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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015787 ID=TCONS_00015787|Name=TCONS_00015787|organism=Clytia hemisphaerica|type=transcript|length=1222bp
ATACGTCATTTTAGGCGATTTCGGCTTGAAAATGGGTTGGTGTAAATGGG
GCCATCTGATAAGGTGAATTTGGTCTAAAATAAACGTGTAAATCAGACTT
TGGCGCTCGGTTGGAGAAGATTGAGTTTTTGGTTCAATCCATGAGGTTTG
AGGGTTCTCAGTCCTTTGATCCAGAAGGTTTCTCTCTGTAGTATtatcct
tttcattttttctatctGTTTTGTTGATCTGATCGATGATTGTGAACATT
ACGTCTCTGTTGAAATTGTAGTTGGTTTGGTGGAAATGTTTACACGCCGG
GATTGTCTCCTGTCGTGATCTGTATGCATGCATTACTCTTATGGTTATTG
AGTCTTTGACTGAATTGGGTCTCGCTTTTTCCAATATATTAGATGTGATA
TTTGTTGCATTCCAGGAGGTAGATGATACGAGTGCTTTTCATTGCAGTTG
ACGATGTGGAAGATCTGGTATGTCCTTTTGGTTTGTTGGTTGGGGAAGGT
TGAGGTTGACATTATTTATTTGAAGCAAAGGTTTCTTGTCCTTGTGAAGC
AAGGCTGGcacttttctttcaaattttcttgttttcttgggACTTTGTTA
TTGGATATTGATGTTTGTCAAAGTATatctttcaagtttttgttGCGTCT
ATACGCAATGACTGGTGTTTGTTGGAAGGTATCTTGAAACCGTTCGTTGA
TGTTGAGGATATTCCAGTGCTTTTCCAGTAAGGTACGGATAGGTGGTAAG
TTTTTGTTATAGGTAGTGATGAAGGCAATTTGTTGTTAATTCTCGGTGTT
GTTATATTTAGGAGATCTTCCCGGCTCTTATTCTTCACTTTGTCGAACTG
TTTATGGAGGTTTTCAGCTTTGCATCCTCTTCTGATGAATGCATCTTTCA
TTTGGAGGAGGGATTGGTTGTATTCTTCGGGGTTAGAgcaaatctttttt
tccttAGTGCTTGACCGTATGGGATGTTGTGTTTTAGGTTGTTTGGGTGG
TTTGGGGTATTATGGAGGTATGATGACCGAtctgttggttttttgaagat
cttGTAATCCAGTCGATTGTTTTTTATGGTTGTGTCCAGGAAGTTGATCT
CTCTATGAAAGTATTCCATCGTGAATTTAATTGAGGGGTGAACTGTGTTG
ATGATTGCGAAAAATTCTTTTAGATCACTTTCTGTGCCTTTccatataaa
aaatatgttatctatgatgatg Run BLAST on NCBI protein sequence of TCONS_00015787-protein >TCONS_00015787-protein ID=TCONS_00015787-protein|Name=TCONS_00015787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MHAYRSRQETIPACKHFHQTNYNFNRDVMFTIIDQINKTDRKNEKDNTTE
RNLLDQRTENPQTSWIEPKTQSSPTERQSLIYTFILDQIHLIRWPHLHQP
IFKPKSPKMTY Run BLAST on NCBI transcript from alignment at sc0000216:292986..294207 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015787 ID=TCONS_00015787|Name=TCONS_00015787|organism=Clytia hemisphaerica|type=transcript|length=1222bp|location=Sequence derived from alignment at sc0000216:292986..294207 (Clytia hemisphaerica)
catcatcatagataacatattttttatatggAAAGGCACAGAAAGTGATC
TAAAAGAATTTTTCGCAATCATCAACACAGTTCACCCCTCAATTAAATTC
ACGATGGAATACTTTCATAGAGAGATCAACTTCCTGGACACAACCATAAA
AAACAATCGACTGGATTACaagatcttcaaaaaaccaacagaTCGGTCAT
CATACCTCCATAATACCCCAAACCACCCAAACAACCTAAAACACAACATC
CCATACGGTCAAGCACTaaggaaaaaaagatttgcTCTAACCCCGAAGAA
TACAACCAATCCCTCCTCCAAATGAAAGATGCATTCATCAGAAGAGGATG
CAAAGCTGAAAACCTCCATAAACAGTTCGACAAAGTGAAGAATAAGAGCC
GGGAAGATCTCCTAAATATAACAACACCGAGAATTAACAACAAATTGCCT
TCATCACTACCTATAACAAAAACTTACCACCTATCCGTACCTTACTGGAA
AAGCACTGGAATATCCTCAACATCAACGAACGGTTTCAAGATACCTTCCA
ACAAACACCAGTCATTGCGTATAGACGCaacaaaaacttgaaagatATAC
TTTGACAAACATCAATATCCAATAACAAAGTcccaagaaaacaagaaaat
ttgaaagaaaagtgCCAGCCTTGCTTCACAAGGACAAGAAACCTTTGCTT
CAAATAAATAATGTCAACCTCAACCTTCCCCAACCAACAAACCAAAAGGA
CATACCAGATCTTCCACATCGTCAACTGCAATGAAAAGCACTCGTATCAT
CTACCTCCTGGAATGCAACAAATATCACATCTAATATATTGGAAAAAGCG
AGACCCAATTCAGTCAAAGACTCAATAACCATAAGAGTAATGCATGCATA
CAGATCACGACAGGAGACAATCCCGGCGTGTAAACATTTCCACCAAACCA
ACTACAATTTCAACAGAGACGTAATGTTCACAATCATCGATCAGATCAAC
AAAACagatagaaaaaatgaaaaggataATACTACAGAGAGAAACCTTCT
GGATCAAAGGACTGAGAACCCTCAAACCTCATGGATTGAACCAAAAACTC
AATCTTCTCCAACCGAGCGCCAAAGTCTGATTTACACGTTTATTTTAGAC
CAAATTCACCTTATCAGATGGCCCCATTTACACCAACCCATTTTCAAGCC
GAAATCGCCTAAAATGACGTAT Coding sequence (CDS) from alignment at sc0000216:292986..294207 >TCONS_00015787 ID=TCONS_00015787|Name=TCONS_00015787|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000216:292986..294207 (Clytia hemisphaerica)
ATGCATGCATACAGATCACGACAGGAGACAATCCCGGCGTGTAAACATTT
CCACCAAACCAACTACAATTTCAACAGAGACGTAATGTTCACAATCATCG
ATCAGATCAACAAAACagatagaaaaaatgaaaaggataATACTACAGAG
AGAAACCTTCTGGATCAAAGGACTGAGAACCCTCAAACCTCATGGATTGA
ACCAAAAACTCAATCTTCTCCAACCGAGCGCCAAAGTCTGATTTACACGT
TTATTTTAGACCAAATTCACCTTATCAGATGGCCCCATTTACACCAACCC
ATTTTCAAGCCGAAATCGCCTAAAATGACGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015787-exon-sc0000216-1491911889:292986..294207 | TCONS_00015787-exon-sc0000216-1491911889:292986..294207 | Clytia hemisphaerica | exon |
| TCONS_00015787-exon-sc0000216-1510915933:292986..294207 | TCONS_00015787-exon-sc0000216-1510915933:292986..294207 | Clytia hemisphaerica | exon |
| TCONS_00015787-exon-sc0000216-1575043694:292986..294207 | TCONS_00015787-exon-sc0000216-1575043694:292986..294207 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:292986..294207 . |
Blast
The following BLAST results are available for this feature:
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