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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015901 ID=TCONS_00015901|Name=TCONS_00015901|organism=Clytia hemisphaerica|type=transcript|length=2023bp
aaaaaaagttgatgaccaaacaatattttctttaaaaatagcAAAAGCCT
GAAAGCTAATGGTTATATCTTTTTATCTCAATTACTCAAAGGATTCAGCT
TTGAATGAATTCATTGTGATACCATCGTTCTACTGAGgaaatttataaac
aaaacctACTCATTTCAGATGTTGATTATATTGTGGATATTGTGAAAACT
TGAAAGCTTGCTAGACAGTACAGAAATCAAAGTGCTACCGTTCAGTTGGT
TCTCAGTTCATAACAAAAAGAGGCAGAAATTGTATGATGTAGATTCATCA
GGCAAGAATAAATCAAGGACATATCAAACTCCTTCCACCTCAAAAATGGC
TGCTGAAAATATGACAATTGAAGAAAAGATGTCTTGGCAAAATGAGATGT
TGAAGCGACTGCAAAACACAGCTGCTCCAGTTCCCATAAAGGTAGCCTGT
ACGATAACACCACCTGGTAAACCAGATTATTTAGGCGAGGAATATCATGG
AACCATCACaaaagaagaagagaaaaagattttggagGGAAAGAATGGAC
GTTATATTGTTCGTGACAGCTCTTCTTCAAAGCCGCATGAATATACCCTT
GCATTTAATTTTGATGAGAGTTTTCAGTACGTCAAATTGGTTTACAATCC
AGGGACAAAAGAGTTTAGGACAGATTCAAATGCTAGTAAAAATGGTTTTA
AATCAATCCTTGCTTTGATTACAGATGTAGTAAATTTGTACCAAAAACTA
AAGATATCTTCAGGTGGAGGAGGTAGTGTTAAAAGTAGTAAATCCTCAAG
CGTAAGCAAATCGCATAAGTTCAAAACATACTCTTATAAACACCCTAAAT
GGTGTGATATTTGTGGAAACTTTTTATGGGGCTTAGTAAATCAAGGAGAA
AAATGCAAAGATTGTGGTATAAACTGTCACAAATCTTGTCGGGCAGAAGC
TCCAATGCCTTGTTCTCCAATCAATAATAATTATAAAAGAGGAACTACtc
agaaagaaaagaagagcTCAAATCCAGAGAAGGATGATGACCCAAATTAC
ATAGTAATATCACCGAGAAATCCAGTTTTTGATATGTGTGATTATTTTAA
GAAATGCTCCAGATTCATTTCTGCATTCAATGTAAGGGACAGTTTCATTG
ATATGAGAAGCAATATGACAAGATGTTTTTGTGATGAATGTATTGCTCAG
ACTTCTCACTCAGACCAAAGTAATGTAGGGATTAAACATTTAGAACAATG
GACACGCTTCCAATTTGAATGGCAAGAGGATAAGCTAAAGCGTAATTTGG
AAGACTGGGAAGTAGTCTATTTTGCAGTTAACCCTAAATATGTGAGAGAT
CTAATAAAAGGTATATTTAACCCTCCAGATTTTGAAGAAATCGATGAGTT
TCATGTTGCACCATCTTTGGCTTATACTACCCAGGACATGGAAAATGAGA
ATTGGTCATATCAATTTGCTGATACCACAACAGGAGGTCAACTTTACGCT
CAAACTGTATTAGAGGCTTACTTGAGACCTGAAAGCTATGAGGTAATTCC
AAGTGATAGTGAAATTGATGGAAGTTCACCGTCAAATGGTGATATTGATG
AACCTCAAATGGTTCCTGTACACTGGAAAGCCAAATACAAGAAAGATCTT
TATCCTAAATCAATCCTGGTTAAAATCTttgagaaataatttttttcagt
ctttgaaaacttttatacttttttcacttaattttcttaaacatgatttt
gattgaattttgaatatacttatttttatattgatcattttttaatatta
tttcaTACTTAATTCAATTTTGCCTATTTGGCTGCTAATATATATGGGTG
TATTTTGGCTGAATTTGGTCTGGATATTTAAAAATCACATGTTTTATATT
TCACGTCAAActttggaaaattctttttgtccACCAACCCTTGTTGTTCT
GTTCTTtgcaagatttttttattttaaaatatttattgataCTTACACTA
ATCTAGTAAATATTGGTCTGTTG Run BLAST on NCBI protein sequence of TCONS_00015901-protein >TCONS_00015901-protein ID=TCONS_00015901-protein|Name=TCONS_00015901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp
MAAENMTIEEKMSWQNEMLKRLQNTAAPVPIKVACTITPPGKPDYLGEEY
HGTITKEEEKKILEGKNGRYIVRDSSSSKPHEYTLAFNFDESFQYVKLVY
NPGTKEFRTDSNASKNGFKSILALITDVVNLYQKLKISSGGGGSVKSSKS
SSVSKSHKFKTYSYKHPKWCDICGNFLWGLVNQGEKCKDCGINCHKSCRA
EAPMPCSPINNNYKRGTTQKEKKSSNPEKDDDPNYIVISPRNPVFDMCDY
FKKCSRFISAFNVRDSFIDMRSNMTRCFCDECIAQTSHSDQSNVGIKHLE
QWTRFQFEWQEDKLKRNLEDWEVVYFAVNPKYVRDLIKGIFNPPDFEEID
EFHVAPSLAYTTQDMENENWSYQFADTTTGGQLYAQTVLEAYLRPESYEV
IPSDSEIDGSSPSNGDIDEPQMVPVHWKAKYKKDLYPKSILVKIFEK Run BLAST on NCBI transcript from alignment at sc0000222:239533..242648+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015901 ID=TCONS_00015901|Name=TCONS_00015901|organism=Clytia hemisphaerica|type=transcript|length=3116bp|location=Sequence derived from alignment at sc0000222:239533..242648+ (Clytia hemisphaerica)
aaaaaaagttgatgaccaaacaatattttctttaaaaatagcAAAAGCCT
GAAAGCTAATGGTTATATCTTTTTATCTCAATTACTCAAAGGATTCAGCT
TTGAATGAATTCATTGTGATACCATCGTTCTACTGAGgaaatttataaac
aaaacctACTCATTTCAGATGTTGATTATATTGTGGATATTGTGAAAACT
TGAAAGCTTGCTAGACAGTACAGAAATCAAAGTGCTACCGTTCAGTTGGT
TCTCAGTTCATAACAAAAAGAGGCAGAAATTGTATGATGTAGATTCATCA
GGCAAGAATAAATCAAGGACATATCAAACTCCTTCCACCTCAAAAATGGC
TGCTGAAAATATGACAATTGAAGAAAAGATGTCTTGGCAAAATGAGATGT
TGAAGCGACTGCAAAACACAGCTGCTCCAGTTCCCATAAAGGTAGCCTGT
ACGATAACACCACCTGGTAAACCAGATTATTTAGGCGAGGAATATCATGG
AACCATCACaaaagaagaagagaaaaagattttggagGGAAAGAATGGAC
GTTATATTGTTCGTGACAGCTCTTCTTCAAAGCCGCATGAATATACCCTT
GCATTTAATTTTGATGAGAGTTTTCAGTACGTCAAATTGGTTTACAATCC
AGGGACAAAAGAGTTTAGGACAGATTCAAATGCTAGTAAAAATGGTTTTA
AATCAATCCTTGCTTTGATTACAGATGTAGTAAATTTGTACCAAAAACTA
AAGATATCTTCAGGTGGAGGAGGTAGTGTTAAAAGTAGTAAATCCTCAAG
CGTAAGCAAATCGCATAAGTTCAAAACATACTCTTATAAACACCCTAAAT
GGTGTGATATTTGTGGAAACTTTTTATGGGGCTTAGTAAATCAAGGAGAA
AAATGCAAAGATTGTGGTATAAACTGTCACAAATCTTGTCGGGCAGAAGC
TCCAATGCCTTGTTCTCCAATCAATAATAATTATAAAAGAGGAACTACtc
agaaagaaaagaagagcTCAAATCCAGAGAAGGATGATGACCCAAATTAC
ATAGTAATATCACCGAGAAATCCAGTTTTTGATATGTGTGATTATTTTAA
GAAATGCTCCAGATTCATTTCTGCATTCAATGTAAGGGACAGTTTCATTG
ATATGAGAAGCAATATGACAAGATGTTTTTGTGATGAATGTATTGCTCAG
ACTTCTCACTCAGACCAAAGTAATGTAGGGATTAAACATTTAGAACAATG
GACACGCTTCCAATTTGAATGGCAAGAGGATAAGCTAAAGCGTAATTTGG
AAGACTGGGAAGTAGTCTATTTTGCAGTTAACCCTAAATATGTGAGAGAT
CTAATAAAAGGTATATTTAACCCTCCAGATTTTGAAGAAATCGATGAGTT
TCATGTTGCACCATCTTTGGCTTATACTACCCAGGACATGGAAAATGAGA
ATTGGTCATATCAATTTGCTGATACCACAACAGGAGGCCAACTANCAGGA
CATGGAAAATGAGAATTGGTCATATCAATTTGCTGATACCACAACAGGAG
GTCAACTTTACGCTCAAACTGTATTAGAGGCTTACTTGAGACCTGAAAGC
TATGAGGTAATTCCAAGTGATAGTGAAATTGATGGAAGTTCACCGTCAAA
TGGTGATATTGATGAACCTCAAATGGTTCCTGTACACTGGAAAGCCAAAT
ACAAGAAAGATCTTTATCCTAAATCAATCCTGGTTAAAATCtttgagaaa
taattatttcagtctttgaaaacttttatatttttttNTTTTAAATCAAT
CCTTGCTTTGATTACAGATGTAGTAAATTTGTACCAAAAACTAAAGATAT
CTTCAGGTGGAGGAGGtagtgttaaaagtaataaatcCTCAAGCGTAAGC
AAATCGCATAAGTTCAAAACATACTCTTATAAACACCCTAAATGGTGTGA
TATTTGTGGAAACTTTTTATGGGGCTTAGTAAATCAAGGAGAAAAATGCA
AAGATTGTGGTATAAACTGTCACAAATCTTGTCGGGCAGAAGCTCCAATG
CCTTGTTCTCCAATCAATAATAATTATAAAAGAGGAACTACtcagaaaga
aaagaagagcTCAAATCCAGAGAAGGATGATGACCCAAATTACATAGTAA
TATCACCGAGAAATCCAGTTTTTGATATGTGTGATTATTTTAAGAAATGC
TCCAGATTCATTTCTGCATTCAATGTAAGGGACAGTTTCATTGATATGAG
AAGCAATATGACAAGATGTTTTTGTGATGAATGTATTGCTCAGACTTCTC
ACTCAGACCAAAGTAATGTAGGGATTAAACATTTAGAACAATGGACACGC
TTCCAATTTGAATGGCAAGAGGATAAGCTAAAGCGTAATTTGGAAGACTG
GGAAGTAGTCTATTTTGCAGTTAACCCTAAATATGTGAGAGATCTAATAA
AAGGTATATTTAACCCTCCAGATTTTGAAGAAATCGATGAGTTTCATGTT
GCACCATCTCTGGCTTATACTACCCAGGACATGGAAAATGAGAATTGGTC
ATATCAATTTGCTGATACCACAACAGGAGGTCAACTTTACGCTCAAACTG
TATTAGAGGCTTACTTGAGACCTGAAAGCTATGAGGTAATTCCAAGTGAT
AGTGAAATTGATGGAAGTTCACCGTCAAATGGTGATATTGATGAACCTCA
AATGGTTCCTGTACACTGGAAAGCCAAATACAAGAAAGATCTTTATCCTA
AATCAATCCTGGTTAAAATCTttgagaaataatttttttcagtctttgaa
aacttttatacttttttcacttaattttcttaaacatgattttgattgaa
ttttgaatatacttatttttatattgatcattttttaatattatttcaTA
CTTAATTCAATTTTGCCTATTTGGCTGCTAATATATATGGGTGTATTTTG
GCTGAATTTGGTCTGGATATTTAAAAATCACATGTTTTATATTTCACGTC
AAActttggaaaattctttttgtccACCAACCCTTGTTGTTCTGTTCTTt
gcaagatttttttattttaaaatatttattgataCTTACACTAATCTAGT
AAATATTGGTCTGTTG Coding sequence (CDS) from alignment at sc0000222:239533..242648+ >TCONS_00015901 ID=TCONS_00015901|Name=TCONS_00015901|organism=Clytia hemisphaerica|type=CDS|length=2688bp|location=Sequence derived from alignment at sc0000222:239533..242648+ (Clytia hemisphaerica)
ATGGCTGCTGAAAATATGACAATTGAAGAAAAGATGTCTTGGCAAAATGA
GATGTTGAAGCGACTGCAAAACACAGCTGCTCCAGTTCCCATAAAGGTAG
CCTGTACGATAACACCACCTGGTAAACCAGATTATTTAGGCGAGGAATAT
CATGGAACCATCACaaaagaagaagagaaaaagattttggagGGAAAGAA
TGGACGTTATATTGTTCGTGACAGCTCTTCTTCAAAGCCGCATGAATATA
CCCTTGCATTTAATTTTGATGAGAGTTTTCAGTACGTCAAATTGGTTTAC
AATCCAGGGACAAAAGAGTTTAGGACAGATTCAAATGCTAGTAAAAATGG
TTTTAAATCAATCCTTGCTTTGATTACAGATGTAGTAAATTTGTACCAAA
AACTAAAGATATCTTCAGGTGGAGGAGGTAGTGTTAAAAGTAGTAAATCC
TCAAGCGTAAGCAAATCGCATAAGTTCAAAACATACTCTTATAAACACCC
TAAATGGTGTGATATTTGTGGAAACTTTTTATGGGGCTTAGTAAATCAAG
GAGAAAAATGCAAAGATTGTGGTATAAACTGTCACAAATCTTGTCGGGCA
GAAGCTCCAATGCCTTGTTCTCCAATCAATAATAATTATAAAAGAGGAAC
TACtcagaaagaaaagaagagcTCAAATCCAGAGAAGGATGATGACCCAA
ATTACATAGTAATATCACCGAGAAATCCAGTTTTTGATATGTGTGATTAT
TTTAAGAAATGCTCCAGATTCATTTCTGCATTCAATGTAAGGGACAGTTT
CATTGATATGAGAAGCAATATGACAAGATGTTTTTGTGATGAATGTATTG
CTCAGACTTCTCACTCAGACCAAAGTAATGTAGGGATTAAACATTTAGAA
CAATGGACACGCTTCCAATTTGAATGGCAAGAGGATAAGCTAAAGCGTAA
TTTGGAAGACTGGGAAGTAGTCTATTTTGCAGTTAACCCTAAATATGTGA
GAGATCTAATAAAAGGTATATTTAACCCTCCAGATTTTGAAGAAATCGAT
GAGTTTCATGTTGCACCATCTTTGGCTTATACTACCCAGGACATGGAAAA
TGAGAATTGGTCATATCAATTTGCTGATACCACAACAGGAGGTCAACTTT
ACGCTCAAACTGTATTAGAGGCTTACTTGAGACCTGAAAGCTATGAGGTA
ATTCCAAGTGATAGTGAAATTGATGGAAGTTCACCGTCAAATGGTGATAT
TGATGAACCTCAAATGGTTCCTGTACACTGGAAAGCCAAATACAAGAAAG
ATCTTTATCCTAAATCAATCCTGGTTAAAATCTttgagaaataaATGGCT
GCTGAAAATATGACAATTGAAGAAAAGATGTCTTGGCAAAATGAGATGTT
GAAGCGACTGCAAAACACAGCTGCTCCAGTTCCCATAAAGGTAGCCTGTA
CGATAACACCACCTGGTAAACCAGATTATTTAGGCGAGGAATATCATGGA
ACCATCACaaaagaagaagagaaaaagattttggagGGAAAGAATGGACG
TTATATTGTTCGTGACAGCTCTTCTTCAAAGCCGCATGAATATACCCTTG
CATTTAATTTTGATGAGAGTTTTCAGTACGTCAAATTGGTTTACAATCCA
GGGACAAAAGAGTTTAGGACAGATTCAAATGCTAGTAAAAATGGTTTTAA
ATCAATCCTTGCTTTGATTACAGATGTAGTAAATTTGTACCAAAAACTAA
AGATATCTTCAGGTGGAGGAGGTAGTGTTAAAAGTAGTAAATCCTCAAGC
GTAAGCAAATCGCATAAGTTCAAAACATACTCTTATAAACACCCTAAATG
GTGTGATATTTGTGGAAACTTTTTATGGGGCTTAGTAAATCAAGGAGAAA
AATGCAAAGATTGTGGTATAAACTGTCACAAATCTTGTCGGGCAGAAGCT
CCAATGCCTTGTTCTCCAATCAATAATAATTATAAAAGAGGAACTACtca
gaaagaaaagaagagcTCAAATCCAGAGAAGGATGATGACCCAAATTACA
TAGTAATATCACCGAGAAATCCAGTTTTTGATATGTGTGATTATTTTAAG
AAATGCTCCAGATTCATTTCTGCATTCAATGTAAGGGACAGTTTCATTGA
TATGAGAAGCAATATGACAAGATGTTTTTGTGATGAATGTATTGCTCAGA
CTTCTCACTCAGACCAAAGTAATGTAGGGATTAAACATTTAGAACAATGG
ACACGCTTCCAATTTGAATGGCAAGAGGATAAGCTAAAGCGTAATTTGGA
AGACTGGGAAGTAGTCTATTTTGCAGTTAACCCTAAATATGTGAGAGATC
TAATAAAAGGTATATTTAACCCTCCAGATTTTGAAGAAATCGATGAGTTT
CATGTTGCACCATCTTTGGCTTATACTACCCAGGACATGGAAAATGAGAA
TTGGTCATATCAATTTGCTGATACCACAACAGGAGGTCAACTTTACGCTC
AAACTGTATTAGAGGCTTACTTGAGACCTGAAAGCTATGAGGTAATTCCA
AGTGATAGTGAAATTGATGGAAGTTCACCGTCAAATGGTGATATTGATGA
ACCTCAAATGGTTCCTGTACACTGGAAAGCCAAATACAAGAAAGATCTTT
ATCCTAAATCAATCCTGGTTAAAATCTttgagaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015901-exon-sc0000222-1491911889:239533..241018 | TCONS_00015901-exon-sc0000222-1491911889:239533..241018 | Clytia hemisphaerica | exon |
| TCONS_00015901-exon-sc0000222-1510915933:239533..241018 | TCONS_00015901-exon-sc0000222-1510915933:239533..241018 | Clytia hemisphaerica | exon |
| TCONS_00015901-exon-sc0000222-1575043694:239533..241018 | TCONS_00015901-exon-sc0000222-1575043694:239533..241018 | Clytia hemisphaerica | exon |
| TCONS_00015901-exon-sc0000222-1491911889:242112..242648 | TCONS_00015901-exon-sc0000222-1491911889:242112..242648 | Clytia hemisphaerica | exon |
| TCONS_00015901-exon-sc0000222-1510915933:242112..242648 | TCONS_00015901-exon-sc0000222-1510915933:242112..242648 | Clytia hemisphaerica | exon |
| TCONS_00015901-exon-sc0000222-1575043694:242112..242648 | TCONS_00015901-exon-sc0000222-1575043694:242112..242648 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000222 | supercontig | sc0000222:239533..242648 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0035556 | intracellular signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0035556 |
intracellular signal transduction |
Blast
The following BLAST results are available for this feature:
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