|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015758 ID=TCONS_00015758|Name=TCONS_00015758|organism=Clytia hemisphaerica|type=transcript|length=501bp
GTAAGTTACAACACAACACCCTTAAACTAAAGTTCATTCACACTTTTGGT
CTCCAACACTCCCAAACAAACACACAACCAAACAAACATTTACTGCAAAG
ACAAAGACCTTACTCTACTACTAAGCATCAAACCAATACCACCTATCATC
CAACGAGACTTAAACATTTATTTTACTTATTATCATTATCAAAAGCAATG
AACTCCATTCAAGAGCTACACAAAACACGACGGGGTAGCCAGAAGCCTAC
CCTCGATCTAGACCATACGAAAgcattaaacaaaaataatgcGGCGGCAA
GTGTTGTTAACCTTANGCCCGCCCTCGATCTGGACCATACGCAAGCATTA
AACAAAAATGTGGCGGCAAGTGTTGTCAACCTTACAAGTGCTGTCAATAC
CAGCATGCTAAACTTAAATGCTGGTGAAGTTTCTTCCCATTCATTGACCA
ATACCACAAACGTCACAGATAGAGAAAATATCAACCCAGTGAACACGGAA
A Run BLAST on NCBI protein sequence of TCONS_00015758-protein >TCONS_00015758-protein ID=TCONS_00015758-protein|Name=TCONS_00015758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
KLQHNTLKLKFIHTFGLQHSQTNTQPNKHLLQRQRPYSTTKHQTNTTYHP
TRLKHLFYLLSLSKAMNSIQELHKTRRGSQKPTLDLDHTKALNKNNAAAS
VVNLXPALDLDHTQALNKNVAASVVNLTSAVNTSMLNLNAGEVSSHSLTN
TTNVTDRENINPVNTE Run BLAST on NCBI transcript from alignment at sc0000216:437890..439244+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015758 ID=TCONS_00015758|Name=TCONS_00015758|organism=Clytia hemisphaerica|type=transcript|length=1355bp|location=Sequence derived from alignment at sc0000216:437890..439244+ (Clytia hemisphaerica)
GTAAGTTACAACACAACACCCTTAAACTAAAGTTCATTCACACTTTTGGT
CTCCAACACTCCCAAACAAACACACAACCAAACAAACATTTACTGCAAAG
ACAAAGACCTTACTCTACTACTAAGCATCAAACCAATACCACCTATCATC
CAACGAGACTTAAACATTTATTTTACTTATTATCATTATCAAAAGCAATG
AACTCCATTCAAGAGGtaaatattcaatattttaaaGTTGGTTATTAAGA
TTTcttaacccgaggtgatgtaatacTCAACGAGACGAAGCCAAGTTGAA
TATACATTACTGAGGCTTTTCAGTGGATGTTTTTGCCTGCAGGTATACAA
TAATACATCTTAAATATTACTGTCTTACTTTAGTAATGACCCACTGAGAA
TGAACATTCCATCCAGCCATGGATAACGTGGAAGAGTTAACGAATGTCAA
TCCGGGGGGGTTCTCATATGGTCTGACCCACgtcatgtgccgcccttaat
ggttggtttttcgaaaccctcgaaatgcactgtaagggtgtacttttgat
agagcgctacaagggtcttcttttaacTGAATACACTGTAAGAATGTGTT
TGGGGACTACTGAATTGCAAGGCTGACATTAAAACTCTGGTGTATCTTTA
AAGGTTTGACTCGCACCCATTTCGATTTGCTTTacacattgtgtcgacat
ctctGGCTCACTTTCAGGTGGCTttagcaaaataagatatgaaaccaaac
tacactgtaagggtcagataTGTTAGGTAAAATGCACTACTCAAAAGCCT
GCACTGCAAGAATCCgattttaaaagccatttttggcggcacatgtcATC
ATTTAGAAaccgagtgccccccccctccGGATGTCATAGGGTTTACCGGG
GGTAAAGCATCTTGGGCACTTTCTTCGACATGCAAACTGTGGTCGTAAAG
GCAATAACTTACCTTCAGCAATAATAAACAGTGacgtttttatgaaaaat
atctTCTAAAGAATCTGAGATGCATATAGATTATATGATTAATTTCTACT
CACTTATTCTCTCTTTCAGCTACACAAAACACGACGGGGTAGCCAGAAGC
CTACCCTCGATCTAGACCATACGAAAgcattaaacaaaaataatgcGGCG
GCAAGTGTTGTTAACCTTANGCCCGCCCTCGATCTGGACCATACGCAAGC
ATTAAACAAAAATGTGGCGGCAAGTGTTGTCAACCTTACAAGTGCTGTCA
ATACCAGCATGCTAAACTTAAATGCTGGTGAAGTTTCTTCCCATTCATTG
ACCAATACCACAAACGTCACAGATAGAGAAAATATCAACCCAGTGAACAC
GGAAA Coding sequence (CDS) from alignment at sc0000216:437890..439244+ >TCONS_00015758 ID=TCONS_00015758|Name=TCONS_00015758|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000216:437890..439244+ (Clytia hemisphaerica)
AAGTTACAACACAACACCCTTAAACTAAAGTTCATTCACACTTTTGGTCT
CCAACACTCCCAAACAAACACACAACCAAACAAACATTTACTGCAAAGAC
AAAGACCTTACTCTACTACTAAGCATCAAACCAATACCACCTATCATCCA
ACGAGACTTAAACATTTATTTTACTTATTATCATTATCAAAAGCAATGAA
CTCCATTCAAGAGCTACACAAAACACGACGGGGTAGCCAGAAGCCTACCC
TCGATCTAGACCATACGAAAgcattaaacaaaaataatgcGGCGGCAAGT
GTTGTTAACCTTANGCCCGCCCTCGATCTGGACCATACGCAAGCATTAAA
CAAAAATGTGGCGGCAAGTGTTGTCAACCTTACAAGTGCTGTCAATACCA
GCATGCTAAACTTAAATGCTGGTGAAGTTTCTTCCCATTCATTGACCAAT
ACCACAAACGTCACAGATAGAGAAAATATCAACCCAGTGAACACGGAAAA
GTTACAACACAACACCCTTAAACTAAAGTTCATTCACACTTTTGGTCTCC
AACACTCCCAAACAAACACACAACCAAACAAACATTTACTGCAAAGACAA
AGACCTTACTCTACTACTAAGCATCAAACCAATACCACCTATCATCCAAC
GAGACTTAAACATTTATTTTACTTATTATCATTATCAAAAGCAATGAACT
CCATTCAAGAGCTACACAAAACACGACGGGGTAGCCAGAAGCCTACCCTC
GATCTAGACCATACGAAAgcattaaacaaaaataatgcGGCGGCAAGTGT
TGTTAACCTTANGCCCGCCCTCGATCTGGACCATACGCAAGCATTAAACA
AAAATGTGGCGGCAAGTGTTGTCAACCTTACAAGTGCTGTCAATACCAGC
ATGCTAAACTTAAATGCTGGTGAAGTTTCTTCCCATTCATTGACCAATAC
CACAAACGTCACAGATAGAGAAAATATCAACCCAGTGAACACGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015758-exon-sc0000216-1491911889:437890..438104 | TCONS_00015758-exon-sc0000216-1491911889:437890..438104 | Clytia hemisphaerica | exon |
| TCONS_00015758-exon-sc0000216-1510915933:437890..438104 | TCONS_00015758-exon-sc0000216-1510915933:437890..438104 | Clytia hemisphaerica | exon |
| TCONS_00015758-exon-sc0000216-1575043694:437890..438104 | TCONS_00015758-exon-sc0000216-1575043694:437890..438104 | Clytia hemisphaerica | exon |
| TCONS_00015758-exon-sc0000216-1491911889:438959..439244 | TCONS_00015758-exon-sc0000216-1491911889:438959..439244 | Clytia hemisphaerica | exon |
| TCONS_00015758-exon-sc0000216-1510915933:438959..439244 | TCONS_00015758-exon-sc0000216-1510915933:438959..439244 | Clytia hemisphaerica | exon |
| TCONS_00015758-exon-sc0000216-1575043694:438959..439244 | TCONS_00015758-exon-sc0000216-1575043694:438959..439244 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:437890..439244 + |
Blast
The following BLAST results are available for this feature:
|
