TCONS_00015883 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015883
Unique NameTCONS_00015883
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015883 ID=TCONS_00015883|Name=TCONS_00015883|organism=Clytia hemisphaerica|type=transcript|length=294bp
TTAATGTTCAATGATGTATTTCTTTCACATTACTTCTTATACATACAATA
TAATTTCCATTCTCATTTCTGACAAACGAAATCACAACAGACGTTTGCAT
TGTAGACATGATTGCTGACCTTAGGGTCAGTGCAGTGCAATATGACCCCC
TTTCGTTCACACCAAATCCAAAAGATACAGCTTGTCAAGGTGAATCGACA
CTTTGGAGCAGCCGATTTGCAACCATTGTAAGTACCTTTTTTACATGGAG
TCCACCTTTCAACGGTACCAGTACCCCGTTTTTCTCGAGTTTct
Run BLAST on NCBI

transcript from alignment at sc0000217:330190..330483

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015883 ID=TCONS_00015883|Name=TCONS_00015883|organism=Clytia hemisphaerica|type=transcript|length=294bp|location=Sequence derived from alignment at sc0000217:330190..330483 (Clytia hemisphaerica)
agAAACTCGAGAAAAACGGGGTACTGGTACCGTTGAAAGGTGGACTCCAT
GTAAAAAAGGTACTTACAATGGTTGCAAATCGGCTGCTCCAAAGTGTCGA
TTCACCTTGACAAGCTGTATCTTTTGGATTTGGTGTGAACGAAAGGGGGT
CATATTGCACTGCACTGACCCTAAGGTCAGCAATCATGTCTACAATGCAA
ACGTCTGTTGTGATTTCGTTTGTCAGAAATGAGAATGGAAATTATATTGT
ATGTATAAGAAGTAATGTGAAAGAAATACATCATTGAACATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008873XLOC_008873Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015883-exon-sc0000217-1491911889:330190..330483TCONS_00015883-exon-sc0000217-1491911889:330190..330483Clytia hemisphaericaexon
TCONS_00015883-exon-sc0000217-1510915933:330190..330483TCONS_00015883-exon-sc0000217-1510915933:330190..330483Clytia hemisphaericaexon
TCONS_00015883-exon-sc0000217-1575043694:330190..330483TCONS_00015883-exon-sc0000217-1575043694:330190..330483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:330190..330483 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.33018	3.24745	4.71326	4.15007	2.80684	1.3308	4.81666	1.5031	10.8743	7.38657	2.95218	19.1293	2.49165	1.72507	61.4571	39.3181	7.81237	10.8901	12.8327	8.33494	0.804953	0	0.477291	0.867853	0	0	0	0	0.462031	0.470736
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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