTTAATTCGGT
TGACATGATCGCATTACATTTCGGTAAGAATTTCTGTCAAAAGGTTCACG
ACCTTTTCTTTCTACATGTGAAGGAGAAAAACCTCTTTGCTTCCATGGGA
AGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008781XLOC_008781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015727-exon-sc0000215-1491911889:217510..217813TCONS_00015727-exon-sc0000215-1491911889:217510..217813Clytia hemisphaericaexon
TCONS_00015727-exon-sc0000215-1510915933:217510..217813TCONS_00015727-exon-sc0000215-1510915933:217510..217813Clytia hemisphaericaexon
TCONS_00015727-exon-sc0000215-1575043694:217510..217813TCONS_00015727-exon-sc0000215-1575043694:217510..217813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:217510..217813 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.373121	0	0	0	0.503174	0.397615	0	1.34728	0.943265	1.16839	0.756042	0.248496	0.248151	1.03083	0.635611	0.454738	0	0	0.396635	0	0.360754	0.52789	0	0.388944	0	0	0.511622	2.73009	0.414135	0.421938
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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