TCONS_00015936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015936
Unique NameTCONS_00015936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015936 ID=TCONS_00015936|Name=TCONS_00015936|organism=Clytia hemisphaerica|type=transcript|length=699bp
CTGGTACTAGTGCTTgcaaaaatgaaagattgaagAGAATGGAATCTTTC
AAATACAGTCGAATTCTATTTTGGATATTATCAGGCTTTATTATATCAAC
AATCGAGAGTAACAAATGCAAGAAAAAGGAGCCAAAGAATCATCATGGCG
TTCAGCCCTTCATAGTTATTGGTCAAGAAGAAGAAGAgtttaaagaaaat
cttttgagGGCAATCATACCACAGATGTCTACAGAATGGATTGTTCAGTT
CAAATTTAAACTGACTGCTGCTCATACACATATCAAGGTAAAGTGCAATT
TAATCCATTTGTCACAATCGGGAGCTGGAGAAACGTACGGGGATCGTACG
CCGTCAGTTTATGTTTACAAAGAAACTATGGAAATGCGCATCTTCACAGC
CATCaatggaaaacacaaatataaaGGTTACACTGTACAATACGGTATCG
ATTACAACGTAGAGATTCACCAACGATACAAGAGTGGTGGTAAATATACA
TTTTTCATCATCATTAATGGAAAGAGAATTATGAAAACAGTGAATACACA
AGCCGAGCAATTTTACGACGTTAAAGTCTATGCATCGAATCTTTGGGAGC
CGGCTTGTAATGGGACAATCAGTGATTTTAAAATCACAAACTTTTTGTAA
CTAACAATATGGTATTTacgtagacgatgctatcgtccgttagagggAC
Run BLAST on NCBI

protein sequence of TCONS_00015936-protein

>TCONS_00015936-protein ID=TCONS_00015936-protein|Name=TCONS_00015936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
GTSACKNERLKRMESFKYSRILFWILSGFIISTIESNKCKKKEPKNHHGV
QPFIVIGQEEEEFKENLLRAIIPQMSTEWIVQFKFKLTAAHTHIKVKCNL
IHLSQSGAGETYGDRTPSVYVYKETMEMRIFTAINGKHKYKGYTVQYGID
YNVEIHQRYKSGGKYTFFIIINGKRIMKTVNTQAEQFYDVKVYASNLWEP
ACNGTISDFKITNFL
Run BLAST on NCBI

transcript from alignment at sc0000222:260154..262889-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015936 ID=TCONS_00015936|Name=TCONS_00015936|organism=Clytia hemisphaerica|type=transcript|length=2736bp|location=Sequence derived from alignment at sc0000222:260154..262889- (Clytia hemisphaerica)
CTGGTACTAGTGCTTGCAAAAATGAAAGATTGAAGAGAATGGAATCTTTC
AAATACAGTCGAATTCTATTTTGGATATTATCAGGCTTTATTATATCAAC
AATCGAGAGTAACAAATGCAAGAAAAAGGTTTGTTATTCGTTATTTTCAT
CTAAAAAAAAACTTCTTTGAATAAATTTTTCGGTAAGATACTTCAAAGGG
TTCAAAATAACGGAAAACCAGTATTTTTCTCCCCCAAATATGAGTTGGCT
TTTAAAAAAATATAGGTATCAAAATCTTGAAAAACTGATAGACTGATTAC
TTACTACCGGTCTGTCGGTAGCACTTTTCCAATGAAGTATAAGCTCGAAG
GGCTAAAAGCGAATCTCTAACCTTTCTCAGGCAAGAGAAGGCGAGGCCTT
CAAATTTGCACCGTATTTTTGAGGACGGATTGAATCTAGCAATTCTTTGT
TTTCGAATGATATTTTTTTCGAAATTTAGCGGTAAATTTTAGTTTCAATC
TGGCATTTGTACAAAAACCAGGCGGGCCGCACTAGGCCACGCAACTTTGG
TAGAATTTTTTGGCTTCAAATCCTACCGAGGAGATTCGCTTCTAGCCCTT
CAGCCTTACAATTCATTGCACTTATTCCAAATAGCAATTTGCTCGTTCAT
GGTAACGGATTCTTCTTCCTGGGAAATGTAGATAAAATTTTTCAAAGTCT
GATGGATTATTGATTACAGCATTACCATAGTCCAGTTTACTAAGGACGAG
TGGGGTCTCAGCAAGCATGCTTCGAATGCTTTTTCACATTGAATTGACAC
GGGGGTGTGAAACAAGTTAGTCAGAGAGAGAAAAAGAATTTATTCAACAC
GAAATGGAACACAAAATAATAGGAGACACTGGCCTGATATATGAAACATT
GTGTCTGACATGAAACGGGAACGGAAACTTAAAAAGAAAAACCTTAGGCT
GATCGCACCCTCTAACGAATTTGTGCTTCTTATTATCTTCTATACTACCT
GCGTTTTTGTAGAGGTCTGCGATTCAGACTAGTAAAATCTTTAATCTCTT
AACCTTAGGAGCCAAAGAATCATCATGGCGTTCAGCCCTTCATAGTTATT
GGTCAAGGTGAGGTACTTAAATAACTTGAATATACAAGGCAGATACAAAA
AGGAGGCTCAAGAAAACTAAATCGCAATATTATCGCAAAAAATCAGATTT
TGAAGCGTAAATACAGAAATACAGATAAAATGAATTCAGATACAGAATTT
TCGGGAATTTAACTGGAAGCAAAATTTAGAGTTTTTTTCATTTTTCCCTT
CTACTGCCAATTAAGGCGGAATTATATTTATATATTTTACGAAAGATTGT
ATTTCAAGAAGTTTTGGTCAAAATGTTTCTCGGTCGAGAGACGAAAAGAA
TCGATGGTTCTAAGATCGGGTATTCAGTCAATTGAGGGGTTATATGCTCA
GGAATGTCTCTCGAAGGAAGAACAGTATAGAGTCCCCTTCTACTGGCATA
GGGAGACGGTAAAAAACGTTTTTCCCTACTCTTTTAGAAGAAGAAGAGTT
TAAAGAAAATCTTTTGAGGGCAATCATACCACAGATGTCTACAGAATGGA
TTGTTCAGTTCAAATTTAAACTGACTGCTGCTCATACACGTAAATATTGT
TGAATCATTTTCTTCTTCTCTATAACTTGCATGATTTAAAACTCCTGATT
TTTTGAAGCCACAGAAAATTTTATAAGCAGGTCAATACTTTACAATATTA
CCGTATTACTTCGAATAAACATATTTGTACTAAAATATTAATGATGGAAA
TGAAAATTAAGGTTCCAATTCAGTTATANGCCCCCCCCCGGGTTAAAATT
CTTGAATGAAAGCCAAAATAATTAATAAAGTACGGTATTCGTCTCATGTA
TAAATAGAAAATATTTTGGTAGCTTCCTAACTGTCTAAATGACCCCGCTA
AGGGAAGACTGATGTTCGTTGTGAAAGAGAGATTTACTCGTTTTCCTTTA
TTGTTACTGATAATATATTTATAGATATCAATGTATCAATTTATAGTTAC
TTTGACCTGAATCATCCGCCTACTCTACGGTGTGAAAATAAGGGGGGCTA
CGCAGTTGATGGAGGGCTGGAAATTTGAAAAAAAAACATCAAAATGAAAA
GCGTATACAAAGAGAAAAATGAAGGTTAAAAACGCAACCAAAACTTCTAT
TCGATTGCCGAAAGCATGTTAATAAATCTAAGAATCAAATGGCGTTCGAG
ACATATTATAAAAACAAAATTTTAAGATTTACTTTAATTTTCTTTATGTT
ACTCGTGTATTTACAGATATCAAGGTAAAGTGCAATTTAATCCATTTGTC
ACAATCGGGAGCTGGAGAAACGTACGGGGATCGTACGCCGTCAGTTTATG
TTTACAAAGAAACTATGGAAATGCGCATCTTCACAGCCATCAATGGAAAA
CACAAATATAAAGGTTACACTGTACAATACGGTATCGATTACAACGTAGA
GATTCACCAACGATACAAGAGTGGTGGTAAATATACATTTTTCATCATCA
TTAATGGAAAGAGAATTATGAAAACAGTGAATACACAAGCCGAGCAATTT
TACGACGTTAAAGTCTATGCATCGAATCTTTGGGAGCCGGCTTGTAATGG
GACAATCAGTGATTTTAAAATCACAAACTTTTTGTAACTAACAATATGGT
ATTTACGTAGACGATGCTATCGTCCGTTAGAGGGAC

Coding sequence (CDS) from alignment at sc0000222:260154..262889-

>TCONS_00015936 ID=TCONS_00015936|Name=TCONS_00015936|organism=Clytia hemisphaerica|type=CDS|length=2592bp|location=Sequence derived from alignment at sc0000222:260154..262889- (Clytia hemisphaerica)
ATATCAAGGTAAAGTGCAATTTAATCCATTTGTCACAATCGGGAGCTGGA
GAAACGTACGGGGATCGTACGCCGTCAGTTTATGTTTACAAAGAAACTAT
GGAAATGCGCATCTTCACAGCCATCAATGGAAAACACAAATATAAAGGTT
ACACTGTACAATACGGTATCGATTACAACGTAGAGATTCACCAACGATAC
AAGAGTGGTGGTAAATATACATTTTTCATCATCATTAATGGAAAGAGAAT
TATGAAAACAGTGAATACACAAGCCGAGCAATTTTACGACGTTAAAGTCT
ATGCATCGAATCTTTGGGAGCCGGCTTGTAATGGGACAATCAGTGATTTT
AAAATCACAAACTTTTTGTAAAAGAAGAAGAGTTTAAAGAAAATCTTTTG
AGGGCAATCATACCACAGATGTCTACAGAATGGATTGTTCAGTTCAAATT
TAAACTGACTGCTGCTCATACACGAGCCAAAGAATCATCATGGCGTTCAG
CCCTTCATAGTTATTGGTCAAGGGTACTAGTGCTTGCAAAAATGAAAGAT
TGAAGAGAATGGAATCTTTCAAATACAGTCGAATTCTATTTTGGATATTA
TCAGGCTTTATTATATCAACAATCGAGAGTAACAAATGCAAGAAAAAGAT
ATCAAGGTAAAGTGCAATTTAATCCATTTGTCACAATCGGGAGCTGGAGA
AACGTACGGGGATCGTACGCCGTCAGTTTATGTTTACAAAGAAACTATGG
AAATGCGCATCTTCACAGCCATCAATGGAAAACACAAATATAAAGGTTAC
ACTGTACAATACGGTATCGATTACAACGTAGAGATTCACCAACGATACAA
GAGTGGTGGTAAATATACATTTTTCATCATCATTAATGGAAAGAGAATTA
TGAAAACAGTGAATACACAAGCCGAGCAATTTTACGACGTTAAAGTCTAT
GCATCGAATCTTTGGGAGCCGGCTTGTAATGGGACAATCAGTGATTTTAA
AATCACAAACTTTTTGTAAAAGAAGAAGAGTTTAAAGAAAATCTTTTGAG
GGCAATCATACCACAGATGTCTACAGAATGGATTGTTCAGTTCAAATTTA
AACTGACTGCTGCTCATACACGAGCCAAAGAATCATCATGGCGTTCAGCC
CTTCATAGTTATTGGTCAAGGGTACTAGTGCTTGCAAAAATGAAAGATTG
AAGAGAATGGAATCTTTCAAATACAGTCGAATTCTATTTTGGATATTATC
AGGCTTTATTATATCAACAATCGAGAGTAACAAATGCAAGAAAAAGATAT
CAAGGTAAAGTGCAATTTAATCCATTTGTCACAATCGGGAGCTGGAGAAA
CGTACGGGGATCGTACGCCGTCAGTTTATGTTTACAAAGAAACTATGGAA
ATGCGCATCTTCACAGCCATCAATGGAAAACACAAATATAAAGGTTACAC
TGTACAATACGGTATCGATTACAACGTAGAGATTCACCAACGATACAAGA
GTGGTGGTAAATATACATTTTTCATCATCATTAATGGAAAGAGAATTATG
AAAACAGTGAATACACAAGCCGAGCAATTTTACGACGTTAAAGTCTATGC
ATCGAATCTTTGGGAGCCGGCTTGTAATGGGACAATCAGTGATTTTAAAA
TCACAAACTTTTTGTAAAAGAAGAAGAGTTTAAAGAAAATCTTTTGAGGG
CAATCATACCACAGATGTCTACAGAATGGATTGTTCAGTTCAAATTTAAA
CTGACTGCTGCTCATACACGAGCCAAAGAATCATCATGGCGTTCAGCCCT
TCATAGTTATTGGTCAAGGGTACTAGTGCTTGCAAAAATGAAAGATTGAA
GAGAATGGAATCTTTCAAATACAGTCGAATTCTATTTTGGATATTATCAG
GCTTTATTATATCAACAATCGAGAGTAACAAATGCAAGAAAAAGATATCA
AGGTAAAGTGCAATTTAATCCATTTGTCACAATCGGGAGCTGGAGAAACG
TACGGGGATCGTACGCCGTCAGTTTATGTTTACAAAGAAACTATGGAAAT
GCGCATCTTCACAGCCATCAATGGAAAACACAAATATAAAGGTTACACTG
TACAATACGGTATCGATTACAACGTAGAGATTCACCAACGATACAAGAGT
GGTGGTAAATATACATTTTTCATCATCATTAATGGAAAGAGAATTATGAA
AACAGTGAATACACAAGCCGAGCAATTTTACGACGTTAAAGTCTATGCAT
CGAATCTTTGGGAGCCGGCTTGTAATGGGACAATCAGTGATTTTAAAATC
ACAAACTTTTTGTAAAAGAAGAAGAGTTTAAAGAAAATCTTTTGAGGGCA
ATCATACCACAGATGTCTACAGAATGGATTGTTCAGTTCAAATTTAAACT
GACTGCTGCTCATACACGAGCCAAAGAATCATCATGGCGTTCAGCCCTTC
ATAGTTATTGGTCAAGGGTACTAGTGCTTGCAAAAATGAAAGATTGAAGA
GAATGGAATCTTTCAAATACAGTCGAATTCTATTTTGGATATTATCAGGC
TTTATTATATCAACAATCGAGAGTAACAAATGCAAGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008899XLOC_008899Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015936-exon-sc0000222-1575043694:262762..262889TCONS_00015936-exon-sc0000222-1575043694:262762..262889Clytia hemisphaericaexon
TCONS_00015936-exon-sc0000222-1575043694:261783..261831TCONS_00015936-exon-sc0000222-1575043694:261783..261831Clytia hemisphaericaexon
TCONS_00015936-exon-sc0000222-1575043694:261251..261352TCONS_00015936-exon-sc0000222-1575043694:261251..261352Clytia hemisphaericaexon
TCONS_00015936-exon-sc0000222-1575043694:260154..260573TCONS_00015936-exon-sc0000222-1575043694:260154..260573Clytia hemisphaericaexon
TCONS_00015936-exon-sc0000222-1510915933:262762..262889TCONS_00015936-exon-sc0000222-1510915933:262762..262889Clytia hemisphaericaexon
TCONS_00015936-exon-sc0000222-1510915933:261783..261831TCONS_00015936-exon-sc0000222-1510915933:261783..261831Clytia hemisphaericaexon
TCONS_00015936-exon-sc0000222-1510915933:261251..261352TCONS_00015936-exon-sc0000222-1510915933:261251..261352Clytia hemisphaericaexon
TCONS_00015936-exon-sc0000222-1510915933:260154..260573TCONS_00015936-exon-sc0000222-1510915933:260154..260573Clytia hemisphaericaexon
TCONS_00015936-exon-sc0000222-1491911889:262762..262889TCONS_00015936-exon-sc0000222-1491911889:262762..262889Clytia hemisphaericaexon
TCONS_00015936-exon-sc0000222-1491911889:261783..261831TCONS_00015936-exon-sc0000222-1491911889:261783..261831Clytia hemisphaericaexon
TCONS_00015936-exon-sc0000222-1491911889:261251..261352TCONS_00015936-exon-sc0000222-1491911889:261251..261352Clytia hemisphaericaexon
TCONS_00015936-exon-sc0000222-1491911889:260154..260573TCONS_00015936-exon-sc0000222-1491911889:260154..260573Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015936-proteinTCONS_00015936-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000222supercontigsc0000222:260154..262889 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.163958	0.0802037	0.19528	0.154313	0.372345	0.348585	8.05373	1.96494	5.6483	9.11365	0	0	0	0	0.326118	0.668522	0	0	0.91005	0.409745	0.166033	0.150948	0.155473	0	0	0.105954	0.0803623	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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