TCONS_00015923 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015923
Unique NameTCONS_00015923
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1196

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015923 ID=TCONS_00015923|Name=TCONS_00015923|organism=Clytia hemisphaerica|type=transcript|length=1196bp
aacaaacacaacaAAATGAGTAATGGTCAAGTGATTACTGAACTTTTTGA
ACAAATTGTTCACTCTGAAGAAagaatcaaacaaagatttgaagaTCTGA
AGAAAGttaatCAAGAAATCCAAAACCACCAAGCTAAAATCAAATCCATC
AAATATCAGAAAGATTCATTGCTTGGTAAATTGAACAACATGCGCCACAA
ATTGCTGGAAGAACAGTTAGAGGAGAAATGGATGAACATTCGAAAAGATA
TTTTATTCACACAGAAAGAGAAATGTTTTAATGAGAAACACGAACTGGTA
TTTGAGCTAtgcAAATTTCTTGGAAGCATGTGATTGTTTCCTTGAAGACT
TTGACGTTTTAAGCGGCAACGGAATCATTGAGAAGAAGCAGAGCATCTTA
CAACAGAGGCTCTCTAATTTGAAAATCGAAGAAGACTCTCTGAAGAaagA
CATTTTCGAGTGTGAAAAActggaagaaaaaagaaatgagCTCAAGGATG
ATCATGAAAAGCTCAAACAAGAAATTGAAGAACTGAtgaaaaacaaagat
gaatgcaaaaaaaaattgttgagcGCTCAGAGTGATTGTAAAAAGATGAA
AGATGTGAAGGAAGGTTTTCTCCGTAAGTTACAAAACAATACGAATCACA
GAAGTCTACAAAACGAATTGGACAGAAGCAAGAAAAAGCTACAATATCTC
ACCGATGAGAAACATAACCTCGAGCGACAACTAGCTGATCAGCAACGTAA
ACGGAACATTAACAATGTGGAAACCAGACAGTCAAACCCATGGTACATTT
CAAGGCCAAATACAACACCTGGTTTCTCTCATCTAAATCACACGACGGTT
TCTTCAGCATCATCGTCATCTTCGACGCGTCGTTTTCAATATTCCGTCAA
CAAAGGGGCGTCACGCAAAAGACCAGCTAATGATGACGTCTTTTCTGATA
TGACGTCAATGTCACGTGATAGCTCTCAAAATTCGCAGTACTCGCAAAAC
AACAGAAACGATAGAAACAGTTTTGACTTTGATATTGATttAAGTGATGA
TGATATGCTGATGACATCATatttgttacaagaaaaatgatCACTTGGAT
TCTGGTGTGTGCTAAAACCAGAAACAAGTATAGACCAGGCGATGACTCAC
GGTCGCGCAACCTTTCGATAGAAAAACCCCCATATGGTTTTTTGTA
Run BLAST on NCBI

transcript from alignment at sc0000222:85703..90269-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015923 ID=TCONS_00015923|Name=TCONS_00015923|organism=Clytia hemisphaerica|type=transcript|length=4567bp|location=Sequence derived from alignment at sc0000222:85703..90269- (Clytia hemisphaerica)
AACAAACACAACAAAATGAGTAATGGTCAAGTGATTACTGAACTTTTTGA
ACAAATTGTTCACTCTGAAGAAAGAATCAAACAAAGATTTGAAGATCTGA
AGAAAGGTATATGTTCTCTTTTGTTTTATTCGCATTTCTAGTTTAGATGA
CTGTCAACTTTCTTCCCTGCCTATTCTAATTGCCAGAGTAGGCAAAAAGT
TGGCAGTTGAAGTCGTTCTAAAAAAATTGAAAGAAGTCAAAACTCACTGC
TTAAGTTCCCCTTAAAGACACCCTCTAAATTTAGAAGTCAGAAACTATGA
CTTTCATCATCAACGACCTGTATATTTTTTTATTTTAGTTAATCAAGAAA
TCCAAAACCACCAAGCTAAAATCAAATCCATCAAATATCAGAAAGATTCA
TTGCTTGGTAAATTGAACAACATGCGCCACAAATTGCTGGAAGAACAGTT
AGAGGAGAAATGGATGAACATTCGAAAAGATATTTTATTCACACAGAAAG
AGAAATGTTTTAATGAGAAACACGAACTGGTATTTGAGCTAGTAAGTTAA
GTTTGGTTTAGGGAGACGTTTGGCATTTTTCTTTGCTATATTATCTTATA
GTTCGTTTTTCTCAATCACGGAAGGATCAAGTTTTGCGGCTCAAGCTGAA
AATAAGCACATTCTCTGTCAAAAATAAAATATGATTTTCCAAATTAAACT
CTTTCATTGAATTGAACAGTTATTAACCAAAGTTTGAGCTGAAAATCGAC
CATGAAAGTGCTGTGCTTACAGTTTTGCAAGCCTGGGATTCCCATTTGAA
AGACACTTGGCCCGTACTGCAACATTATCTGCCTTGTAGGAAATGTTTAA
GCTCTTCACAGTCAACTCTCTGTTATTCGAATCTTTCTGTAATTCGAATT
AAAATATTGGTGCCCTCAGCTGGAAATGGTTTGAAATAATGTCTCAATTT
GAATCTTTCCCTGATTCGAATAAAATTTTTGGTCCCTTGAAGATCGAATT
AGAATGAATCAACTGTATCTCACTATTTACAAGAAATCTCAATTCATAAT
TCATTCTCTCGTCTAGGAAGAAATACAGGACAGGCAAAAGACAGACAGGT
TTGTCATTTCGCTCAGTAGTTATTCATGAAAGTATGAAATTATAGTTGAT
CGAAGGTTCCATTATTTTCATAGCTCTAGAAACTATCAGAAAAAGAGATT
TTTGATTGATTGATCGATCGATCGATTGATTGATTGATTGATTGATTGAT
TGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTG
ATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGAT
TGATTGATTGATTGATTGACTGATTGATTGATTGATTGATTGATTGATTG
ATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGACTGATTGGT
AGTTCGACTTATTGATAGTTCGATACATTGATAGTTTGATATATTGATAG
TTTGATTGATCAATACTTCGATTCATTGATTCTTTGATTCATCGATTCAT
TGATTCATTAATGGATAGTAGACTTATTGTTTGATTTAGTGATTATTCGA
TCAGGTTAAATTAATGTGTCGATTGATTGTTCGATTATTTGATTTTTATT
TTAGTGCAAATTTCTTGGAAGCATGTGATTGTTTCCTTGAAGACTTTGAC
GTTTTAAGCGGCAACGGAATCATTGAGAAGAAGCAGAGCATCTTACAACA
GAGGCTCTCTAATTTGAAAATCGAAGAAGACTCTCTGAAGAAAGGTTAAA
TTTTTTAATTCACTAAAGTCTGTTTGGATACTTTTGAGGGATCTTGGAGT
AAGTTCAGCACTAAGGTTTGGTTGCTTTGAGACGATAAAGATAAAAATTC
CTTAACATGAAAGTCACATCGTAGCACCTTAATTTCATTATTTTCGCGTG
GTTTAATTTTGCGAATCAGCCAAAAAGTCGAAAATGGTCCTGACAACGTC
AGTTTTTCTCACAAACAGCAAATTACAGGGACCTGAACTTCAGTCTCGCA
TGGACTTGGTTTTGCGAGTCAACAATTTCATGCGATTTCACGAGTTTTAT
TTTCGTGAATAAAGCAAGAATTCGAGAAACTGTGAAAATTCATCCGAGTT
ATTAAGTAGTATTTTTAAGATGTATTTGAAAAACTACTTATTTTTACCCT
CTTTTCTTTAATACTAGACATTTTCGAGTGTGAAAAACTGGAAGAAAAAA
GAAATGAGCTCAAGGATGATCATGAAAAGCTCAAACAAGAAATTGAAGAA
CTGATGAAAAACAAAGATGGTATAAACATAAATTGCATTCAATATTGTAG
TTTTTCATTATTTGGAATTTTCATAGGCCATTTCACAGTCGCAAAGCGTA
ATGGGTAATCAGGACCACTGCGCGATAATGACGACTTACTATTGGTCCAA
AGTTTTGAAAAATATTTTTGCGTCTAGCCAACGGGAAGCCGTTATGGAGG
CACAACCTGTCCTGATTACCCATGATCTATTTTGACTGTGTTATGGCCTA
TACTTCACGTAGGTTTACTAATGCTACCTCAGACTGGGCCTAAATCGGCT
AGACTTGAGGTCGAGAAATTAGCTCTATATTGACCGAATATGTGCCTTAA
AAATAGAAACTTAATGTAAAACAGTGTCAAAGAGTTAAATATTTATCTCT
CTTCCAGCGTCCCCCCCCCCCCCCTTTTCCGGGGGAGCACACCCTTTTTC
ATCTTTTTTTTTTTTTTTAAAATGAAAAAAAAAACCGGGCCAAAGAATAA
AATTTTTCCTCTCCTTCCGGCTCCCCCCCCCCCCCCGGGTTTGCCGTGGA
CACAGTCCTTTTGACCTCTATATCTTTATTCAGAATGCAAAAAAAAATTG
TTGAGCGCTCAGAGTGATTGTAAAAAGATGAAAGATGTGAAGGAAGGTTT
TCTCCGTAAGTTACAAAACAATACGAATCACAGAAGGTAAGAACAGTATA
CTTTTTCATATGGCGCCATTACGTTTTGGTTGATGCTTTTAATGCGAATT
TCAAGCTTAATTGTTCTTAAAATATTCTTAACATTCATGATATGCCCAAT
TTTTACATCACTTACAACCGATCAGCTATTGGGTCCGTGATGTAATATCA
GAAGACATTGCAATGGTGCATATCATGAATAGCTACTTTGTTTATTGACT
TAAAAGGGGCAGAATTAAGAACGACATTACGGTATTTCTAAAACTGAGAC
TTGGTTGTTAGCTTTTGGTCAAAATTGATTTGACTAATTTTTGCGGCCGA
AAAAAAAAATCGAAACAAATTGTATTTCGGTAATTAATTTTCGTGGTAAT
CAGTTTTCTCGGTTGGGGCTAAATTTTATTAATATTTAAGTGATGTCAGA
AAGGCTTTTGTTAAAATTTGACTCGATCATCTTCTGAAAAAGTAAAATTG
TGAAATTAACTTTTGCAGTTTCGTTAAATAAACAATTTAAACCGGGATGT
TTTCGTAGATAACATTACGTCATGAATATCATGAATTGACAGATCTTTCC
AGAGACGTTACTAATTCATTGAATCCTTTTTTTGTCTTTTCAAAGTCTAC
AAAACGAATTGGACAGAAGCAAGAAAAAGCTACAATATCTCACCGATGAG
AAACATAACCTCGAGCGACAACTAGCTGATCAGCAACGTAAACGGAACAT
TAACAATGTGGAAACCAGACAGTCAAACCCATGGTACATTTCAAGGCCAA
ATACAACACCTGGTTTCTCTCATCTAAATCACACGACGGTTTCTTCAGCA
TCATCGTCATCTTCGACGCGTCGTTTTCAATATTCCGTCAACAAAGGGGC
GTCACGCAAAAGACCAGCTAATGATGACGTCTTTTCTGATATGACGTCAA
TGTCACGTGATAGCTCTCAAAATTCGCAGTACTCGCAAAACAACAGAAAC
GATAGAAACAGTTTTGACTTTGATATTGATGTAAGTTTGTTCTGATTACG
TTGTCTAGCAACGACTTTCATTTTTACGAATGTTGTAATTTTAAGTAAAG
TGAAACCCTAAGTCACGATCGTGTCGTTATTTGTTTGAGCTAATACAAAG
ATTTAGTTACTTTTTTTATTCTGGCAGTTTCATGCCACTTTGGTGGCAAT
CTTCACCTGTCATAACTGGAATGACTGTTGGCCGATCTTTCTGTAAAGGT
TTTCCATGTTTTTGCAAGTTACGTAATTTTCGCCATTATGGAAGCAATCG
TTCAAATCTGTGCGGTCCTTTACGCAAGTCGAACGTTTGCTTCCAGAATA
ACAAAAATTAAAACATGAAAAAATTTTTATAGTTATTCAAAGTTTTCAAC
TAATGCTTTTGGAGAAACAACTTTCAAACTATGATTGCATTTTGTTTTAT
ATATTTTCAGTTAAGTGATGATGATATGCTGATGACATCATATTTGTTAC
AAGAAAAATGATCACTTGGATTCTGGTGTGTGCTAAAACCAGAAACAAGT
ATAGACCAGGCGATGACTCACGGTCGCGCAACCTTTCGATAGAAAAACCC
CCATATGGTTTTTTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008892XLOC_008892Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015923-exon-sc0000222-1575043694:90164..90269TCONS_00015923-exon-sc0000222-1575043694:90164..90269Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1575043694:89729..89931TCONS_00015923-exon-sc0000222-1575043694:89729..89931Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1575043694:88476..88615TCONS_00015923-exon-sc0000222-1575043694:88476..88615Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1575043694:87951..88052TCONS_00015923-exon-sc0000222-1575043694:87951..88052Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1575043694:87284..87386TCONS_00015923-exon-sc0000222-1575043694:87284..87386Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1575043694:86290..86674TCONS_00015923-exon-sc0000222-1575043694:86290..86674Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1575043694:85703..85859TCONS_00015923-exon-sc0000222-1575043694:85703..85859Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1510915933:90164..90269TCONS_00015923-exon-sc0000222-1510915933:90164..90269Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1510915933:89729..89931TCONS_00015923-exon-sc0000222-1510915933:89729..89931Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1510915933:88476..88615TCONS_00015923-exon-sc0000222-1510915933:88476..88615Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1510915933:87951..88052TCONS_00015923-exon-sc0000222-1510915933:87951..88052Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1510915933:87284..87386TCONS_00015923-exon-sc0000222-1510915933:87284..87386Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1510915933:86290..86674TCONS_00015923-exon-sc0000222-1510915933:86290..86674Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1510915933:85703..85859TCONS_00015923-exon-sc0000222-1510915933:85703..85859Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1491911889:90164..90269TCONS_00015923-exon-sc0000222-1491911889:90164..90269Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1491911889:89729..89931TCONS_00015923-exon-sc0000222-1491911889:89729..89931Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1491911889:88476..88615TCONS_00015923-exon-sc0000222-1491911889:88476..88615Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1491911889:87951..88052TCONS_00015923-exon-sc0000222-1491911889:87951..88052Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1491911889:87284..87386TCONS_00015923-exon-sc0000222-1491911889:87284..87386Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1491911889:86290..86674TCONS_00015923-exon-sc0000222-1491911889:86290..86674Clytia hemisphaericaexon
TCONS_00015923-exon-sc0000222-1491911889:85703..85859TCONS_00015923-exon-sc0000222-1491911889:85703..85859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000222supercontigsc0000222:85703..90269 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.46005	5.12006	1.47884	0	0	0.258857	0.385135	0	0.186044	1.14369	0.619091	0	0.476979	0.322745	0.00959221	0.507772	0	1.01993	0.343893	0	0	0	3.53125	2.72949	0.516338	0	1.69031	0.616869	0.0368807	2.4155
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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