TCONS_00015729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015729
Unique NameTCONS_00015729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015729 ID=TCONS_00015729|Name=TCONS_00015729|organism=Clytia hemisphaerica|type=transcript|length=588bp
agcgtggtgggtcgactaaaattcgCGCAAACCGGGGaggcaattttaga
agattttggtTTTTGGCGCCCCCGATAAAAATTGAAcatgttttttaaaa
tttcgCGAGCGAAGCTagtattttttgagtattttctctcattttggccg
aaaactgccatatctaaggtgtaaaagagcaaaggggCGCTGCAATTAGT
AACAGAGGCGTCTTTTTGCGCCACTACGCTACTGTAGAGATTCTTCTATT
TTTCTCTCATTATTTAAATCTTTATATAAGATTTGTATTTGGTAAAATTC
TTCAAGCTGCCTTTTTTCTACCGGATATAAAAGCAGTGACATTCTAAAGT
AGACATGACAAAACCGTTTTCAACATTTTGCAGGAAATACCTTTCCCTTA
ACAAATCTACCaagtgtttgtttttatttgtggTACATAGTCACAGCATA
CGCAACACACTCTTCTGAACATGAAAGAGCTCTTTGTTCTATTTTTGAGA
GGCTTTACTGTGAGTAAGCTTCACTCATCTTTGATATATGATTCATTCAA
AATCAAATATAGATTAATTTTTGAGACAGAAATTCAAC
Run BLAST on NCBI

transcript from alignment at sc0000215:218636..219223

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015729 ID=TCONS_00015729|Name=TCONS_00015729|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at sc0000215:218636..219223 (Clytia hemisphaerica)
GTTGAATTTCTGTCTCAAAAATTAATCTATATTTGATTTTGAATGAATCA
TATATCAAAGATGAGTGAAGCTTACTCACAGTAAAGCCTCTCAAAAATAG
AACAAAGAGCTCTTTCATGTTCAGAAGAGTGTGTTGCGTATGCTGTGACT
ATGTAccacaaataaaaacaaacacttGGTAGATTTGTTAAGGGAAAGGT
ATTTCCTGCAAAATGTTGAAAACGGTTTTGTCATGTCTACTTTAGAATGT
CACTGCTTTTATATCCGGTAGAAAAAAGGCAGCTTGAAGAATTTTACCAA
ATACAAATCTTATATAAAGATTTAAATAATGAGAGAAAAATAGAAGAATC
TCTACAGTAGCGTAGTGGCGCAAAAAGACGCCTCTGTTACTAATTGCAGC
Gcccctttgctcttttacaccttagatatggcagttttcggccaaaatga
gagaaaatactcaaaaaatactAGCTTCGCTCGcgaaattttaaaaaaca
tgTTCAATTTTTATCGGGGGCGCCAAAAaccaaaatcttctaaaattgcc
tCCCCGGTTTGCGcgaattttagtcgacccaccacgct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008783XLOC_008783Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015729-exon-sc0000215-1491911889:218636..219223TCONS_00015729-exon-sc0000215-1491911889:218636..219223Clytia hemisphaericaexon
TCONS_00015729-exon-sc0000215-1510915933:218636..219223TCONS_00015729-exon-sc0000215-1510915933:218636..219223Clytia hemisphaericaexon
TCONS_00015729-exon-sc0000215-1575043694:218636..219223TCONS_00015729-exon-sc0000215-1575043694:218636..219223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:218636..219223 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.227017	0.103824	1.26237	1.09729	0.512323	1.34685	0.0788824	0.586251	0.817833	0.320884	0.346738	0.0650459	0.159463	0.1151	0.210815	0.0720263	0	0.532409	0.545769	0.264875	0.216778	0.585471	0.708225	0	1.18551	0.547941	0.415594	0.423424
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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