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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015934 ID=TCONS_00015934|Name=TCONS_00015934|organism=Clytia hemisphaerica|type=transcript|length=4457bpRun BLAST on NCBI protein sequence of TCONS_00015934-protein >TCONS_00015934-protein ID=TCONS_00015934-protein|Name=TCONS_00015934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1216bp MYIKQVIIQGFRSYRDQTVIEPFSPKHNVVVGRNGSGKSNFFLAIQFVLSRun BLAST on NCBI transcript from alignment at sc0000222:206973..239202- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015934 ID=TCONS_00015934|Name=TCONS_00015934|organism=Clytia hemisphaerica|type=transcript|length=32230bp|location=Sequence derived from alignment at sc0000222:206973..239202- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000222:206973..239202- >TCONS_00015934 ID=TCONS_00015934|Name=TCONS_00015934|organism=Clytia hemisphaerica|type=CDS|length=109530bp|location=Sequence derived from alignment at sc0000222:206973..239202- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015934 vs. Swiss-Prot (Human)
Match: SMC3 (Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2) HSP 1 Score: 1133.24 bits (2930), Expect = 0.000e+0 Identity = 631/1214 (51.98%), Postives = 867/1214 (71.42%), Query Frame = 2
Query: 269 MYIKQVIIQGFRSYRDQTVIEPFSPKHNVVVGRNGSGKSNFFLAIQFVLSDEFSHMRQEERQQLLHEGSGPRVVSAYVEIIFDNSDNRIPIEKDEITLRRVIGSKKDQYFIDKKNVTRTDVMNLLESAGFSRSNPYYIVKQGKINQLATAKDNDRLKLLREVAGTRVYDERKAESQNILKDTENKREKIEDLLKYIXXXXXXXXXXXXXXXQYQKWDKERRSLEYTIHDXXXXXXXXXXXXXDSSRQNENERTTELQQEVQEATAKIEETNHQIKEAVDKCSICKLEKQQLDEERQEFIQQKTKLELEIKDLQEAIKEDNNAKETDKKQMSKLEEKIKTKEEALSKITPDYNEKKSSEGDISARLKACEQRRTDLYSKQGRQSQFKNKDERDSWIKKELSSIKANIAQKEKQIRRYKDEVSETKQRCVQIDAEIAERNENLEGRKGQMEKTHKDSSELKRKRDELLQARKELWRQENKLEVEMTTTRGDLNKAERDLRQSMSKPVADGIDSVKQVV---QQKNI-----QGVYGPLIENFTCNEKFFTAIDVTGGNKLFNIIVDSDKTGSTILSHVNKMGLRGEITFMPLNRLKFSDVRYPNSSDVLPMLHKVEYNDIFKPAMQLAFGKTLICRNQDVCSQFSKSHDIDTITLEGDKFSRRGTLEGGFSSPNASRLLFQKRIWEYQKKLEEQESELG-DVKTRLQQLDGEITQVLSELQKLETTQIQLRNTYDQQRQDVRNLQKSRQAAEGGLAPKESALTNYQGELERLRGQMKSFQEELGTDLLSQLTTEDQEEVEQLNGEIAELKEKLKVVFNERTKLEIESERIASYLHNNLYKRRDXXXXXXXXXXXXXXXXQHSMKTIELETCNNELEKSNGQVTELNKRTKTLKAEVKSLQNVLEEWKTVEREKQAAIEEDTKLMEXXXXXXXXXXXXREECMRKIRELGSLPADAFEKYQKTSIKALWKKLKEATDELKKYSHVNKKALDQFVSFSEQKEKLVKRKQEIAEGYEAILDMMDVLEHRKHEAILFTFKQVSHNFSDIFKQLVSGGKAQLIMKRAE---AKXXXXXXXXXXXXXXXXXXXXAKQYDEFSGISIKVSFTGKSAETLEMNQLSGGQKTLVALTLIFAIQKCDPAPFYLFDEIDQALDPQYRKSVAAMIHNLADKAQFITTTFRPELLESAENFYGVQFKNKVSHVLSITKEEAKDFVEDEC 3874
MYIKQVIIQGFRSYRDQT+++PFS KHNV+VGRNGSGKSNFF AIQFVLSDEFSH+R E+R LLHEG+GPRV+SA+VEIIFDNSDNR+PI+K+E++LRRVIG+KKDQYF+DKK VT+ DVMNLLESAGFSRSNPYYIVKQGKINQ+ATA D+ RLKLLREVAGTRVYDERK ES +++K+TE KREKI +LLKYIEERL TLE EKEEL QYQKWDK RR+LEYTI+++EL ETR KL+ L + R+ E++ +L+ Q+A K+E+ Q++E K S K EK+QL ERQE I+Q+TKLEL+ KDLQ+ + ++ ++ K+ KL EKI+ K++ L++ P +N K E ARL Q RTDLY+KQGR SQF +K+ERD WIKKEL S+ I K++QI ++ +T+ + + + +++L K ++E+ + E+K K+DEL R LWR+EN + + R DL K ++ LR + K + +GIDS+ +V+ ++K I G +G ++ NF C F+T ++VT GN+LF IVDSD+ + IL NKM L GE+TF+PLN+L D YP ++D +PM+ K+ YN F A + FGKTLICR+ +V +Q +++ +D ITLEGD+ S RG L GG+ SRL QK + + +++L E E++L +++ +++++ EI Q+++++Q++ET Q + + + D +++ L++ RQ +E PK+ +L + + L + +S + ELGTDLLSQL+ EDQ+ V+ LN EI +L+++ + + NER KLE R+ +YL+ NL KR D+++ ++ E+ + T ELE N ++ + + +L+ +A +K LQ +E WK +E+E AI DTK +EK+ N++ +LLKK+EECM+KIRELGSLP +AFEKYQ S+K L++KL++ ELKKYSHVNKKALDQFV+FSEQKEKL+KR++E+ GY++I+++M+VLE RK+EAI TFKQVS NFS++F++LV GGKA L+MK+ + ++ E + +S S SQ S D+F+G+ I+VSFTGK E EM QLSGGQK+LVAL LIFAIQKCDPAPFYLFDEIDQALD Q+RK+V+ MI LA AQFITTTFRPELLESA+ FYGV+F+NKVSH+ IT E AKDFVED+
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKNDVMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMKETEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDLEDTEANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKKDELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNGIDSINKVLDHFRRKGINQHVQNGYHGIVMNNFECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTAYPETNDAIPMISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSHRGALTGGYYDTRKSRLELQKDVRKAEEELGELEAKLNENLRRNIERINNEIDQLMNQMQQIETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNERIKLEGIITRVETYLNENLRKRLDQVEQELNELRETEGGTVLTATTSELEAINKRVKDTMARSEDLDNSIDKTEAGIKELQKSMERWKNMEKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEMAKDFVEDDT 1214 The following BLAST results are available for this feature:
BLAST of TCONS_00015934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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