TCONS_00015739 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015739
Unique NameTCONS_00015739
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015739 ID=TCONS_00015739|Name=TCONS_00015739|organism=Clytia hemisphaerica|type=transcript|length=310bp
GTTTCTTATAGAATCTttggaaaagaaaacaaatttacTGCATACCAAAA
TTATAACCCAAACCACGAACACACGTTGATGAATAAATAAACGATCAACT
ATTTACTTACCAGAAGCAGGACGGTTAACAGAACAGGAGAAGGATTTCCT
CGTCGTTGTATAATCATATTTTCGATTGTCAACAACATTCAAGGAGATTC
ACCAGTCAGTAAGAGACACCATTTTGGAAGATCCTGCATTGCAGCATATA
AAGCTCATAACGTCTATCTAGCCAACAATTTCTGAAAATCAAGAGAGGAG
AAGATTACAT
Run BLAST on NCBI

transcript from alignment at sc0000215:411911..412220

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015739 ID=TCONS_00015739|Name=TCONS_00015739|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at sc0000215:411911..412220 (Clytia hemisphaerica)
ATGTAATCTTCTCCTCTCTTGATTTTCAGAAATTGTTGGCTAGATAGACG
TTATGAGCTTTATATGCTGCAATGCAGGATCTTCCAAAATGGTGTCTCTT
ACTGACTGGTGAATCTCCTTGAATGTTGTTGACAATCGAAAATATGATTA
TACAACGACGAGGAAATCCTTCTCCTGTTCTGTTAACCGTCCTGCTTCTG
GTAAGTAAATAGTTGATCGTTTATTTATTCATCAACGTGTGTTCGTGGTT
TGGGTTATAATTTTGGTATGCAgtaaatttgttttcttttccaaAGATTC
TATAAGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008793XLOC_008793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015739-exon-sc0000215-1491911889:411911..412220TCONS_00015739-exon-sc0000215-1491911889:411911..412220Clytia hemisphaericaexon
TCONS_00015739-exon-sc0000215-1510915933:411911..412220TCONS_00015739-exon-sc0000215-1510915933:411911..412220Clytia hemisphaericaexon
TCONS_00015739-exon-sc0000215-1575043694:411911..412220TCONS_00015739-exon-sc0000215-1575043694:411911..412220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:411911..412220 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.702225	1.71195	0	0	0	0	0	0	0.591752	1.09947	2.13435	0.233839	4.20325	6.06266	2.9906	3.85125	4.21726	8.91528	2.61268	4.29626	0	1.49026	1.20774	0.732005	0	0	0.481445	0	0	1.19115
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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