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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015896 ID=TCONS_00015896|Name=TCONS_00015896|organism=Clytia hemisphaerica|type=transcript|length=3019bp
GCCGACTATACCCTATTATTATATACCACTACTATAGAatatacaaaaaa
tgaaaaaaaatgatgcTTTTCTTGAATTAGACCTTCTCAATTCAACTCTA
CCCTGCCATCTATACTATACAAAATTGTTATtgtaaaatgtatcaaaaga
aattttaaaataaaaactaaaattcaAGGGTTTAGTAATCTCACTCTAAA
GTCCAATTGCTTTAACCGCGCACTCAATTTTGCGACTTTGGTGTAAACCA
CTCTAAATAGAGTTAGTTTGAAAGACTATAATATGGTTTTCACAGGGCAG
CAAAGAAATGGATTTCAGACCATAGCCAGATTCTTTTTCTTAGATATTGC
TAATTATTACGCAAGGCAAAAACAATATTTCTCAGGCAAGACAAAAAGAT
CTCGAAATCAAATTGCTCAGCCTTGGACGTTTTTCCTAGGACCCATGGCG
GAAGGTATCTGTAGACAAACCAATTATCCGACGATCTCATTATCAAAATG
CGCTGGCGGCGGTAGATCAACTATAAAAGTGGAGAAACTGGATCTTAAGA
TGAATTACATTTGACTTAACTGCTTGAAAAATGAGAATAGTACACTTTTT
CAGGGCGTAGAAAATCTTCTACCCACCAAAAGccaaactgaaataaaaat
cGTTCTCTttatacaatcatggacaaaatatttgagacaaagaggacttt
taaaaaccacaaatgatttttaagcaacATTtggaaagtagaattttaac
tcttaacatgagacttaaagactttaaaagctcaaatttgctccaataag
gcttggaatatagtctagaagccaccgaacccctccaaaatcgaaatgtt
CAATGAaggaaagtggaagtgctaaaatagcaattctcgtccgaacttta
aattataaaaaacgttaaaaatacactaaaatctgaATATGTTTCGACCA
TAATTGTAGTCTACAGGGCATTCACAAACACAAATTGCTGAATATACATA
AAGTTAAAACTAGTATGGaagtaaaataataaaatatatacTGTAGTAAG
ATTAGAAGTacataaaaaaacttaaaacagtTTAGTTAAAAACAAACGAT
CTAAAAATTTCCCTATTTACCAGCGTGGAGCGCGCGAAGTCCTTTTACTA
TCATCATTATTTTGACTGTAGTCATCATAATTATCAGATTGAAAAGTCTG
ATTATCTCTCTGTGAACGCCGATATTCCCGATGTCGCTTATAATCGTCAT
CCCGATATCTATAATTGTTATTATGTTGACGCCCTCGATGATAATGGTGG
CGGTTTCGATCGTCTCTATTATCATAGTAATTATCATAATAGTCCCTACG
CCCGTCTTTGTTGGGCGGTCTAAAATTTCGATCCCAATCATCACGCCCGT
GACGTTCTTGTTGTTGTAACGGCCGTGTTGAATCGTAATTgtcgttttga
aaattttcatctgAATTGTAAAGTGATTTGTCTGATATGAAATCTTCACC
ATTTTTCCATTGCTCGTAACccctgaaaaacaaaatttttctttgcgGTC
AGAGCATAAACTATGGCAAAAGTAATTAAGGAACGTAATTCACAGTTTTA
TAAACTTTATTCTAGAAGAACTGTTCGATGAAGAAGACTCCAAAACTTCG
AACTCTCAAAATAAACATTAACAAAAACACAGTGGGTGATTTGTATGTAA
GAAACTAGTTGTGTTATTTCTGTAAGGTGTGTATACAAAATTCGATCGTG
CAAGTGTTGTTTGATTGGTTATATAAGCATATATCGAGATATATAAAGAA
TTATCGCTTGAACAAAAATCCTAGAGCTACAAATACAAATGCATTGTTCA
GCCAAAAATAATACGTAAAAGGTTTTCGCTTCTGGCGTTTTGAAGGTTTG
GATACAAGTTTTTTGTCTTTCGATTTGCTTGGTTTTGTCTTAGAGGTATC
TTTGTCCATATCTTTCGTAGATGAGTTTGTTGCAGTTTTCGGCTTATTct
tctttttacttttcttatttttatctttaggtttttcaacgttttcctCG
GTAACCGGTTCTTTTCTATTCTTCTCTTTTTGGAGATGTTTGTTTTGAGA
CACCAATTCAATCATTGTCTCCAACCTTAATTCTGGTTGACGTAANTGTT
TTGAGACACCAATTCAATCATTGTCTCTAACGTTAATTCTGGTTGACGTA
TTAGTACATTACGTAATGCATCGCTTGCATATTTGTCAATCACGTGATTT
ACAATCTCAACATCAGTGTTCACAAAACTACACTTTTCGGCTACCGTTCT
TAACCGATCGACGTATTCTGCGAAACCTTCACCGGCACGAATAAGGGTCC
GTCGAAAAACGAAACACCGATGGTAAGACACATTCGTCGAAAGCTTATCA
CCATGGAAATACAAAAACAAATCCGTTAGTATTGAGTCATAATCCTCTCC
AGAATGATCAATGGATTGATAAATTCCTTGCAATTCCTTTCCAGCAAAGC
GAAACAAAGACTGTTCCTTTCTAGCACCAGTATACTGAAGCTTATTAGAA
AACTCTTCGAATTTGTGAATCCATTCGTCCCATGATGCACTCAAATCGAT
AGTTTCTCTCACATTGAACGCAGACGGTCTGGTTTCATTATACTCCTCGT
AACCGCTAGTAAAGAAAATGAGGAATATTGTTTTGTATGGAAGGAATAGG
AATATTGTATGCATATCGTCATCTGATTGGTTTGTTGATCGACATTCTTC
GTTCTGATGTCTCATTTGATGAATGTAGGTAGCAAAACGGCGCGCTGGAG
AATTCCAATGGTAGATCATGTTTGTTTACTTTCAGGTCCTCTCCGTGTTG
CAAATTTTACTACCCATATTCTTGAGTATGTGGtcatatttttgaaagat
ttcaatGGCAGATAACTTTATAGTAACGCTCTAATTACTTATCGAGCACT
CTATGGGGAGAAGATAAAACTCTCTACAAATGGCAGATTGTATTGTTTAC
CAGAGTGAAAAGAATAAAT Run BLAST on NCBI transcript from alignment at sc0000222:146491..149586+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015896 ID=TCONS_00015896|Name=TCONS_00015896|organism=Clytia hemisphaerica|type=transcript|length=3096bp|location=Sequence derived from alignment at sc0000222:146491..149586+ (Clytia hemisphaerica)
GCCGACTATACCCTATTATTATATACCACTACTATAGAatatacaaaaaa
tgaaaaaaaatgatgcTTTTCTTGAATTAGACCTTCTCAATTCAACTCTA
CCCTGCCATCTATACTATACAAAATTGTTATtgtaaaatgtatcaaaaga
aattttaaaataaaaactaaaattcaAGGGTTTAGTAATCTCACTCTAAA
GTCCAATTGCTTTAACCGCGCACTCAATTTTGCGACTTTGGTGTAAACCA
CTCTAAATAGAGTTAGTTTGAAAGACTATAATATGGTTTTCACAGGGCAG
CAAAGAAATGGATTTCAGACCATAGCCAGATTCTTTTTCTTAGATATTGC
TAATTATTACGCAAGGCAAAAACAATATTTCTCAGGCAAGACAAAAAGAT
CTCGAAATCAAATTGCTCAGCCTTGGACGTTTTTCCTAGGACCCATGGCG
GAAGGTATCTGTAGACAAACCAATTATCCGACGATCTCATTATCAAAATG
CGCTGGCGGCGGTAGATCAACTATAAAAGTGGAGAAACTGGATCTTAAGA
TGAATTACATTTGACTTAACTGCTTGAAAAATGAGAATAGTACACTTTTT
CAGGGCGTAGAAAATCTTCTACCCACCAAAAGccaaactgaaataaaaat
cGTTCTCTttatacaatcatggacaaaatatttgagacaaagaggacttt
taaaaaccacaaatgatttttaagcaacATTtggaaagtagaattttaac
tcttaacatgagacttaaagactttaaaagctcaaatttgctccaataag
gcttggaatatagtctagaagccaccgaacccctccaaaatcgaaatgtt
CAATGAaggaaagtggaagtgctaaaatagcaattctcgtccgaacttta
aattataaaaaacgttaaaaatacactaaaatctgaATATGTTTCGACCA
TAATTGTAGTCTACAGGGCATTCACAAACACAAATTGCTGAATATACATA
AAGTTAAAACTAGTATGGaagtaaaataataaaatatatacTGTAGTAAG
ATTAGAAGTacataaaaaaacttaaaacagtTTAGTTAAAAACAAACGAT
CTAAAAATTTCCCTATTTACCAGCGTGGAGCGCGCGAAGTCCTTTTACTA
TCATCATTATTTTGACTGTAGTCATCATAATTATCAGATTGAAAAGTCTG
ATTATCTCTCTGTGAACGCCGATATTCCCGATGTCGCTTATAATCGTCAT
CCCGATATCTATAATTGTTATTATGTTGACGCCCTCGATGATAATGGTGG
CGGTTTCGATCGTCTCTATTATCATAGTAATTATCATAATAGTCCCTACG
CCCGTCTTTGTTGGGCGGTCTAAAATTTCGATCCCAATCATCACGCCCGT
GACGTTCTTGTTGTTGTAACGGCCGTGTTGAATCGTAATTgtcgttttga
aaattttcatctgAATTGTAAAGTGATTTGTCTGATATGAAATCTTCACC
ATTTTTCCATTGCTCGTAACccctgaaaaacaaaatttttctttgcgGTC
AGAGCATAAACTATGGCAAAAGTAATTAAGGAACGTAATTCACAGTTTTA
TAAACTTTATTCTAGAAGAACTGTTCGATGAAGAAGACTCCAAAACTTCG
AACTCTCAAAATAAACATTAACAAAAACACAGTGGGTGATTTGTATGTAA
GAAACTAGTTGTGTTATTTCTGTAAGGTGTGTATACAAAATTCGATCGTG
CAAGTGTTGTTTGATTGGTTATATAAGCATATATCGAGATATATAAAGAA
TTATCGCTTGAACAAAAATCCTAGAGCTACAAATACAAATGCATTGTTCA
GCCAAAAATAATACGTAAAAGGTTTTCGCTTCTGGCGTTTTGAAGGTTTG
GATACAAGTTTTTTGTCTTTCGATTTGCTTGGTTTTGTCTTAGAGGTATC
TTTGTCCATATCTTTCGTAGATGAGTTTGTTGCAGTTTTCGGCTTATTct
tctttttacttttcttatttttatctttaggtttttcaacgttttcctCG
GTAACCGGTTCTTTTCTATTCTTCTCTTTTTGGAGATGTTTGTTTTGAGA
CACCAATTCAATCATTGTCTCCAACCTTAATTCTGGTTGACGTAANTGTT
TTGAGACACCAATTCAATCATTGTCTCTAACGTTAATTCTGGTTGACGTA
TTAGTACATTACGTAATGCATCGCTTGCATATTTGTCAATCACGTGATTT
ACAATCTCAACATCAGTGTTCACAAAACTACACTTTTCGGCTACCGTTCT
TAACCGATCGACGTATTCTGCGAAACCTTCACCGGCACGAATAAGGGTCC
GTCGAAAAACGAAACACCGATGGTAAGACACATTCGTCGAAAGCTTATCA
CCATGGAAATACAAAAACAAATCCGTTAGTATTGAGTCATAATCCTCTCC
AGAATGATCAATGGATTGATAAATTCCTTGCAATTCCTTTCCAGCAAAGC
GAAACAAAGACTGTTCCTTTCTAGCACCAGTATACTGAAGCTTATTAGAA
AACTCTTCGAATTTGTGAATCCATTCGTCCCATGATGCACTCAAATCGAT
AGTTTCTCTCACATTGAACNATTAGAAAACTCTTCGAATTTGTGAATCCA
TTCGTCCCATGATGCACTCAAATCGATAGTTTTTCTCACATTGAACGCAG
ACGGTCTGGTTTCATTATACTCCTCGTAACCGCTAGTAAAGAAAATGAGG
AATATTGTTTTGTATGGAAGGAATAGGAATATTGTATGCATATCGTCATC
TGATTGGTTTGTTGATCGACATTCTTCGTTCTGATGTCTCATTTGATGAA
TGTAGGTAGCAAAACGGCGCGCTGGAGAATTCCAATGGTAGATCATGTTT
GTTTACTTTCAGGTCCTCTCCGTGTTGCAAATTTTACTACCCATATTCTT
GAGTATGTGGtcatatttttgaaagatttcaatGGCAGATAACTTTATAG
TAACGCTCTAATTACTTATCGAGCACTCTATGGGGAGAAGATAAAACTCT
CTACAAATGGCAGATTGTATTGTTTACCAGAGTGAAAAGAATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015896-exon-sc0000222-1491911889:146491..149102 | TCONS_00015896-exon-sc0000222-1491911889:146491..149102 | Clytia hemisphaerica | exon |
| TCONS_00015896-exon-sc0000222-1510915933:146491..149102 | TCONS_00015896-exon-sc0000222-1510915933:146491..149102 | Clytia hemisphaerica | exon |
| TCONS_00015896-exon-sc0000222-1575043694:146491..149102 | TCONS_00015896-exon-sc0000222-1575043694:146491..149102 | Clytia hemisphaerica | exon |
| TCONS_00015896-exon-sc0000222-1491911889:149180..149586 | TCONS_00015896-exon-sc0000222-1491911889:149180..149586 | Clytia hemisphaerica | exon |
| TCONS_00015896-exon-sc0000222-1510915933:149180..149586 | TCONS_00015896-exon-sc0000222-1510915933:149180..149586 | Clytia hemisphaerica | exon |
| TCONS_00015896-exon-sc0000222-1575043694:149180..149586 | TCONS_00015896-exon-sc0000222-1575043694:149180..149586 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000222 | supercontig | sc0000222:146491..149586 + |
Blast
The following BLAST results are available for this feature:
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