TCONS_00015829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015829
Unique NameTCONS_00015829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length756

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015829 ID=TCONS_00015829|Name=TCONS_00015829|organism=Clytia hemisphaerica|type=transcript|length=756bp
gttgtctatcatgtttaaacctattaataagcaattcccggtcggggtta
ctagtggccgcctatagcagtgcctatagaccaagagtaaggcctaaaag
cctggagctgtccaTTGTTTTGACTACAATTTTTGATAACTATGACTTTG
TTGTGTTATTTGTATATATAACCTCAAACTTTAAAGTTTGTGTACAGTAT
TCTGTTTCTCTTCTTACCAAGTaacagaaagaagaaaatgggggtatttt
ttatatctttatgCTTTGTGTTAGCTATCACGCCAATTGTGTACAATCAA
GATGTTGAAGATCTGTCCGCTTGTAACGTCGATCTCGGATTTATCATCGA
TGAATCGGCTTCAATGACTGAATCAGGCTATCGACAAGCAATCGCCTTTG
TCGAAAAAATAGTCAGTAATTTCACACTTGGACCTAACCATACAAGAGTC
TCGTTGATGACATTTTCAACATTCCCTTTCCCACATTTCGGCTTCAATGA
TGTCCAGTCCACAGATTTCACCAGCTTCAAGAATTATTTAGCAACTATCC
CATATCTAGAGGGATTCACCTATACAAACCAGGCATTGGATTTAGCACGT
ACTACAGTCTTCAATACATTCAATGGCGATCGACCAGACTATAGGAGTGT
TGCTGTGGTCCTCACGGATGGTAAGAGTTCTTCTGATATAAGCTTTGTCG
AGGAAGCTTCAAGCAAACTGCTCAATTCAGCTGTTAAAGTGTTAGTGGTT
GGTGTA
Run BLAST on NCBI

transcript from alignment at sc0000217:62544..68246-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015829 ID=TCONS_00015829|Name=TCONS_00015829|organism=Clytia hemisphaerica|type=transcript|length=5703bp|location=Sequence derived from alignment at sc0000217:62544..68246- (Clytia hemisphaerica)
GTTGTCTATCATGTTTAAACCTATTAATAAGCAATTCCCGGTCGGGGTTA
CTAGTGGCCGCCTATAGCAGTGCCTATAGACCAAGAGTAAGGCCTAAAAG
CCTGGAGCTGTCCATTGTTTTGACTACAATTTTTGATAACTATGACTTTG
TTGTGTTATTTGTATATATAACCTCAAACTTTAAAGTTTGTGTACAGTAT
TCTGTTTCTCTTCTTACCAAGTAACAGAAAGAAGAAAATGGGGGTATTTT
TTATATCTTTATGCTTTGTGTTAGGTAAGTTGTTTTTTACTTTTTGTTAT
GTAGTCAGGTAGAATTGCATAACTACCCAGACAAAAATGATGTAGAGATG
AAATTTTGCACAGAGGTCCAGGAACATGTCAGGAATCACCAAAAAAAAGC
CCCACCCCCAGGAAGATGGGAGCACGCTTAAATCCATAATAGCGGACATG
GTACTTTTTTCTATAATTAATAAACCCTTGATAACTGATTTTCAATAGTT
TTCAAATGTCAAAAATATCTAGACAGGAAGATTCCTCTCGATGAGTAGAT
AAAGAAAATGGGGTCACTTTTGAAATTTAGTCCATGTGGTCCCGAGATAT
AACCTTTAAAGTCCAAAAATTGACGATTTTGATGACGTCAGCATTTTTAC
TGAGATGGATAAATTGGAACATTGACAAACTAATCATGTAGCCCTGATCA
TGGGCTNCTGAGATGGATAAATTGGAACGTTGATGAACTAATAATGTAGC
CCTGATCATGGGCTTTCAGAAAAATATATGGTCTAATATGTTTAGATCAG
CCGTTGGCGAGATATAACGATTTTAAAATGGTTTAAAACGCTTATTTTTG
CTGAGTCAGCACTTTTTTTCGATTTTAAAATCTCGCCAACGGTTGGTTGT
AGAAAAAAGTACCATGTCCGCCATTATGGATTTGAGGGTGTTCCCATCCT
CCAGGGGATGGTACTTTTTTTGGTGATTCCTGACATGTTCCTGGACCTCT
GTGCAAAATTTCATCTCTACACCATTTTTGTCCCGGTTTTGGCGGTTTAT
GACCTAATTCTATACCTCACTAATGAATTATGATAAAAATAGTGGGTGGG
CATTGGAATATAGCTTAGATGAAGAGTTTACTAAATTTTGGGTTCAAACT
TGAGTAGGGCTATAAAACTATTCTAAGGGGGGCGTACGGGGTTTGCAATT
TTCCGAAATTCCGTAAAAAAATACTTGCAATTCCGATACCGATTTTTTGG
GGTATTTTTCCTTGTTTTGACTAATTTTTCATCAAATTTAATTGTTCATG
TATGAATTCCGAAAAAAAGGGGATAAAAACTTTATACTACCGAAATTTCG
AAGCAAAAATTCATGGATTTCTGATACCGAAACAATTTCAGAATTCCGAA
ATACCGAAGGAATTTTTCCTTGATTTCCGAAATACCGTACGCCCCCACTT
CTGATATGTGATAGATTAGTTCTCAGCTGTCAGTCGAACTCGAATCTTTC
GAATGTGTGTCATCAGTCAGTGATTTTGTAAGATTGTAATTCTAACATAA
GTGTTTCCGCTTCATATAAATCAGACACATATTTCATATCAGGACAGTGT
CTTGCTATAGTTACATTATGCTGATAATATGCAAAACAATGTTTTTCTTT
TCCTCGTTCTGACCAATCTTGCTCTGCATCCGTGTCAATTCTATGTAAAA
AAGCTTGCGAATTAAAATTGATGAGTAAGCAAACGATATCATTCTTATTT
GAAAAGAAAACCTTAAGATTTTAATTTTAGGGTTCTAGATGCATTTTATT
GTAAAACTTTTGGACAGGCTGGAGAATTCAAAAATTGGTCTGATTTGAAA
TTTTGACTGAAATTTGCGCACTGGGTCCTTGGGCGAATCCTTTGGGCTTT
TTTATTATGATTTTGTAATCTACATTTTTAGGGCCTGGGGACGAATTTTG
GCGCTAAAACGAGGGTAAAACGTTGCAGTGGGACACGGGTAGACTGGAGA
TTCGAAGTACAAGAATATTCAAATGATATAGTTTCAAATTAACGAGAGTA
AAGTTGGAAAATCTCAAACAAAACTAGACGAAAAATGAATTTTTCTTGTA
TTTTGAAATCTTTTTTATGACACTTATGTTTTTATTTTGCCTCGCCTCAC
AGGCTTTTTGGGACCAGATTCTTATCACTATTNCAAAATTGACGAGTAAG
CAAACGATATCACTCTTATTTGAAAAGAAAACCTTTAGATTTTAATTTTA
GGGTTCTAGATGCATTTTATTGTAAAACTTTTGGACAGGCTGGAGAATTC
AAAAATTGGTCTGATTTGACTGAAATTTTGACTGAAATTTGCGCACTGGG
TCCTTGGGCGAATCCTTTGGGCTTTTTTATTATGATATATTTGTAATCTA
CATTTTTAGGGCCTGGGGACGAATTTTGGCGCTAAAACGAGGGTAAAACG
TTACAGTGGGACACGGGTAGACTGGAGGTTCGAAGTACAAGAATATTCAA
ATGATATAGTTTCAAATTAACGAGAGTAAAGTTGGAAAATCTCAAACAAA
ACTAGACGAAAAATGAATTTTTCTTGTATTTTGAAATCTTTTTTATGACA
CTTATGTTTTTATTTTGCCTCGCCTCACAGGCTTTTTGGGACCAGATTCT
TATCACTATTTTTGCGAAACAGCTTGATCCAAACTGATATGATGCAGAAG
AAAATATATACTCATACTTTATATTTTTCCAGTGATTTTCGGTCACTACA
CATATAGACAGGAGAGCCGTCCTGTATTTTTATAATCTGATATATACAGG
ACGGGTACAAGCTGTGAGGCAGTTCTGCCTCAAGAGTTTACATTGGGAAA
TTCGAATTTAGCGCTGTTCTCACTTACTAAAATAAAAACCAAATTTTGGA
ACTTGCGCTTTTTCTAAGAAAGTGTGACCAGTAAAGAAATAACAAAATTT
GATTGTTTATGTTTTTAGGATCTGGGAAATTCAAACTATCAGCCCAAACC
ATGCTATATATTTCGTCATCAGTATATAAAATAAGAGATCATAGCATGGA
TCTCCACGCTACTGCACATATGACCTGAGGAGATAATATGTATCTGATAT
GAAACAGGAATTCTTGTATACAGTGTGTCCCGGAGAATTTTAATATTATT
TCAATCATTCTAAGCACAGTTAAGATTGTGAGTTTTGAGTATTTTATTTT
ATATAACAATGTGTCCGTTTTTTTTCGGATACACTGTATAAGTAAACGTT
TCGAGTCACCAAAAGGAAGCATGTGGCCCGAAATAAAATATGTACCTGAT
ATGAAATAGGTTTCTCGTAAACAGCTAAAACTTTTGAATCCTTTCTTCTT
ATAGCTATCACGCCAATTGTGTACAATCAAGATGTTGAAGATCTGTCCGC
TTGTAACGTCGATCTCGGATTTATCATCGATGAATCGGCTTCAATGACTG
AATCAGGCTATCGACAAGCAATCGCCTTTGTCGAAAAAATAGTCAGTAAT
TTCACACTTGGACCTAACCATACAAGAGTCTCGTTGATGACATTTTCAAC
ATTCCCTTTCCCACATTTCGGCTTCAATGATGTCCAGTCCACAGATTTCA
CCAGCTTCAAGAATTATTTAGCAACTATCCCATATCTAGGTAAGAGAAAA
TTAATTTGTTAAATGATTTTTTTATCTTTTAATCACAGTCCAGAGGCGTA
TTTAGAGTATGTTAAATTGAAAAATAATAAATATGAAAGATTGTGAAGCA
GGCGTATTCCTGATATGATACACAGTTTCCATCGGATCTCATGTGCTTTA
TCAACTTTATCAATTTTATGCGTGCGGTAGTTAAAACTTAGATTAACATT
TAACTCCGTAGTTTTACCTCCTCAATATTTTGCGAGTGAATCTTTCGCCT
TTTAGAGTCTTTAATTTTGAAAATCCAAAAACCTATCTAAAACCTAAACC
TACCGCCCGATTCATATCGCCCGCCCGACCCATATCGCCCCGCCTGAAAC
ACACTTTTTGACCTCCTCCGCTCTAGCAAAATCGGGATGATATTATTCAG
ATTCTTGTATTTTCCCTCGCAATCAAAACGACAATTTGTCGTTTCTGATT
GTTTTGATAAAATAACTGATTCTACTCTTAGCTCCCGAATAGACGTCCCC
ACCCGCTTATTAATTTTTGTTTTGTTTGTTTACAAATTTCGCAAGTACTG
TTATGTCCCTTTAAAGGCGATCATGTTATTACCAAGTTTGTTTGCAACTA
CATCTTCAGTCAAAATCATACTATTAGTGTATTAGCTTAGAACCTTGGCT
AGCTACTGCCTACATGACTGTATATGATTATTATTTTTGTTAAATTAGAG
GGATTCACCTATACAAACCAGGCATTGGATTTAGCACGTACTACAGTCTT
CAATACATTCAATGGCGATCGACCAGACTATAGGAGTGTAAGGATAATTG
AATTTCTACACTGTTTACTTATTAAACGTCAAAAGAAAAACTTGCAATTT
GAATATCCCGATCTTTTGACCAAGCAGTCTTAGGAAAAGTATTTACAAGT
TTTGCTTAAGACTACAGAAGGAACCAACATACCAAATATCTCAGGGTCCA
TCTGATTATCCCTTTTAGGTTGCTGTGGTCCTCACGGATGGTAAGAGTTC
TTCTGATATAAGCTTTGTCGAGGAAGCTTCAAGCAAACTGCTCAATTCAG
CTGTTAAAGTGTTAGTGGTTGGTGTAGGAAGTGGCGTCGTTCAAGCAGAG
CTAGAAGCGATTGCCGGAGACAAGTTCAATATTTTCAGTGTATCTGGCAA
TGATCAATTAAATTCTCTTGTGGAAGCTATATTGCCACCTATTTGCAAAG
GTAAGAGTCGTATTCTTTACTTATGCTGTTTTTTTTGTCGAAGCTGGTAT
TTAAATCCGAAATTTAACAAGCATCAGTTTTCAGCATCCAGTTTTAAACG
AAAAAGATGTTATAGAAGCAAAATACAAAAATTTTCATCCATAGAAAGAT
ATGAATATAAGTTAAGTCGCCTACAGAAATTTGCGGGAAAAGATTTATTT
ACCAAGAGATTTTTACATGAGTTTTTTGCCGACGATATTTTTACCAGTAA
GTTAAGCGCCCCCTTTATCCACCTGGTCTTTGGCTCTCCTCACCATTTTC
GATAGTTTCGCTCTTTTTTCGTGAACTATTTGCTCATTCCTGTCTATTAG
GGATTATTACCTTAAGGGAAGAAATTTTCGCGGGAACAAAATTTCGCGGT
TTTCGCGGATTTTGACTAAAACCGCGAAATTAAGTTCCCGCGAAATTTTA
CAAAATCGTCAATCCGCGAAATTAAATTCCCGCGAAATTTAATTTATTTC
ACGCATTCCCCCAAATTCGTACNTCTTCAATACATTCAATGGCGATCGAC
CAGACTATAGGAGTGTAAGGATAATTGAATTTCTACACTGTTTACTTATT
AAACGTCAAAAGAAAAACTTGCAATTTGAATATCCCGATCTTTTGACCAA
GCAGTCTTAGGAAAAGTATTTACAAGTTTTGCTTAAGACTACAGAAGGAA
CCAACATACCAAATATCTCAGGGTCCATCTGATTATCCCTTTTAGGTTGC
TGTGGTCCTCACGGATGGTAAGAGTTCTTCTGATATAAGCTTTGTCGAGG
AAGCTTCAAGCAAACTGCTCAATTCAGCTGTTAAAGTGTTAGTGGTTGGT
GTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008851XLOC_008851Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015829-exon-sc0000217-1575043694:67973..68246TCONS_00015829-exon-sc0000217-1575043694:67973..68246Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1575043694:64608..64892TCONS_00015829-exon-sc0000217-1575043694:64608..64892Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1575043694:63841..63898TCONS_00015829-exon-sc0000217-1575043694:63841..63898Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1575043694:62833..62863TCONS_00015829-exon-sc0000217-1575043694:62833..62863Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1575043694:62544..62651TCONS_00015829-exon-sc0000217-1575043694:62544..62651Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1510915933:67973..68246TCONS_00015829-exon-sc0000217-1510915933:67973..68246Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1510915933:64608..64892TCONS_00015829-exon-sc0000217-1510915933:64608..64892Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1510915933:63841..63898TCONS_00015829-exon-sc0000217-1510915933:63841..63898Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1510915933:62833..62863TCONS_00015829-exon-sc0000217-1510915933:62833..62863Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1510915933:62544..62651TCONS_00015829-exon-sc0000217-1510915933:62544..62651Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1491911889:67973..68246TCONS_00015829-exon-sc0000217-1491911889:67973..68246Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1491911889:64608..64892TCONS_00015829-exon-sc0000217-1491911889:64608..64892Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1491911889:63841..63898TCONS_00015829-exon-sc0000217-1491911889:63841..63898Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1491911889:62833..62863TCONS_00015829-exon-sc0000217-1491911889:62833..62863Clytia hemisphaericaexon
TCONS_00015829-exon-sc0000217-1491911889:62544..62651TCONS_00015829-exon-sc0000217-1491911889:62544..62651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:62544..68246 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0190915	0	0	0.67278	0	0.527802	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00015829 vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.838e-18
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1 
Query:  277 ITPIVYNQDVEDLSACNVDLGFIIDESASMTESGYRQAIAFVEKIVSNFTLGPNHTRVSLMTFSTFPFPHFGFNDVQSTDFTSFKNYLATIPYLEGFTYTNQALDLARTTVFNTFNGDRPDYRSVAVVLTDGKSSSDISFVEEASSKLLNSAVKVLVVGV 756
            + PI+ +  +E L+    D+  ++D S S+  + +R   +F+ +IV  F +GP   +++L  +S  P   +  N     D  S    +A +PY  G T T  AL+  R   F T  G RP  R + V++TDGKS  D   VE  S KL +  V++  +G+
Sbjct: 1182 VMPIL-SSGMECLTRAEADIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLN--AHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQDD---VEAPSKKLKDEGVELFAIGI 1335
The following BLAST results are available for this feature:
BLAST of TCONS_00015829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COCA18.838e-1831.25Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL... [more]
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