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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015801 ID=TCONS_00015801|Name=TCONS_00015801|organism=Clytia hemisphaerica|type=transcript|length=1779bp
CTCGAATGAAACGAATTTTCGTTGGGAACTCCATAGACGCCATACTCTCT
GGAAAAATTCACCTCGATTTGTATAAATAATTGTGCTACTACATTTGAag
gtgaaaaagtgaaaaatcacAGCGGAAAGCTAAGATCTTCTTcatatttt
tgtgatttcttctTAGATTAATTGAATAgttaaattataaattaaagAAT
GGATTCTGATTATTCTGACAAAAGGAATTTGGCTCACAGCGCTAGTGGGA
GGAATGTGCACAAAGTTGCCGACAATCAGCAAATTGGAAAGCTcaaagaa
gaacatcaaaaagagATTGAGAAACTCAAAATGGAATTTAAAATTCAACA
ACTGGAATCTGAAAACgagaaaacgttgaaaatcatgcagctagaaaaag
aaaaacaaactttatcTCATCAATTTGAGATGTTCAAATTAAAGAATTCT
CATGACTCTCAATCAAGCCAAGTTCAAGCCGATCAACAACTCCAAAAACA
GAAAGACGAGCTGCAAAATAACTTAGTTGAAAAGGAGAAACAATTAGTAG
CCAAAGAGCACGAAATGGTTCTGTACAAGAAAGAACAagaaaatgaatgg
aaaatgagaatgaaagatttggaaaatgaacacaaaatcaaaatcttaca
aaaagagacaaaattgaacgagatggagaaaaaaatgacagagAAAGAAG
CAACTGTCCAACATTTGAAcagagaaattgaaaatttgaaaagcgTCATT
CAAAAGCAAAACCAAGCTGCGAATGAAGTTGTGGAAACTATGACGACGAT
CGATCGTTTGGTTTGGGGAGCAGAATATTTTCACGAAGGAAATAAATCTT
CACTTTTGTACCCTTCTTATGGTAACTGGTACAAAGCAATTTCTGCGATA
ATGgggaataaaaaaatgtttaagaaGGATAAATATTTGTTCATGAGAAA
GGAATTCAATAAGGGCCATGCATTTCTGGATTTCGTGAACAGAAAAGACA
ACAGTTGCGAAGAAGAGTTGACGGATTTTCTGGTTGAAGGTTTGAAAATT
GTATGGGCGACTGCAACTTTCTATCTTCTTCATACAAAGGTTTTTGGGAA
GCGTTTAAAGTTTGAACGAGAGAGTCAGGCCACTACTTATGAATATTGGC
GTGTTGTTAatgtttcaaaagatttttatttcgGTGATAAACAATCCGCA
ATTGTTTTTGGAATTTTGAAGTGAATCAAATATACCAAAGATTGTATACC
GAAGAAAGCTCAGTCCCACAAAACATTTTAATCAGAAAGATTAGGCtttg
atacaccttttcgaccgtagccgctaattgccgcgcgggcattttttacc
accctaaaaccatccTAGTCTTTTTTTGGCGTctgaagacaatagaaaaa
agtttaaaaaaaggattcgatcgagtttagggtggtaaaaaatgcccgcg
cggcaattggcggctacagtcgaaaaggtgtattgttttatcatttgtaa
tttaatttttaagaataaaattTAATCAGATAGGGTCAGtacccagttgg
cacacaacgttgtttattTGAACGTTAGGGATGTTAGATGGATGTTATCA
TGACGTTTTGTGCCATCCGAgtcatgattttttttaatgacgTGTTTGTA
CAcaagaaaaacatgaaattcCTTTTGGACACCCTTTGTCAAAGACCCAC
TGGAACCCCAGCACCActtgaaaattgactttcattccatccccatttaa
aattcaaaaagaaaaatccactccaaaac Run BLAST on NCBI protein sequence of TCONS_00015801-protein >TCONS_00015801-protein ID=TCONS_00015801-protein|Name=TCONS_00015801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MDSDYSDKRNLAHSASGRNVHKVADNQQIGKLKEEHQKEIEKLKMEFKIQ
QLESENEKTLKIMQLEKEKQTLSHQFEMFKLKNSHDSQSSQVQADQQLQK
QKDELQNNLVEKEKQLVAKEHEMVLYKKEQENEWKMRMKDLENEHKIKIL
QKETKLNEMEKKMTEKEATVQHLNREIENLKSVIQKQNQAANEVVETMTT
IDRLVWGAEYFHEGNKSSLLYPSYGNWYKAISAIMGNKKMFKKDKYLFMR
KEFNKGHAFLDFVNRKDNSCEEELTDFLVEGLKIVWATATFYLLHTKVFG
KRLKFERESQATTYEYWRVVNVSKDFYFGDKQSAIVFGILK Run BLAST on NCBI transcript from alignment at sc0000216:398584..400362 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015801 ID=TCONS_00015801|Name=TCONS_00015801|organism=Clytia hemisphaerica|type=transcript|length=1779bp|location=Sequence derived from alignment at sc0000216:398584..400362 (Clytia hemisphaerica)
gttttggagtggatttttctttttgaattttaaatggggatggaatgaaa
gtcaattttcaagTGGTGCTGGGGTTCCAGTGGGTCTTTGACAAAGGGTG
TCCAAAAGgaatttcatgtttttcttgTGTACAAACAcgtcattaaaaaa
aatcatgacTCGGATGGCACAAAACGTCATGATAACATCCATCTAACATC
CCTAACGTTCAaataaacaacgttgtgtgccaactgggtaCTGACCCTAT
CTGATTAaattttattcttaaaaattaaattacaaatgataaaacaatac
accttttcgactgtagccgccaattgccgcgcgggcattttttaccaccc
taaactcgatcgaatcctttttttaaacttttttctattgtcttcagACG
CCAAAAAAAGACTAggatggttttagggtggtaaaaaatgcccgcgcggc
aattagcggctacggtcgaaaaggtgtatcaaaGCCTAATCTTTCTGATT
AAAATGTTTTGTGGGACTGAGCTTTCTTCGGTATACAATCTTTGGTATAT
TTGATTCACTTCAAAATTCCAAAAACAATTGCGGATTGTTTATCACcgaa
ataaaaatcttttgaaacatTAACAACACGCCAATATTCATAAGTAGTGG
CCTGACTCTCTCGTTCAAACTTTAAACGCTTCCCAAAAACCTTTGTATGA
AGAAGATAGAAAGTTGCAGTCGCCCATACAATTTTCAAACCTTCAACCAG
AAAATCCGTCAACTCTTCTTCGCAACTGTTGTCTTTTCTGTTCACGAAAT
CCAGAAATGCATGGCCCTTATTGAATTCCTTTCTCATGAACAAATATTTA
TCCttcttaaacatttttttattcccCATTATCGCAGAAATTGCTTTGTA
CCAGTTACCATAAGAAGGGTACAAAAGTGAAGATTTATTTCCTTCGTGAA
AATATTCTGCTCCCCAAACCAAACGATCGATCGTCGTCATAGTTTCCACA
ACTTCATTCGCAGCTTGGTTTTGCTTTTGAATGAcgcttttcaaattttc
aatttctctgTTCAAATGTTGGACAGTTGCTTCTTTctctgtcatttttt
tctccatctcgttcaattttgtctctttttgtaagattttgattttgtgt
tcattttccaaatctttcattctcattttccattcattttctTGTTCTTT
CTTGTACAGAACCATTTCGTGCTCTTTGGCTACTAATTGTTTCTCCTTTT
CAACTAAGTTATTTTGCAGCTCGTCTTTCTGTTTTTGGAGTTGTTGATCG
GCTTGAACTTGGCTTGATTGAGAGTCATGAGAATTCTTTAATTTGAACAT
CTCAAATTGATGAgataaagtttgtttttctttttctagctgcatgattt
tcaacgttttctcGTTTTCAGATTCCAGTTGTTGAATTTTAAATTCCATT
TTGAGTTTCTCAATctctttttgatgttcttctttgAGCTTTCCAATTTG
CTGATTGTCGGCAACTTTGTGCACATTCCTCCCACTAGCGCTGTGAGCCA
AATTCCTTTTGTCAGAATAATCAGAATCCATTctttaatttataatttaa
cTATTCAATTAATCTAagaagaaatcacaaaaatatgAAGAAGATCTTAG
CTTTCCGCTgtgatttttcactttttcacctTCAAATGTAGTAGCACAAT
TATTTATACAAATCGAGGTGAATTTTTCCAGAGAGTATGGCGTCTATGGA
GTTCCCAACGAAAATTCGTTTCATTCGAG Coding sequence (CDS) from alignment at sc0000216:398584..400362 >TCONS_00015801 ID=TCONS_00015801|Name=TCONS_00015801|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000216:398584..400362 (Clytia hemisphaerica)
TCACTTCAAAATTCCAAAAACAATTGCGGATTGTTTATCACcgaaataaa
aatcttttgaaacatTAACAACACGCCAATATTCATAAGTAGTGGCCTGA
CTCTCTCGTTCAAACTTTAAACGCTTCCCAAAAACCTTTGTATGAAGAAG
ATAGAAAGTTGCAGTCGCCCATACAATTTTCAAACCTTCAACCAGAAAAT
CCGTCAACTCTTCTTCGCAACTGTTGTCTTTTCTGTTCACGAAATCCAGA
AATGCATGGCCCTTATTGAATTCCTTTCTCATGAACAAATATTTATCCtt
cttaaacatttttttattcccCATTATCGCAGAAATTGCTTTGTACCAGT
TACCATAAGAAGGGTACAAAAGTGAAGATTTATTTCCTTCGTGAAAATAT
TCTGCTCCCCAAACCAAACGATCGATCGTCGTCATAGTTTCCACAACTTC
ATTCGCAGCTTGGTTTTGCTTTTGAATGAcgcttttcaaattttcaattt
ctctgTTCAAATGTTGGACAGTTGCTTCTTTctctgtcatttttttctcc
atctcgttcaattttgtctctttttgtaagattttgattttgtgttcatt
ttccaaatctttcattctcattttccattcattttctTGTTCTTTCTTGT
ACAGAACCATTTCGTGCTCTTTGGCTACTAATTGTTTCTCCTTTTCAACT
AAGTTATTTTGCAGCTCGTCTTTCTGTTTTTGGAGTTGTTGATCGGCTTG
AACTTGGCTTGATTGAGAGTCATGAGAATTCTTTAATTTGAACATCTCAA
ATTGATGAgataaagtttgtttttctttttctagctgcatgattttcaac
gttttctcGTTTTCAGATTCCAGTTGTTGAATTTTAAATTCCATTTTGAG
TTTCTCAATctctttttgatgttcttctttgAGCTTTCCAATTTGCTGAT
TGTCGGCAACTTTGTGCACATTCCTCCCACTAGCGCTGTGAGCCAAATTC
CTTTTGTCAGAATAATCAGAATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015801-exon-sc0000216-1491911889:398584..400362 | TCONS_00015801-exon-sc0000216-1491911889:398584..400362 | Clytia hemisphaerica | exon |
| TCONS_00015801-exon-sc0000216-1510915933:398584..400362 | TCONS_00015801-exon-sc0000216-1510915933:398584..400362 | Clytia hemisphaerica | exon |
| TCONS_00015801-exon-sc0000216-1575043694:398584..400362 | TCONS_00015801-exon-sc0000216-1575043694:398584..400362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:398584..400362 . |
Blast
The following BLAST results are available for this feature:
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