TCONS_00015955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015955
Unique NameTCONS_00015955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015955 ID=TCONS_00015955|Name=TCONS_00015955|organism=Clytia hemisphaerica|type=transcript|length=740bp
CTCTTCTCAGCAATGATAAAAGACCAGATAACGCCACGGCGAATAATACC
ATCCAACCGGCCTAATGACTCTAATACCATCAACAAATTCGCCATCTCGA
CACCTTTGTAAACAATGAACGTTACATTACAAACACTAGTTTCGTTCGAA
ATGTCTGTAATTTACTGTGATCAGGAGATTTAGTCTTCTCTCCAACAATT
AGAGTTCatcatcttcaatttttatgacttttaagTACTTTTTTCTTAAA
TCGTTTTCAGCAACAGAAGTAAGTTGAggatgaaaaatgttttcatttta
tttgatgTTGCTGATTTGTCTTGAGAATCTCTCCCATCAACCATCGCTTC
TATTTGCTGTTGATTCTTCCTGGAGCATGCAGTCTCTATTAACAAAAGTA
TGATCTGTCGATTTTTCTATACAACTGTATTCTAGTCTCTTTCAAAGCTC
ACTGGAAGATCTTGACTGCTTAGAGTCTTTCCCAGGTATAAATTGGTGGA
TTAAGTGTTTACCAGGAGTGGTTCAAAAATTCAATGTTTGGCAAAGTTAT
ACAGTTTGAAATTTCTTCCGAAAATGTAGATCGTTTAGCAATGCCAATCA
ATATATTGAGGAAGTGTCTTGATTTTTTGATAAGATTCTTCAAATTGAAT
CCGATCATTATTCATTGAGTCATCGAATTTTTGATTTGTAACTTTGATGG
AAACATACAGCGTTTTTCAATTGAATTATCTCAACCGAAG
Run BLAST on NCBI

transcript from alignment at sc0000222:380913..381652

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015955 ID=TCONS_00015955|Name=TCONS_00015955|organism=Clytia hemisphaerica|type=transcript|length=740bp|location=Sequence derived from alignment at sc0000222:380913..381652 (Clytia hemisphaerica)
CTTCGGTTGAGATAATTCAATTGAAAAACGCTGTATGTTTCCATCAAAGT
TACAAATCAAAAATTCGATGACTCAATGAATAATGATCGGATTCAATTTG
AAGAATCTTATCAAAAAATCAAGACACTTCCTCAATATATTGATTGGCAT
TGCTAAACGATCTACATTTTCGGAAGAAATTTCAAACTGTATAACTTTGC
CAAACATTGAATTTTTGAACCACTCCTGGTAAACACTTAATCCACCAATT
TATACCTGGGAAAGACTCTAAGCAGTCAAGATCTTCCAGTGAGCTTTGAA
AGAGACTAGAATACAGTTGTATAGAAAAATCGACAGATCATACTTTTGTT
AATAGAGACTGCATGCTCCAGGAAGAATCAACAGCAAATAGAAGCGATGG
TTGATGGGAGAGATTCTCAAGACAAATCAGCAAcatcaaataaaatgaaa
acatttttcatccTCAACTTACTTCTGTTGCTGAAAACGATTTAAGAAAA
AAGTActtaaaagtcataaaaattgaagatgatGAACTCTAATTGTTGGA
GAGAAGACTAAATCTCCTGATCACAGTAAATTACAGACATTTCGAACGAA
ACTAGTGTTTGTAATGTAACGTTCATTGTTTACAAAGGTGTCGAGATGGC
GAATTTGTTGATGGTATTAGAGTCATTAGGCCGGTTGGATGGTATTATTC
GCCGTGGCGTTATCTGGTCTTTTATCATTGCTGAGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008915XLOC_008915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015955-exon-sc0000222-1491911889:380913..381652TCONS_00015955-exon-sc0000222-1491911889:380913..381652Clytia hemisphaericaexon
TCONS_00015955-exon-sc0000222-1510915933:380913..381652TCONS_00015955-exon-sc0000222-1510915933:380913..381652Clytia hemisphaericaexon
TCONS_00015955-exon-sc0000222-1575043694:380913..381652TCONS_00015955-exon-sc0000222-1575043694:380913..381652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000222supercontigsc0000222:380913..381652 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.267252	0	0.0756492	0.148022	0.810911	0.640792	0.515393	1.3671	0.28151	0.418435	0.812287	0.756451	0.266612	0.184586	0.455264	0.854994	0.55172	0.976764	0.142048	0.297285	0.775184	0.756215	0.536246	0.139293	0.143468	0.192063	0.45807	0	0.0741573	0.0755546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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