TCONS_00015916 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015916
Unique NameTCONS_00015916
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015916 ID=TCONS_00015916|Name=TCONS_00015916|organism=Clytia hemisphaerica|type=transcript|length=2584bp
GTTTTTCCTTTTTATCGATTCCCGACATTTATTTTCGCaatctattttta
aaaactaggttttttttttttttaatctcatAATAATAACATTGTCAATA
ATAAGGTCAAACTAATAAATAAGTTTACCAAACAATGTTGAAACATCTTA
AAACAAATTCAGAAAGTGAGATGTTTTCGGATGTTTCCTTAGATACCGGA
GAATAGCAACTGAAGAATATAACATTTCCATAGAAATCTTGAAAGCTGGT
AGAAATCtgcaaatttcaaaatcacattatttcacaatttcacaatgaAG
CTAATAATTTTTCTTACCTGGCTTTAAACAGCGATTTACTTCGCTGCTTA
ATCAGTAGGTGTTTGGAGAATGAAATCCAGATGCATTGATTCTTGTCTCC
AAACTTTAAAAGAAGATTTTCGCAGTAAAGAATTATGAAAGTGTTCGATT
ATTTGATACCACCAAACACTGATCAACACACCAAGAAAATATTCTTTGCA
ATATTTGCTTTGGGGTATTTTGTATCATTCTCTTTTTGGGCACAACAAGG
GATTCTACCATATTTAACAAGGACCCTTGGTGTTAATCCTACAACGTATG
GTTTCTTGGAGTCGTCGTTTGCTTTATACCAATTGGTGACGTCGCCGATA
TTTGGTCTCCTTGCTGATCGCTGTGGAATCAAAGTTTGGTATTTAGTATC
AGAAGCAGCAGCTGTTTTCTGTTATGGCTCCCTATCTATTGTGAATAGTA
TACCATTGTTGTTTTTGTCTCGTGTGCCGGCACTTTTTATGCACAGTCTG
CAAAGTCAATATATGGTAATCACCCATTTGACTGATGGAAAAGATCGTGC
TGACGTTATTGGAAAGCTTGGGCTATTTCATGGTTTAGGTGAGATGTTTT
NTACCCATTTGACGGATGGAAAAGATCGTGCTGACGTTGTTGGAAAGCTT
GGGCTATTCCATGGTTTAGgAATGATAAGCGGTACGTTTTTTGGTGGTCT
CGTTACCAAAAACTTCAGCCCTAGAATCTCTCCTTTGATGTCCAGTATGG
CAAACATAGCTTCAATTCTTGTCATTCTATTCTTCATACCAAATGACACA
AAGTCCATTAAGCTTCAGCGCGATCAAGATAGATTAACCGGATTTCTTCT
TGAGAACAATACTACCACGTCTGGAGATGATACTATTCAGGAAACTTCAA
GTGATTCTAAAGATCTACACCATACTGAAAAGTTGGGGGAATGTTCTCAT
ATAGACGTTGGTGTTGATGACAACAAGAGAAATTCTCCTGAACAGAGAGA
TAAATATGATGAAAATCTAAAAGATCGCTGTAGTACTAAAGTACCTCAAG
AAGAGGCTACCCACGATAAGAGCCGTCAAAATTTCGAAGAGTCTAGTGCT
GAAAGAACAAATTCTTCCGACCCAAAGGATGAAATTTATTGCGAAAAACC
CATAATACAAGAAACAGTAGCATCAAGTCCACGCGATTGTGAACCCAAAC
CTTCAGGTTGTACTAATCTTCGCAGATTCTGGCATGTCGTATGCCTTCCC
AGTATGGCGATCGTAATCGGGCTGGAGGTTGCCGTATCTTTCGCGTCCAG
CCTGATATTCAGTACATTTAGTATGGCAGTGATGGACTTCTACAGGCTAG
ACGCTTCAGTTAATGGAATCTTGCTATCCTTTATTGGAGTAACCGTCATG
TTTTGCCAAGGCTTTTTGGTTGGTTTTCTAACAAAGCGTTATAAGGATTC
TTACCTGATTAAAATTAGTCTATCACTCAATATCGTTGGTTTTCTATATC
TTTCAGTTGCGAGTAAGGTTTATATGCTCGTTTTGACCATAGTCCCGTTA
TTAATTGGTGGAACATTGGCGCATATCATTTTCATGGTCATCATTACCAA
GATAGCTTCTGATGAGGACACTGGGTCAGCTCTTGGTATCATTTTTATGT
TACGTGGTTTAATGCGAGCTATAGCGCCCAGCGTTGGTGGGCTCATTTTT
ACGCATATTGGTTTTCCATTTATTGGAGTGACTGGTTATTTCATTGAATT
GATTCTCCTTCTCATCGTCATGTTCATATTAAAAGACAGCCAGTTAGATT
TAGGATAATGGATGCGTTAGTATGTTGCGTGTGTTTTGATTCGTGTGTTT
TGATTCGTGTTTCTAAACCCAGGAAGGGCACTAGATTTGCGAAATGACGG
GGAGTGccgcccgatttttgaaaatgctaATTTTAGGGTCAAAATCGAAg
agaaaataaaacaacattttttgaattttaggtgCCTCAGCCGTTTTAAA
GataaatatttgatattttttgtaacccttagggAGACTGAAATTAGATA
AATtaatttttacgacccttacagGGACTTTGAAGGTccaaaaggtaccc
ttaagggcggcacatacccgcacccttcatttgcctaagtacccccctcc
cCGGGCTGAACCACTAACACTTTTCTTCATGATAACTGTACACTAATTGA
CTTTAATGTGGAAACCATGTGTCATTTACTAATTTTCTTGACAGTTGTTC
TTGTTAAtgtttattgatattttttctttattat
Run BLAST on NCBI

protein sequence of TCONS_00015916-protein

>TCONS_00015916-protein ID=TCONS_00015916-protein|Name=TCONS_00015916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
MKVFDYLIPPNTDQHTKKIFFAIFALGYFVSFSFWAQQGILPYLTRTLGV
NPTTYGFLESSFALYQLVTSPIFGLLADRCGIKVWYLVSEAAAVFCYGSL
SIVNSIPLLFLSRVPALFMHSLQSQYMVITHLTDGKDRADVIGKLGLFHG
LGEMFXTHLTDGKDRADVVGKLGLFHGLGMISGTFFGGLVTKNFSPRISP
LMSSMANIASILVILFFIPNDTKSIKLQRDQDRLTGFLLENNTTTSGDDT
IQETSSDSKDLHHTEKLGECSHIDVGVDDNKRNSPEQRDKYDENLKDRCS
TKVPQEEATHDKSRQNFEESSAERTNSSDPKDEIYCEKPIIQETVASSPR
DCEPKPSGCTNLRRFWHVVCLPSMAIVIGLEVAVSFASSLIFSTFSMAVM
DFYRLDASVNGILLSFIGVTVMFCQGFLVGFLTKRYKDSYLIKISLSLNI
VGFLYLSVASKVYMLVLTIVPLLIGGTLAHIIFMVIITKIASDEDTGSAL
GIIFMLRGLMRAIAPSVGGLIFTHIGFPFIGVTGYFIELILLLIVMFILK
DSQLDLG
Run BLAST on NCBI

transcript from alignment at sc0000222:382089..385492+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015916 ID=TCONS_00015916|Name=TCONS_00015916|organism=Clytia hemisphaerica|type=transcript|length=3404bp|location=Sequence derived from alignment at sc0000222:382089..385492+ (Clytia hemisphaerica)
GTTTTTCCTTTTTATCGATTCCCGACATTTATTTTCGCaatctattttta aaaactaggttttttttttttttaatctcatAATAATAACATTGTCAATA ATAAGGTCAAACTAATAAATAAGTTTACCAAACAATGTTGAAACATCTTA AAACAAATTCAGAAAGTGAGATGTTTTCGGATGTTTCCTTAGATACCGGA GAATAGCAACTGAAGAATATAACATTTCCATAGAAATCTTGAAAGCTGGT AGAAATCtgcaaatttcaaaatcacattatttcacaatttcacaatgaAG CTAATAATTTTTCTTACCTGGCTTTAAACAGCGATTTACTTCGCTGCTTA ATCAGTAGGTGTTTGGAGAATGAAATCCAGATGCATTGATTCTTGTCTCC AAACTTTAAAAGAAGATTTTCGCAGTAAAGAATTATGAAAGTGTTCGATT ATTTGATACCACCAAACACTGATCAACACACCAAGAAAATATTCTTTGCA ATATTTGCTTTGGGGTATTTTGTATCATTCTCTTTTTGGGCACAACAAGG GATTCTACCATATTTAACAAGGACCCTTGGTGTTAATCCTACAACGTATG GTTTCTTGGAGTCGTCGTTTGCTTTATACCAATTGGTGACGTCGCCGATA TTTGGTCTCCTTGCTGATCGCTGTGGAATCAAAGTTTGGTATTTAGTATC AGAAGCAGCAGCTGTTTTCTGTTATGGCTCCCTATCTATTGTGAATAGTA TACCATTGTTGTTTTTGTCTCGTGTGCCGGCACTTTTTATGCACAGTCTG CAAAGTCAATATATGGTAATCACCCATTTGACTGATGGAAAAGATCGTGC TGACGTTATTGGAAAGCTTGGGCTATTTCATGGTTTAGGTGAGATGTTTT NTACCCATTTGACGGATGGAAAAGATCGTGCTGACGTTGTTGGAAAGCTT GGGCTATTCCATGGTTTAGGTGAGATGTTTTTCGTTTTGACCAATGGTTA TTTTTAACCTACTCCCATAGAAATTAAAGAGAACTACAGAGATGTGATGT GTTTAATTTAGCCTATTTATCCCTAATTTTAATAGGTTTAACTGTTAGCT GATTTAAAAAGACtgaatttaatttgttgttctaacaTTGTTTTTACAAG CTATATTTAAGTCAGCTTGAATGGCTTTACTAAGGATTTcgactttttgg acctaccttggaggtcctataaattaacccatgttcgtccgtccgtccgt ctgttaccagcttttctcaggattggctcattagttttttctgatttttg gcacaatgatgcaaaatggcaatgcccaaaatgtgacggagcccgagaAT GCCGGATATatcccggaaaaactgtttttttggcactttctcgagatttt atcattagttttttctgattttttgctcaaagatgcgtattaacaatgcc caaaacatggttgagtccgatttttgagaaaaaatatgccggaaatcgcc gtttttctggattttcattggactttttctttataattggttgttttttc attcaaaaacattattaatagcaatgcccaccattaagcatggttcaatt ttcaataaaactgattttggtacaggaactttctaaaaatcgccagaaca gccgagaatcgccggatttcATTAATTTCTCGNACCAGTTATGTcctatg tgtttcattgtttcaatgttcattgattagtttgataaccaggtaggtcc ataaaagtatcacttgttcaatttgtttttatcttttaggAATGATAAGC GGTACGTTTTTTGGTGGTCTCGTTACCAAAAACTTCAGCCCTAGAATCTC TCCTTTGATGTCCAGTATGGCAAACATAGCTTCAATTCTTGTCATTCTAT TCTTCATACCAAATGACACAAAGTCCATTAAGCTTCAGCGCGATCAAGAT AGATTAACCGGATTTCTTCTTGAGAACAATACTACCACGTCTGGAGATGA TACTATTCAGGAAACTTCAAGTGATTCTAAAGATCTACACCATACTGAAA AGTTGGGGGAATGTTCTCATATAGACGTTGGTGTTGATGACAACAAGAGA AATTCTCCTGAACAGAGAGATAAATATGATGAAAATCTAAAAGATCGCTG TAGTACTAAAGTACCTCAAGAAGAGGCTACCCACGATAAGAGCCGTCAAA ATTTCGAAGAGTCTAGTGCTGAAAGAACAAATTCTTCCGACCCAAAGGAT GAAATTTATTGCGAAAAACCCATAATACAAGAAACAGTAGCATCAAGTCC ACGCGATTGTGAACCCAAACCTTCAGGTTGTACTAATCTTCGCAGATTCT GGCATGTCGTATGCCTTCCCAGTATGGCGATCGTAATCGGGCTGGAGGTT GCCGTATCTTTCGCGTCCAGCCTGATATTCAGTACATTTAGTATGGCAGT GATGGACTTCTACAGGCTAGACGCTTCAGTTAATGGAATCTTGCTATCCT TTATTGGAGTAACCGTCATGTTTTGCCAAGGCTTTTTGGTTGGTTTTCTA ACAAAGCGTTATAAGGATTCTTACCTGATTAAAATTAGTCTATCACTCAA TATCGTTGGTTTTCTATATCTTTCAGTTGCGAGTAAGGTTTATATGCTCG TTTTGACCATAGTCCCGTTATTAATTGGTGGAACATTGGCGCATATCATT TTCATGGTCATCATTACCAAGATAGCTTCTGATGAGGACACTGGGTCAGC TCTTGGTATCATTTTTATGTTACGTGGTTTAATGCGAGCTATAGCGCCCA GCGTTGGTGGGCTCATTTTTACGCATATTGGTTTTCCATTTATTGGAGTG ACTGGTTATTTCATTGAATTGATTCTCCTTCTCATCGTCATGTTCATATT AAAAGACAGCCAGTTAGATTTAGGATAATGGATGCGTTAGTATGTTGCGT GTGTTTTGATTCGTGTGTTTTGATTCGTGTTTCTAAACCCAGGAAGGGCA CTAGATTTGCGAAATGACGGGGAGTGccgcccgatttttgaaaatgctaA TTTTAGGGTCAAAATCGAAgagaaaataaaacaacattttttgaatttta ggtgCCTCAGCCGTTTTAAAGataaatatttgatattttttgtaaccctt agggAGACTGAAATTAGATAAATtaatttttacgacccttacagGGACTT TGAAGGTccaaaaggtacccttaagggcggcacatacccgcacccttcat ttgcctaagtacccccctcccCGGGCTGAACCACTAACACTTTTCTTCAT GATAACTGTACACTAATTGACTTTAATGTGGAAACCATGTGTCATTTACT AATTTTCTTGACAGTTGTTCTTGTTAAtgtttattgatattttttcttta ttat

Coding sequence (CDS) from alignment at sc0000222:382089..385492+

>TCONS_00015916 ID=TCONS_00015916|Name=TCONS_00015916|organism=Clytia hemisphaerica|type=CDS|length=3348bp|location=Sequence derived from alignment at sc0000222:382089..385492+ (Clytia hemisphaerica)
ATGAAAGTGTTCGATTATTTGATACCACCAAACACTGATCAACACACCAA
GAAAATATTCTTTGCAATATTTGCTTTGGGGTATTTTGTATCATTCTCTT
TTTGGGCACAACAAGGGATTCTACCATATTTAACAAGGACCCTTGGTGTT
AATCCTACAACGTATGGTTTCTTGGAGTCGTCGTTTGCTTTATACCAATT
GGTGACGTCGCCGATATTTGGTCTCCTTGCTGATCGCTGTGGAATCAAAG
TTTGGTATTTAGTATCAGAAGCAGCAGCTGTTTTCTGTTATGGCTCCCTA
TCTATTGTGAATAGTATACCATTGTTGTTTTTGTCTCGTGTGCCGGCACT
TTTTATGCACAGTCTGCAAAGTCAATATATGGTAATCACCCATTTGACTG
ATGGAAAAGATCGTGCTGACGTTATTGGAAAGCTTGGGCTATTTCATGGT
TTAGGTGAGATGTTTTNTACCCATTTGACGGATGGAAAAGATCGTGCTGA
CGTTGTTGGAAAGCTTGGGCTATTCCATGGTTTAGgAATGATAAGCGGTA
CGTTTTTTGGTGGTCTCGTTACCAAAAACTTCAGCCCTAGAATCTCTCCT
TTGATGTCCAGTATGGCAAACATAGCTTCAATTCTTGTCATTCTATTCTT
CATACCAAATGACACAAAGTCCATTAAGCTTCAGCGCGATCAAGATAGAT
TAACCGGATTTCTTCTTGAGAACAATACTACCACGTCTGGAGATGATACT
ATTCAGGAAACTTCAAGTGATTCTAAAGATCTACACCATACTGAAAAGTT
GGGGGAATGTTCTCATATAGACGTTGGTGTTGATGACAACAAGAGAAATT
CTCCTGAACAGAGAGATAAATATGATGAAAATCTAAAAGATCGCTGTAGT
ACTAAAGTACCTCAAGAAGAGGCTACCCACGATAAGAGCCGTCAAAATTT
CGAAGAGTCTAGTGCTGAAAGAACAAATTCTTCCGACCCAAAGGATGAAA
TTTATTGCGAAAAACCCATAATACAAGAAACAGTAGCATCAAGTCCACGC
GATTGTGAACCCAAACCTTCAGGTTGTACTAATCTTCGCAGATTCTGGCA
TGTCGTATGCCTTCCCAGTATGGCGATCGTAATCGGGCTGGAGGTTGCCG
TATCTTTCGCGTCCAGCCTGATATTCAGTACATTTAGTATGGCAGTGATG
GACTTCTACAGGCTAGACGCTTCAGTTAATGGAATCTTGCTATCCTTTAT
TGGAGTAACCGTCATGTTTTGCCAAGGCTTTTTGGTTGGTTTTCTAACAA
AGCGTTATAAGGATTCTTACCTGATTAAAATTAGTCTATCACTCAATATC
GTTGGTTTTCTATATCTTTCAGTTGCGAGTAAGGTTTATATGCTCGTTTT
GACCATAGTCCCGTTATTAATTGGTGGAACATTGGCGCATATCATTTTCA
TGGTCATCATTACCAAGATAGCTTCTGATGAGGACACTGGGTCAGCTCTT
GGTATCATTTTTATGTTACGTGGTTTAATGCGAGCTATAGCGCCCAGCGT
TGGTGGGCTCATTTTTACGCATATTGGTTTTCCATTTATTGGAGTGACTG
GTTATTTCATTGAATTGATTCTCCTTCTCATCGTCATGTTCATATTAAAA
GACAGCCAGTTAGATTTAGGATAAATGAAAGTGTTCGATTATTTGATACC
ACCAAACACTGATCAACACACCAAGAAAATATTCTTTGCAATATTTGCTT
TGGGGTATTTTGTATCATTCTCTTTTTGGGCACAACAAGGGATTCTACCA
TATTTAACAAGGACCCTTGGTGTTAATCCTACAACGTATGGTTTCTTGGA
GTCGTCGTTTGCTTTATACCAATTGGTGACGTCGCCGATATTTGGTCTCC
TTGCTGATCGCTGTGGAATCAAAGTTTGGTATTTAGTATCAGAAGCAGCA
GCTGTTTTCTGTTATGGCTCCCTATCTATTGTGAATAGTATACCATTGTT
GTTTTTGTCTCGTGTGCCGGCACTTTTTATGCACAGTCTGCAAAGTCAAT
ATATGGTAATCACCCATTTGACTGATGGAAAAGATCGTGCTGACGTTATT
GGAAAGCTTGGGCTATTTCATGGTTTAGGTGAGATGTTTTNTACCCATTT
GACGGATGGAAAAGATCGTGCTGACGTTGTTGGAAAGCTTGGGCTATTCC
ATGGTTTAGgAATGATAAGCGGTACGTTTTTTGGTGGTCTCGTTACCAAA
AACTTCAGCCCTAGAATCTCTCCTTTGATGTCCAGTATGGCAAACATAGC
TTCAATTCTTGTCATTCTATTCTTCATACCAAATGACACAAAGTCCATTA
AGCTTCAGCGCGATCAAGATAGATTAACCGGATTTCTTCTTGAGAACAAT
ACTACCACGTCTGGAGATGATACTATTCAGGAAACTTCAAGTGATTCTAA
AGATCTACACCATACTGAAAAGTTGGGGGAATGTTCTCATATAGACGTTG
GTGTTGATGACAACAAGAGAAATTCTCCTGAACAGAGAGATAAATATGAT
GAAAATCTAAAAGATCGCTGTAGTACTAAAGTACCTCAAGAAGAGGCTAC
CCACGATAAGAGCCGTCAAAATTTCGAAGAGTCTAGTGCTGAAAGAACAA
ATTCTTCCGACCCAAAGGATGAAATTTATTGCGAAAAACCCATAATACAA
GAAACAGTAGCATCAAGTCCACGCGATTGTGAACCCAAACCTTCAGGTTG
TACTAATCTTCGCAGATTCTGGCATGTCGTATGCCTTCCCAGTATGGCGA
TCGTAATCGGGCTGGAGGTTGCCGTATCTTTCGCGTCCAGCCTGATATTC
AGTACATTTAGTATGGCAGTGATGGACTTCTACAGGCTAGACGCTTCAGT
TAATGGAATCTTGCTATCCTTTATTGGAGTAACCGTCATGTTTTGCCAAG
GCTTTTTGGTTGGTTTTCTAACAAAGCGTTATAAGGATTCTTACCTGATT
AAAATTAGTCTATCACTCAATATCGTTGGTTTTCTATATCTTTCAGTTGC
GAGTAAGGTTTATATGCTCGTTTTGACCATAGTCCCGTTATTAATTGGTG
GAACATTGGCGCATATCATTTTCATGGTCATCATTACCAAGATAGCTTCT
GATGAGGACACTGGGTCAGCTCTTGGTATCATTTTTATGTTACGTGGTTT
AATGCGAGCTATAGCGCCCAGCGTTGGTGGGCTCATTTTTACGCATATTG
GTTTTCCATTTATTGGAGTGACTGGTTATTTCATTGAATTGATTCTCCTT
CTCATCGTCATGTTCATATTAAAAGACAGCCAGTTAGATTTAGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008889XLOC_008889Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015916-proteinTCONS_00015916-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015916-exon-sc0000222-1491911889:382089..383057TCONS_00015916-exon-sc0000222-1491911889:382089..383057Clytia hemisphaericaexon
TCONS_00015916-exon-sc0000222-1510915933:382089..383057TCONS_00015916-exon-sc0000222-1510915933:382089..383057Clytia hemisphaericaexon
TCONS_00015916-exon-sc0000222-1575043694:382089..383057TCONS_00015916-exon-sc0000222-1575043694:382089..383057Clytia hemisphaericaexon
TCONS_00015916-exon-sc0000222-1491911889:383878..385492TCONS_00015916-exon-sc0000222-1491911889:383878..385492Clytia hemisphaericaexon
TCONS_00015916-exon-sc0000222-1510915933:383878..385492TCONS_00015916-exon-sc0000222-1510915933:383878..385492Clytia hemisphaericaexon
TCONS_00015916-exon-sc0000222-1575043694:383878..385492TCONS_00015916-exon-sc0000222-1575043694:383878..385492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000222supercontigsc0000222:382089..385492 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.313698 0 0.202963 0 0.624481 0 2.05495 3.11048 0.944097 0.530136 1.18047 1.26348 1.26172 1.29999 1.22993 3.06764 3.09504 2.6828 0.412865 0.4985 2.22421 1.92321 0.942019 0 0.66826 1.16478 0.368693 0 0 0.118247
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
BLAST of TCONS_00015916 vs. Swiss-Prot (Human)
Match: S22AI (Solute carrier family 22 member 18 OS=Homo sapiens GN=SLC22A18 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.908e-17
Identity = 57/203 (28.08%), Postives = 109/203 (53.69%), Query Frame = 3
Query: 1461 ETVASSPRDCEPKPSGCTNLRRFWHVVCLPSMAIVIGLEVAVSFASSLIFSTFSMAVMDFYRLDASVNGILLSFIGVTVMFCQGFLVGFLTKRYKDSYLIKISLSLNIVGFLYLSVASKVYMLVLTIVPLLIGGTLAHIIFMVIITKIASDEDTGSALGIIFMLRGLMRAIAPSVGGLIFTHIGFPFIGVTGYFIELILLLIV 2069
            +T A +P    P+ S   +L+    ++ LP +  +  ++VA +  + L    FS+  MDF++L+A+  G L+SF G+  M  QG ++G L+  + +  L++ S+ + IV  L ++  S V+   L +  L+      +++   ++ K  S  DTG+ LG+   ++ L+R + P+VGGL++   G P  G     I  ++LL++
Sbjct:  210 KTDAQAPLPGGPRAS-VFDLKAIASLLRLPDVPRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGLVIGQLSSHFSEEVLLRASVLVFIVVGLAMAWMSSVFHFCLLVPGLVFSLCTLNVVTDSMLIKAVSTSDTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLVL 411          
The following BLAST results are available for this feature:
BLAST of TCONS_00015916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22AI4.908e-1728.08Solute carrier family 22 member 18 OS=Homo sapiens... [more]
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