TCONS_00015877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015877
Unique NameTCONS_00015877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015877 ID=TCONS_00015877|Name=TCONS_00015877|organism=Clytia hemisphaerica|type=transcript|length=539bp
gtttaaaaaatatttcttcagaaatttatattttttagttgCATTTTTAT
ATCACCATGTAAATAGAGTTTATATTAAAGAGTTTTTTAGTTTCGTTATT
TTTAGTTACATTTTTTTACGAGGAGAGTCTTACGCATATAGTTTTTACCC
ATTGACAtgcattttttttggaatttattttttcacGTTTACACATATCA
TATTTGCATACCAAATGTTTTAAGTCTGCCAAAATAATCTGCTGTTGAGT
AAAAAGAGATTGTAAATTTTGAAGATATTCGAATTAGAGGTTTTGTGTTC
GTTGAAAAACCATTCGGGAGTGGAATATTGTTAACCGAAATAACATCAAT
TTTAATTAACCGGGCAATAGTTATAATTTTCAAAGTGAGAACACCACGCT
CTAAAggttgaaaattattttctgatttgaaaattatgatcaaataacaa
ttttataatgtgttgatttttttcttcttcacttttcaACTTCACTTCTC
AGTCTTTGTTGGATTTTCTAATTTatcataatattccac
Run BLAST on NCBI

transcript from alignment at sc0000217:96333..96871

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015877 ID=TCONS_00015877|Name=TCONS_00015877|organism=Clytia hemisphaerica|type=transcript|length=539bp|location=Sequence derived from alignment at sc0000217:96333..96871 (Clytia hemisphaerica)
gtggaatattatgatAAATTAGAAAATCCAACAAAGACTGAGAAGTGAAG
Ttgaaaagtgaagaagaaaaaaatcaacacattataaaattgttatttga
tcataattttcaaatcagaaaataattttcaaccTTTAGAGCGTGGTGTT
CTCACTTTGAAAATTATAACTATTGCCCGGTTAATTAAAATTGATGTTAT
TTCGGTTAACAATATTCCACTCCCGAATGGTTTTTCAACGAACACAAAAC
CTCTAATTCGAATATCTTCAAAATTTACAATCTCTTTTTACTCAACAGCA
GATTATTTTGGCAGACTTAAAACATTTGGTATGCAAATATGATATGTGTA
AACgtgaaaaaataaattccaaaaaaaatgcaTGTCAATGGGTAAAAACT
ATATGCGTAAGACTCTCCTCGTAAAAAAATGTAACTAAAAATAACGAAAC
TAAAAAACTCTTTAATATAAACTCTATTTACATGGTGATATAAAAATGca
actaaaaaatataaatttctgaagaaatattttttaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008867XLOC_008867Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015877-exon-sc0000217-1491911889:96333..96871TCONS_00015877-exon-sc0000217-1491911889:96333..96871Clytia hemisphaericaexon
TCONS_00015877-exon-sc0000217-1510915933:96333..96871TCONS_00015877-exon-sc0000217-1510915933:96333..96871Clytia hemisphaericaexon
TCONS_00015877-exon-sc0000217-1575043694:96333..96871TCONS_00015877-exon-sc0000217-1575043694:96333..96871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:96333..96871 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.322525	0	0	0.11909	0	0.114566	0.138219	0.258798	0.362381	0.33665	0.435681	0.1432	1.00101	0.222762	0.915702	0.982688	0.645649	0.579048	0	0	0.103945	0.152102	0.123267	0	0	0	0	0.157326	0	0.121574
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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