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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015815 ID=TCONS_00015815|Name=TCONS_00015815|organism=Clytia hemisphaerica|type=transcript|length=3431bpRun BLAST on NCBI protein sequence of TCONS_00015815-protein >TCONS_00015815-protein ID=TCONS_00015815-protein|Name=TCONS_00015815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=607bp MADEETPNLMKITVKTATKKDVVEVSEDATVKDLREAVHVKFEAPVEQLVRun BLAST on NCBI transcript from alignment at sc0000217:390033..412799+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015815 ID=TCONS_00015815|Name=TCONS_00015815|organism=Clytia hemisphaerica|type=transcript|length=22767bp|location=Sequence derived from alignment at sc0000217:390033..412799+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000217:390033..412799+ >TCONS_00015815 ID=TCONS_00015815|Name=TCONS_00015815|organism=Clytia hemisphaerica|type=CDS|length=29184bp|location=Sequence derived from alignment at sc0000217:390033..412799+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015815 vs. Swiss-Prot (Human)
Match: UBQL1 (Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2) HSP 1 Score: 335.495 bits (859), Expect = 3.048e-101 Identity = 211/474 (44.51%), Postives = 303/474 (63.92%), Query Frame = 2
Query: 146 LMKITVKTATKKDVVEVSEDATVKDLREAVHVKFEAPVEQLVLIFGGRILKDPDQLKKEGIKDGLTIHLVIKSQNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNMDSIRQQM----MQNPDMLQQALDNPLVQSITSNPDLMRSVMMSHPEMQQLVERNPEISHLLNNPDLMRQTMQMMRNPAMMQEMMRNQDRAMSNLESIPGGFNALRRLYTDVQEPMMNAAEEQMRSQFGQNRTAD-----STPTPENPQRGTENLDPLPNPWGGXXXXXXXXXXXXXXXXFSLFXXXXXXXXXXXXXXXXXXXXXPGQGS------GIESMFQQLQSNPQLTSNMTQSPFFQQAMRQMMSNPQLMQSMLQNNPMYANNPQMAELMSQQMPNLMERMQSPEYQAAMSNPNMMQAMTNPRVMEALQQIQQGYATIQREA----PDFFTSLGAIG 1510
+MK+TVKT +K+ V E+++V+ +E + +F++ +QLVLIF G+ILKD D L + GI DGLT+HLVIK+QN+ Q +AQ + ++SST +++ T+ +T G G GL N ++ QM + NP+M+ Q ++NP VQS+ SNPDLMR ++M++P+MQQL++RNPEISH+LNNPD+MRQT+++ RNPAMMQEMMRNQDRA+SNLESIPGG+NALRR+YTD+QEPM++AA+E QFG N A S+ P R TEN DPLPNPW +TS +++ + ++ + + +S + S T+ PG G+ G++S+ QQ+ NPQL NM +P+ + M+ + NP L M+ NNP++A NPQ+ E M QQ+P +++MQ NP+ + AM+NPR M+AL QIQQG T+ EA P F LGA+G
Sbjct: 36 IMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQE----QFGGNPFASLVSNTSSGEGSQPSR-TENRDPLPNPWA---PQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQ---------NPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLGALG 492 The following BLAST results are available for this feature:
BLAST of TCONS_00015815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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