TCONS_00015874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015874
Unique NameTCONS_00015874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length933

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015874 ID=TCONS_00015874|Name=TCONS_00015874|organism=Clytia hemisphaerica|type=transcript|length=933bp
CTAAAAACGTCTATGACTGCAATTGCCGCAACAAAGCTACCTGTCCCTTA
AACTGAAAATGCAAGCAATCGGATGTCATATATCAATGCCATATTAAATC
TTCCATTGACGACGCTGGAAAGTACTATATTGGTCTAATGCAACACCTTC
GAAACCAGATGGAACACCCACAAGTTTACCTTGAACCACGAAAAATCTAC
CAACCACATCCAATTATCAAACCACTACTGGAATCTGAAACGAAACCAAT
TCTCTTCTGGGAAATAATCGATCACGCAGCGTCCTACAGAAATGGCTCAA
AAAGCTGCAATTTATGCTTAGCTGAAAAAGTGAACATAATCACCTCTAAA
CGTGAGTTCGTTAACACGAAATCGGAGTTGATTTCAAAATGCCGACACGT
CAATAAATTCCTATCGGAAAATTACCAAACAGTACCCCCAGATGGGTGAT
AATTTTAACATGTTTAATTACAATGcttttatcaaaacattttttattcc
cCTAGACACAATTTTTACCATTCATATATCAGGGAGTTtgtaaacatcga
ccagaaatggcgatcacgaccagcgaccacgaccggcgaccacgaccggc
gaccagatgaATTTGGGTTATCGTGTTTATTTGCTCTCTCCGCCGTAGAG
AATGTCtaaatcaagtcctcagaatactaaaaagtgacctttgaagtaac
cactcattttcttgacaaagtgacacaatttgacaaaattattgACAGAG
CCATTAAGTATGATGTCTGTAAACTTTGTTAGCAccgaatattttaatta
tgctgaatgagatgtctttagtatgaatagatagaacttgtcagtaggaa
aaaagTGGGAAGTCCAGTTTTAGAATTATGAATCTAATCAATTGTTCTAT
TGTCTatatgctgacaaaatgactaatttcgac
Run BLAST on NCBI

protein sequence of TCONS_00015874-protein

>TCONS_00015874-protein ID=TCONS_00015874-protein|Name=TCONS_00015874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MQHLRNQMEHPQVYLEPRKIYQPHPIIKPLLESETKPILFWEIIDHAASY
RNGSKSCNLCLAEKVNIITSKREFVNTKSELISKCRHVNKFLSENYQTVP
PDG
Run BLAST on NCBI

transcript from alignment at sc0000217:69699..70631

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015874 ID=TCONS_00015874|Name=TCONS_00015874|organism=Clytia hemisphaerica|type=transcript|length=933bp|location=Sequence derived from alignment at sc0000217:69699..70631 (Clytia hemisphaerica)
gtcgaaattagtcattttgtcagcatatAGACAATAGAACAATTGATTAG
ATTCATAATTCTAAAACTGGACTTCCCActtttttcctactgacaagttc
tatctattcatactaaagacatctcattcagcataattaaaatattcggT
GCTAACAAAGTTTACAGACATCATACTTAATGGCTCTGTcaataattttg
tcaaattgtgtcactttgtcaagaaaatgagtggttacttcaaaggtcac
tttttagtattctgaggacttgatttaGACATTCTCTACGGCGGAGAGAG
CAAATAAACACGATAACCCAAATtcatctggtcgccggtcgtggtcgccg
gtcgtggtcgctggtcgtgatcgccatttctggtcgatgtttacaAACTC
CCTGATATATGAATGGTAAAAATTGTGTCTAGgggaataaaaaatgtttt
gataaaagCATTGTAATTAAACATGTTAAAATTATCACCCATCTGGGGGT
ACTGTTTGGTAATTTTCCGATAGGAATTTATTGACGTGTCGGCATTTTGA
AATCAACTCCGATTTCGTGTTAACGAACTCACGTTTAGAGGTGATTATGT
TCACTTTTTCAGCTAAGCATAAATTGCAGCTTTTTGAGCCATTTCTGTAG
GACGCTGCGTGATCGATTATTTCCCAGAAGAGAATTGGTTTCGTTTCAGA
TTCCAGTAGTGGTTTGATAATTGGATGTGGTTGGTAGATTTTTCGTGGTT
CAAGGTAAACTTGTGGGTGTTCCATCTGGTTTCGAAGGTGTTGCATTAGA
CCAATATAGTACTTTCCAGCGTCGTCAATGGAAGATTTAATATGGCATTG
ATATATGACATCCGATTGCTTGCATTTTCAGTTTAAGGGACAGGTAGCTT
TGTTGCGGCAATTGCAGTCATAGACGTTTTTAG

Coding sequence (CDS) from alignment at sc0000217:69699..70631

>TCONS_00015874 ID=TCONS_00015874|Name=TCONS_00015874|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000217:69699..70631 (Clytia hemisphaerica)
TCACCCATCTGGGGGTACTGTTTGGTAATTTTCCGATAGGAATTTATTGA
CGTGTCGGCATTTTGAAATCAACTCCGATTTCGTGTTAACGAACTCACGT
TTAGAGGTGATTATGTTCACTTTTTCAGCTAAGCATAAATTGCAGCTTTT
TGAGCCATTTCTGTAGGACGCTGCGTGATCGATTATTTCCCAGAAGAGAA
TTGGTTTCGTTTCAGATTCCAGTAGTGGTTTGATAATTGGATGTGGTTGG
TAGATTTTTCGTGGTTCAAGGTAAACTTGTGGGTGTTCCATCTGGTTTCG
AAGGTGTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008864XLOC_008864Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015874-proteinTCONS_00015874-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015874-exon-sc0000217-1491911889:69699..70631TCONS_00015874-exon-sc0000217-1491911889:69699..70631Clytia hemisphaericaexon
TCONS_00015874-exon-sc0000217-1510915933:69699..70631TCONS_00015874-exon-sc0000217-1510915933:69699..70631Clytia hemisphaericaexon
TCONS_00015874-exon-sc0000217-1575043694:69699..70631TCONS_00015874-exon-sc0000217-1575043694:69699..70631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:69699..70631 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19244	0.573421	0.793856	1.17894	0.594742	0.626631	1.13401	1.23858	0.870166	0.664931	0.74863	0.597743	0.978699	0.903689	0.469199	0.826064	1.20534	0.377044	0.104181	0.728765	1.35814	0.438103	0.649202	0.565886	1.09195	1.07859	0.85044	0.596319	0.658872	0.60955
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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