TCONS_00015872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015872
Unique NameTCONS_00015872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015872 ID=TCONS_00015872|Name=TCONS_00015872|organism=Clytia hemisphaerica|type=transcript|length=340bp
AGCTACAAAAAGACCTATCCAATCTAACAAAATGGGAAAACGATTGGCAG
ATGGAATTCCACCCAGACAAATGTAAGATCCTAACCGTCACTGTTGTAGA
ATCCTACAACATACACAATATCAACCTTGAACTGGTAGAGAAGGCTAAAT
ACCTAGGAGTCACTCTAACTAACTCTAACTTACTTGGAACTCTCACATTA
ATAATGTATGTGCAAAAGCCAACGCTGTTCGATTCTTCCTGCAAAGAAAC
CTTGTTAAAAGCAACTCCGAAACTCGCTTAAAGTGTTACAAAATCTTTAT
TCGCCCAATCTTAGAATATGCAAGCACAGTTTGGGACCCT
Run BLAST on NCBI

transcript from alignment at sc0000217:3162..3501

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015872 ID=TCONS_00015872|Name=TCONS_00015872|organism=Clytia hemisphaerica|type=transcript|length=340bp|location=Sequence derived from alignment at sc0000217:3162..3501 (Clytia hemisphaerica)
AGGGTCCCAAACTGTGCTTGCATATTCTAAGATTGGGCGAATAAAGATTT
TGTAACACTTTAAGCGAGTTTCGGAGTTGCTTTTAACAAGGTTTCTTTGC
AGGAAGAATCGAACAGCGTTGGCTTTTGCACATACATTATTAATGTGAGA
GTTCCAAGTAAGTTAGAGTTAGTTAGAGTGACTCCTAGGTATTTAGCCTT
CTCTACCAGTTCAAGGTTGATATTGTGTATGTTGTAGGATTCTACAACAG
TGACGGTTAGGATCTTACATTTGTCTGGGTGGAATTCCATCTGCCAATCG
TTTTCCCATTTTGTTAGATTGGATAGGTCTTTTTGTAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008862XLOC_008862Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015872-exon-sc0000217-1491911889:3162..3501TCONS_00015872-exon-sc0000217-1491911889:3162..3501Clytia hemisphaericaexon
TCONS_00015872-exon-sc0000217-1510915933:3162..3501TCONS_00015872-exon-sc0000217-1510915933:3162..3501Clytia hemisphaericaexon
TCONS_00015872-exon-sc0000217-1575043694:3162..3501TCONS_00015872-exon-sc0000217-1575043694:3162..3501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:3162..3501 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.10239	2.13424	2.33319	0.461429	2.32081	2.78229	3.45196	0	1.05713	1.18636	1.19921	1.84693	1.4555	0.510293	0.773544	0	1.036	0.344846	0	1.32533	0	0.331187	0	0	4.77521	1.81942	1.9167	1.12619	1.31847	0.127679
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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