TCONS_00015915 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015915
Unique NameTCONS_00015915
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015915 ID=TCONS_00015915|Name=TCONS_00015915|organism=Clytia hemisphaerica|type=transcript|length=2527bp
ATTTCGCAGTCGGCTGTTTCAGGAGTTTTTCCTTTTTATCGATTCCCGAC
ATTTATTTTCGCaatctatttttaaaaactaggttttttttttttttaat
ctcatAATAATAACATTGTCAATAATAAGGTCAAACTAATAAATAAGTTT
ACCAAACAATGTTGAAACATCTTAAAACAAATTCAGAAAGTGAGATGTTT
TCGGATGTTTCCTTAGATACCGGAGAATAGCAACTGAAGAATATAACATT
TCCATAGAAATCTTGAAAGCTGGTAGAAATCtgcaaatttcaaaatcaca
ttatttcacaatttcacaatgaAGCTAATAATTTTTCTTACCTGGCTTTA
AACAGCGATTTACTTCGCTGCTTAATCAGTAGGTGTTTGGAGAATGAAAT
CCAGATGCATTGATTCTTGTCTCCAAACTTTAAAAGAAGATTTTCGCAGT
AAAGAATTATGAAAGTGTTCGATTATTTGATACCACCAAACACTGATCAA
CACACCAAGAAAATATTCTTTGCAATATTTGCTTTGGGGTATTTTGTATC
ATTCTCTTTTTGGGCACAACAAGGGATTCTACCATATTTAACAAGGACCC
TTGGTGTTAATCCTACAACGTATGGTTTCTTGGAGTCGTCGTTTGCTTTA
TACCAATTGGTGACGTCGCCGATATTTGGTCTCCTTGCTGATCGCTGTGG
AATCAAAGTTTGGTATTTAGTATCAGAAGCAGCAGCTGTTTTCTGTTATG
GCTCCCTATCTATTGTGAATAGTATACCATTGTTGTTTTTGTCTCGTGTG
CCGGCACTTTTTATGCACAGTCTGCAAAGTCAATATATGGTAATCACCCA
TTTGACTGATGGAAAAGATCGTGCTGACGTTATTGGAAAGCTTGGGCTAT
TTCATGGTTTAGgAATGATAAGCGGTACGTTTTTTGGTGGTCTCGTTACC
AAAAACTTCAGCCCTAGAATCTCTCCTTTGATGTCCAGTATGGCAAACAT
AGCTTCAATTCTTGTCATTCTATTCTTCATACCAAATGACACAAAGTCCA
TTAAGCTTCAGCGCGATCAAGATAGATTAACCGGATTTCTTCTTGAGAAC
AATACTACCACGTCTGGAGATGATACTATTCAGGAAACTTCAAGTGATTC
TAAAGATCTACACCATACTGAAAAGTTGGGGGAATGTTCTCATATAGACG
TTGGTGTTGATGACAACAAGAGAAATTCTCCTGAACAGAGAGATAAATAT
GATGAAAATCTAAAAGATCGCTGTAGTACTAAAGTACCTCAAGAAGAGGC
TACCCACGATAAGAGCCGTCAAAATTTCGAAGAGTCTAGTGCTGAAAGAA
CAAATTCTTCCGACCCAAAGGATGAAATTTATTGCGAAAAACCCATAATA
CAAGAAACAGTAGCATCAAGTCCACGCGATTGTGAACCCAAACCTTCAGG
TTGTACTAATCTTCGCAGATTCTGGCATGTCGTATGCCTTCCCAGTATGG
CGATCGTAATCGGGCTGGAGGTTGCCGTATCTTTCGCGTCCAGCCTGATA
TTCAGTACATTTAGTATGGCAGTGATGGACTTCTACAGGCTAGACGCTTC
AGTTAATGGAATCTTGCTATCCTTTATTGGAGTAACCGTCATGTTTTGCC
AAGGCTTTTTGGTTGGTTTTCTAACAAAGCGTTATAAGGATTCTTACCTG
ATTAAAATTAGTCTATCACTCAATATCGTTGGTTTTCTATATCTTTCAGT
TGCGAGTAAGGTTTATATGCTCGTTTTGACCATAGTCCCGTTATTAATTG
GTGGAACATTGGCGCATATCATTTTCATGGTCATCATTACCAAGATAGCT
TCTGATGAGGACACTGGGTCAGCTCTTGGTATCATTTTTATGTTACGTGG
TTTAATGCGAGCTATAGCGCCCAGCGTTGGTGGGCTCATTTTTACGCATA
TTGGTTTTCCATTTATTGGAGTGACTGGTTATTTCATTGAATTGATTCTC
CTTCTCATCGTCATGTTCATATTAAAAGACAGCCAGTTAGATTTAGGATA
ATGGATGCGTTAGTATGTTGCGTGTGTTTTGATTCGTGTGTTTTGATTCG
TGTTTCTAAACCCAGGAAGGGCACTAGATTTGCGAAATGACGGGGAGTGc
cgcccgatttttgaaaatgctaATTTTAGGGTCAAAATCGAAgagaaaat
aaaacaacattttttgaattttaggtgCCTCAGCCGTTTTAAAGataaat
atttgatattttttgtaacccttagggAGACTGAAATTAGATAAATtaat
ttttacgacccttacagGGACTTTGAAGGTccaaaaggtacccttaaggg
cggcacatacccgcacccttcatttgcctaagtacccccctcccCGGGCT
GAACCACTAACACTTTTCTTCATGATAACTGTACACTAATTGACTTTAAT
GTGGAAACCATGTGTCATTTACTAATTTTCTTGACAGTTGTTCTTGTTAA
tgtttattgatattttttctttattat
Run BLAST on NCBI

transcript from alignment at sc0000222:382065..385492+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015915 ID=TCONS_00015915|Name=TCONS_00015915|organism=Clytia hemisphaerica|type=transcript|length=3428bp|location=Sequence derived from alignment at sc0000222:382065..385492+ (Clytia hemisphaerica)
ATTTCGCAGTCGGCTGTTTCAGGAGTTTTTCCTTTTTATCGATTCCCGAC
ATTTATTTTCGCaatctatttttaaaaactaggttttttttttttttaat
ctcatAATAATAACATTGTCAATAATAAGGTCAAACTAATAAATAAGTTT
ACCAAACAATGTTGAAACATCTTAAAACAAATTCAGAAAGTGAGATGTTT
TCGGATGTTTCCTTAGATACCGGAGAATAGCAACTGAAGAATATAACATT
TCCATAGAAATCTTGAAAGCTGGTAGAAATCtgcaaatttcaaaatcaca
ttatttcacaatttcacaatgaAGCTAATAATTTTTCTTACCTGGCTTTA
AACAGCGATTTACTTCGCTGCTTAATCAGTAGGTGTTTGGAGAATGAAAT
CCAGATGCATTGATTCTTGTCTCCAAACTTTAAAAGAAGATTTTCGCAGT
AAAGAATTATGAAAGTGTTCGATTATTTGATACCACCAAACACTGATCAA
CACACCAAGAAAATATTCTTTGCAATATTTGCTTTGGGGTATTTTGTATC
ATTCTCTTTTTGGGCACAACAAGGGATTCTACCATATTTAACAAGGACCC
TTGGTGTTAATCCTACAACGTATGGTTTCTTGGAGTCGTCGTTTGCTTTA
TACCAATTGGTGACGTCGCCGATATTTGGTCTCCTTGCTGATCGCTGTGG
AATCAAAGTTTGGTATTTAGTATCAGAAGCAGCAGCTGTTTTCTGTTATG
GCTCCCTATCTATTGTGAATAGTATACCATTGTTGTTTTTGTCTCGTGTG
CCGGCACTTTTTATGCACAGTCTGCAAAGTCAATATATGGTAATCACCCA
TTTGACTGATGGAAAAGATCGTGCTGACGTTATTGGAAAGCTTGGGCTAT
TTCATGGTTTAGGTGAGATGTTTTNTACCCATTTGACGGATGGAAAAGAT
CGTGCTGACGTTGTTGGAAAGCTTGGGCTATTCCATGGTTTAGGTGAGAT
GTTTTTCGTTTTGACCAATGGTTATTTTTAACCTACTCCCATAGAAATTA
AAGAGAACTACAGAGATGTGATGTGTTTAATTTAGCCTATTTATCCCTAA
TTTTAATAGGTTTAACTGTTAGCTGATTTAAAAAGACtgaatttaatttg
ttgttctaacaTTGTTTTTACAAGCTATATTTAAGTCAGCTTGAATGGCT
TTACTAAGGATTTcgactttttggacctaccttggaggtcctataaatta
acccatgttcgtccgtccgtccgtctgttaccagcttttctcaggattgg
ctcattagttttttctgatttttggcacaatgatgcaaaatggcaatgcc
caaaatgtgacggagcccgagaATGCCGGATATatcccggaaaaactgtt
tttttggcactttctcgagattttatcattagttttttctgattttttgc
tcaaagatgcgtattaacaatgcccaaaacatggttgagtccgatttttg
agaaaaaatatgccggaaatcgccgtttttctggattttcattggacttt
ttctttataattggttgttttttcattcaaaaacattattaatagcaatg
cccaccattaagcatggttcaattttcaataaaactgattttggtacagg
aactttctaaaaatcgccagaacagccgagaatcgccggatttcATTAAT
TTCTCGNACCAGTTATGTcctatgtgtttcattgtttcaatgttcattga
ttagtttgataaccaggtaggtccataaaagtatcacttgttcaatttgt
ttttatcttttaggAATGATAAGCGGTACGTTTTTTGGTGGTCTCGTTAC
CAAAAACTTCAGCCCTAGAATCTCTCCTTTGATGTCCAGTATGGCAAACA
TAGCTTCAATTCTTGTCATTCTATTCTTCATACCAAATGACACAAAGTCC
ATTAAGCTTCAGCGCGATCAAGATAGATTAACCGGATTTCTTCTTGAGAA
CAATACTACCACGTCTGGAGATGATACTATTCAGGAAACTTCAAGTGATT
CTAAAGATCTACACCATACTGAAAAGTTGGGGGAATGTTCTCATATAGAC
GTTGGTGTTGATGACAACAAGAGAAATTCTCCTGAACAGAGAGATAAATA
TGATGAAAATCTAAAAGATCGCTGTAGTACTAAAGTACCTCAAGAAGAGG
CTACCCACGATAAGAGCCGTCAAAATTTCGAAGAGTCTAGTGCTGAAAGA
ACAAATTCTTCCGACCCAAAGGATGAAATTTATTGCGAAAAACCCATAAT
ACAAGAAACAGTAGCATCAAGTCCACGCGATTGTGAACCCAAACCTTCAG
GTTGTACTAATCTTCGCAGATTCTGGCATGTCGTATGCCTTCCCAGTATG
GCGATCGTAATCGGGCTGGAGGTTGCCGTATCTTTCGCGTCCAGCCTGAT
ATTCAGTACATTTAGTATGGCAGTGATGGACTTCTACAGGCTAGACGCTT
CAGTTAATGGAATCTTGCTATCCTTTATTGGAGTAACCGTCATGTTTTGC
CAAGGCTTTTTGGTTGGTTTTCTAACAAAGCGTTATAAGGATTCTTACCT
GATTAAAATTAGTCTATCACTCAATATCGTTGGTTTTCTATATCTTTCAG
TTGCGAGTAAGGTTTATATGCTCGTTTTGACCATAGTCCCGTTATTAATT
GGTGGAACATTGGCGCATATCATTTTCATGGTCATCATTACCAAGATAGC
TTCTGATGAGGACACTGGGTCAGCTCTTGGTATCATTTTTATGTTACGTG
GTTTAATGCGAGCTATAGCGCCCAGCGTTGGTGGGCTCATTTTTACGCAT
ATTGGTTTTCCATTTATTGGAGTGACTGGTTATTTCATTGAATTGATTCT
CCTTCTCATCGTCATGTTCATATTAAAAGACAGCCAGTTAGATTTAGGAT
AATGGATGCGTTAGTATGTTGCGTGTGTTTTGATTCGTGTGTTTTGATTC
GTGTTTCTAAACCCAGGAAGGGCACTAGATTTGCGAAATGACGGGGAGTG
ccgcccgatttttgaaaatgctaATTTTAGGGTCAAAATCGAAgagaaaa
taaaacaacattttttgaattttaggtgCCTCAGCCGTTTTAAAGataaa
tatttgatattttttgtaacccttagggAGACTGAAATTAGATAAATtaa
tttttacgacccttacagGGACTTTGAAGGTccaaaaggtacccttaagg
gcggcacatacccgcacccttcatttgcctaagtacccccctcccCGGGC
TGAACCACTAACACTTTTCTTCATGATAACTGTACACTAATTGACTTTAA
TGTGGAAACCATGTGTCATTTACTAATTTTCTTGACAGTTGTTCTTGTTA
Atgtttattgatattttttctttattat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008889XLOC_008889Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015915-exon-sc0000222-1491911889:382065..382976TCONS_00015915-exon-sc0000222-1491911889:382065..382976Clytia hemisphaericaexon
TCONS_00015915-exon-sc0000222-1510915933:382065..382976TCONS_00015915-exon-sc0000222-1510915933:382065..382976Clytia hemisphaericaexon
TCONS_00015915-exon-sc0000222-1575043694:382065..382976TCONS_00015915-exon-sc0000222-1575043694:382065..382976Clytia hemisphaericaexon
TCONS_00015915-exon-sc0000222-1491911889:383878..385492TCONS_00015915-exon-sc0000222-1491911889:383878..385492Clytia hemisphaericaexon
TCONS_00015915-exon-sc0000222-1510915933:383878..385492TCONS_00015915-exon-sc0000222-1510915933:383878..385492Clytia hemisphaericaexon
TCONS_00015915-exon-sc0000222-1575043694:383878..385492TCONS_00015915-exon-sc0000222-1575043694:383878..385492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000222supercontigsc0000222:382065..385492 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.253727	0	0.0847709	5.54895e-06	0.358822	0	0	0	0	0	0	0	0	0	0	0	0.348457	0	0	2.17371e-10	0	1.03029e-08	1.27635	0.416295	0.287814	0	0.0223975	0.118914	0
Blast
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BLAST of TCONS_00015915 vs. Swiss-Prot (Human)
Match: S22AI (Solute carrier family 22 member 18 OS=Homo sapiens GN=SLC22A18 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.705e-17
Identity = 57/203 (28.08%), Postives = 109/203 (53.69%), Query Frame = 3 
Query: 1404 ETVASSPRDCEPKPSGCTNLRRFWHVVCLPSMAIVIGLEVAVSFASSLIFSTFSMAVMDFYRLDASVNGILLSFIGVTVMFCQGFLVGFLTKRYKDSYLIKISLSLNIVGFLYLSVASKVYMLVLTIVPLLIGGTLAHIIFMVIITKIASDEDTGSALGIIFMLRGLMRAIAPSVGGLIFTHIGFPFIGVTGYFIELILLLIV 2012
            +T A +P    P+ S   +L+    ++ LP +  +  ++VA +  + L    FS+  MDF++L+A+  G L+SF G+  M  QG ++G L+  + +  L++ S+ + IV  L ++  S V+   L +  L+      +++   ++ K  S  DTG+ LG+   ++ L+R + P+VGGL++   G P  G     I  ++LL++
Sbjct:  210 KTDAQAPLPGGPRAS-VFDLKAIASLLRLPDVPRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGLVIGQLSSHFSEEVLLRASVLVFIVVGLAMAWMSSVFHFCLLVPGLVFSLCTLNVVTDSMLIKAVSTSDTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLVL 411

HSP 2 Score: 82.0333 bits (201), Expect = 3.220e-16
Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = 3 
Query:  558 FWAQQGILPYLTRTLGVNPTTYGFLESSFALYQLVTSPIFGLLADRCGIKVWYLVSEAAAVFCYGSLSI-----VNSIPLLFLSRVPALFMHSLQSQYMVITHLTDGKDRADVIGKLGLFHGLGMISGTFFGGLVTKNF 959
             + Q  I+PYL+R LG++   +G+L+++F + QL+  P+FG  AD+ G +    +S  AA+  Y  L+      +  + LLF SR+P   MH+L +  MVIT L+  ++R   +G+LGL  G+G+I G+  GG +   +
Sbjct:   40 LFMQFSIVPYLSRKLGLDSIAFGYLQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLLFASRLPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAY 178
The following BLAST results are available for this feature:
BLAST of TCONS_00015915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22AI4.705e-1728.08Solute carrier family 22 member 18 OS=Homo sapiens... [more]
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