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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015937 ID=TCONS_00015937|Name=TCONS_00015937|organism=Clytia hemisphaerica|type=transcript|length=3473bpRun BLAST on NCBI protein sequence of TCONS_00015937-protein >TCONS_00015937-protein ID=TCONS_00015937-protein|Name=TCONS_00015937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=717bp MGEEKLLNGGGVQRVDKTRMGVGSWRPDWLQKFNSMKWFLLALSLASFVQRun BLAST on NCBI transcript from alignment at sc0000222:299740..309531- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015937 ID=TCONS_00015937|Name=TCONS_00015937|organism=Clytia hemisphaerica|type=transcript|length=9792bp|location=Sequence derived from alignment at sc0000222:299740..309531- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000222:299740..309531- >TCONS_00015937 ID=TCONS_00015937|Name=TCONS_00015937|organism=Clytia hemisphaerica|type=CDS|length=23694bp|location=Sequence derived from alignment at sc0000222:299740..309531- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015937 vs. Swiss-Prot (Human)
Match: SO4C1 (Solute carrier organic anion transporter family member 4C1 OS=Homo sapiens GN=SLCO4C1 PE=1 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 4.336e-73 Identity = 217/740 (29.32%), Postives = 342/740 (46.22%), Query Frame = 3
Query: 294 DCKKIQASRTQLYKSTR*QNRPDFTELIFISI*LGDKKMGEEKLLNGGGVQRVDKTRMGVGSWRPDWLQKFNSMKWFLLALSLASFVQAITVGGITAVNLQTLETEFGLTSKSTGLIMTGNDISGLLLVTVVSFFGTKASKPKWMGIGSVITGLGIALFALPKLMIGKYEGASNQEGFDPTCQASAGPQGDLQCNENGGGTIGHMAVFMISQLLMGIXXXXXXXXXXXXXDENVSPRAAPVYLGIWFCCTMLXXXXXXXXXXXFLRIHTDMEAPEGVAI--GDPRWVGAWWLGYVXXXXXXXXXXXXXXXXPKRLNSKQAKKREKSIKMGQLPGEEQMKF--TFKGYLKSMFSLCKNRVFMLIVFGTTVRMLYTIGMFTFLIKILILKFGVAPSKAGQSLGFIMMPSLIVGVMLGAVILRRAKIEIAAQTAAKICVIVSVITIGSSFAFLIPGCRNTNIAGIMEPYHNHTEVTGSIASQCNSDCHCKKSLYLPICGSDGRTYHSPCHAGCTKTIVQMDKDGKIALVFGNCGCFPGNHTKSLNIXXXXXXXXXXXXXXXXSSNSTTVANQQGFDMSKLKSMSREQKMALFKQMGIMRKAFFNEATVGKCDRDCKNFILFIICTLFFVMIAFVASTPNKIMVLRSVPDNQRSFALGTQFVIMRGLSFLPGPIIVGGIVDSNCISWGYDKCGKKTNCLDYDIDAMSWTLVWLGFITSAVGTVLYFLAWWWY--PVTSEKVSMN 2495
D ++ + +L K Q P+ S+ + EEKL + ++ G ++ P LQ+ N+ FLL L + Q I V G+ +++ T+E + + S TGLI + DIS LL VSFFG + KP+W+ + + GLG +F+LP+ G+Y+ S F+ TC + C + ++ VF++ QLL+G G TPLYTLG +LD++V + +Y+G + ++LGP IG ++GG L I+ D+ E + DPRW+GAWW+G++ + FPK L + K+ + Q +KF + K + ++ +L KN VFM +V T+ L T G TFL K + +FG+ S A G +++P +G +LG ++ +K + + K + S + + SF F+ C N AG+ E Y+ E+ G++ + CN++C+C +S Y P+CG DG Y SPC AGC+ + V+ NC C + T+ A GF EA GKC+ C +F+ ++ F+A TP + +LR V QRS ALG QF+++R L +PGPII G +DS CI W + CG K C YD M+ LV + + A + Y P ++ VS +
Sbjct: 38 DPQRENSQPQELQKPQEPQKSPE------PSLPSAPPNVSEEKL-RSLSLSEFEEGSYGWRNFHPQCLQRCNTPGGFLLHYCLLAVTQGIVVNGLVNISISTVEKRYEMKSSLTGLISSSYDISFCLLSLFVSFFGERGHKPRWLAFAAFMIGLGALVFSLPQFFSGEYKLGSL---FEDTCVTTR---NSTSCTSSTSSLSNYLYVFILGQLLLGAGGTPLYTLGTAFLDDSVPTHKSSLYIGTGYAMSILGPAIGYVLGGQLLTIYIDVAMGESTDVTEDDPRWLGAWWIGFLLSWIFAWSLIIPFSCFPKHLPGTAEIQAGKTSQAHQSNSNADVKFGKSIKDFPAALKNLMKNAVFMCLVLSTSSEALITTGFATFLPKFIENQFGLTSSFAATLGGAVLIPGAALGQILGGFLV--SKFRMTCKNTMKFALFTSGVALTLSFVFMYAKCENEPFAGVSESYNGTGEL-GNLIAPCNANCNCSRSYYYPVCG-DGVQYFSPCFAGCSNPVAHRKPK-----VYYNCSCI------------------------ERKTEITSTAETFGF-----------------------------EAKAGKCETHCAKLPIFLCIFFIVIIFTFMAGTPITVSILRCVNHRQRSLALGIQFMVLRLLGTIPGPIIFGFTIDSTCILWDINDCGIKGACWIYDNIKMAHMLVAISVTCKVITMFFNGFAIFLYKPPPSATDVSFH 702 The following BLAST results are available for this feature:
BLAST of TCONS_00015937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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