TCONS_00015735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015735
Unique NameTCONS_00015735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015735 ID=TCONS_00015735|Name=TCONS_00015735|organism=Clytia hemisphaerica|type=transcript|length=632bp
AGTTCGTTAGGGTTAGCTGGAGCAGTTGGAACGCAATGTGTTGATTTATT
GAGATAATCGGTGTATGTTTTGATTTCCTGGTTATTTTCAACAATCTTCC
TCTTCAAGGAGGACAACTCTTTTTGTAGGAGCCCAATTGTGTTTTCTTTG
CCgatgtttttcttataaaggaCTTTCAGCTCGCCTTTGATCGCCGCAAC
TTGATCAGTAAGATGTTTTTTGGATTTCTCCAACTGATTGATCTTTTCGA
CGATAAATTTGCGATGTGGGTCAACTTCGCGATGATGTAGTTGGTTGTGT
TTTTCGAAATCCGCCAACGACAAAAAAATCGCATTGCCAGGACACACAGT
ACAAGTGTGTAGATCCGAGATGTTGACACGTGATAGATTTTTTGAATTAA
CTAACATTTTGATATGATTTGCATAAGACAATTACCAAATACGTCCGCCa
aataacaattttcaaaagaaataaatcttgataaatttttaaagaaagaa
ttGACGTTAATatgcaaaaaatttatttgacgtcacattcttttttcatt
tgacGTTAATTCGTTAAACACGCATGCGCAAAATATATGTGCGCATAAAC
gtaatattttattaaaaagggCAAAATAGAAG
Run BLAST on NCBI

protein sequence of TCONS_00015735-protein

>TCONS_00015735-protein ID=TCONS_00015735-protein|Name=TCONS_00015735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MLVNSKNLSRVNISDLHTCTVCPGNAIFLSLADFEKHNQLHHREVDPHRK
FIVEKINQLEKSKKHLTDQVAAIKGELKVLYKKNIGKENTIGLLQKELSS
LKRKIVENNQEIKTYTDYLNKSTHCVPTAPANPNE
Run BLAST on NCBI

transcript from alignment at sc0000215:272575..273206

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015735 ID=TCONS_00015735|Name=TCONS_00015735|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at sc0000215:272575..273206 (Clytia hemisphaerica)
CTTCTATTTTGccctttttaataaaatattacGTTTATGCGCACATATAT
TTTGCGCATGCGTGTTTAACGAATTAACgtcaaatgaaaaaagaatgtga
cgtcaaataaattttttgcatATTAACGTCaattctttctttaaaaattt
atcaagatttatttcttttgaaaattgttatttGGCGGACGTATTTGGTA
ATTGTCTTATGCAAATCATATCAAAATGTTAGTTAATTCAAAAAATCTAT
CACGTGTCAACATCTCGGATCTACACACTTGTACTGTGTGTCCTGGCAAT
GCGATTTTTTTGTCGTTGGCGGATTTCGAAAAACACAACCAACTACATCA
TCGCGAAGTTGACCCACATCGCAAATTTATCGTCGAAAAGATCAATCAGT
TGGAGAAATCCAAAAAACATCTTACTGATCAAGTTGCGGCGATCAAAGGC
GAGCTGAAAGtcctttataagaaaaacatcGGCAAAGAAAACACAATTGG
GCTCCTACAAAAAGAGTTGTCCTCCTTGAAGAGGAAGATTGTTGAAAATA
ACCAGGAAATCAAAACATACACCGATTATCTCAATAAATCAACACATTGC
GTTCCAACTGCTCCAGCTAACCCTAACGAACT

Coding sequence (CDS) from alignment at sc0000215:272575..273206

>TCONS_00015735 ID=TCONS_00015735|Name=TCONS_00015735|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0000215:272575..273206 (Clytia hemisphaerica)
ATGTTAGTTAATTCAAAAAATCTATCACGTGTCAACATCTCGGATCTACA
CACTTGTACTGTGTGTCCTGGCAATGCGATTTTTTTGTCGTTGGCGGATT
TCGAAAAACACAACCAACTACATCATCGCGAAGTTGACCCACATCGCAAA
TTTATCGTCGAAAAGATCAATCAGTTGGAGAAATCCAAAAAACATCTTAC
TGATCAAGTTGCGGCGATCAAAGGCGAGCTGAAAGtcctttataagaaaa
acatcGGCAAAGAAAACACAATTGGGCTCCTACAAAAAGAGTTGTCCTCC
TTGAAGAGGAAGATTGTTGAAAATAACCAGGAAATCAAAACATACACCGA
TTATCTCAATAAATCAACACATTGCGTTCCAACTGCTCCAGCTAACCCTA
ACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008789XLOC_008789Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015735-proteinTCONS_00015735-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015735-exon-sc0000215-1491911889:272575..273206TCONS_00015735-exon-sc0000215-1491911889:272575..273206Clytia hemisphaericaexon
TCONS_00015735-exon-sc0000215-1510915933:272575..273206TCONS_00015735-exon-sc0000215-1510915933:272575..273206Clytia hemisphaericaexon
TCONS_00015735-exon-sc0000215-1575043694:272575..273206TCONS_00015735-exon-sc0000215-1575043694:272575..273206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:272575..273206 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.335487	0.408941	1.42446	0.836166	0	0	0	0	0	0	0	0.223432	0.0557805	0	0.0476251	0.102218	0	0	0	0.0932969	0	0.118661	0	0	0	0	0.115005	0	0	0.0948451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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