TCONS_00015959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015959
Unique NameTCONS_00015959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015959 ID=TCONS_00015959|Name=TCONS_00015959|organism=Clytia hemisphaerica|type=transcript|length=1747bp
TTTTGAATAGCCATGGTTGGGTTTCCACCAGGTAGAGTTTTAGAATCACC
ATCAATGAATCGCTGCACCCATTGATCTTTCACCCTATCCATTTGAGATG
CCTTTGTTGACTGGTATTCATGTTTGCCATAATTCAGGTGTTTCAGCATC
AAGTCCActgatgaaaatgatttgacACACATGGGCTCTGAACAATAAAT
GATCTCCTTCTTTGAAGTCTTGGATGCCTTTCCGTAAGATAGATGATTAC
TTTCAAACGGTACTTTGATTGTGTGCTTTAGGATCTGAGGTTCCTTTCCA
ACATTGAATAATCTTCCTTTTCCAATACCGTAGTACTGCCAAACATGATA
CTTGGGCTGTCGATCATCACCACCAACAACATATTTGACTTGGTGGATTT
TGCTGACGTCTTTGATGTTCTTTTCATTTTCgtatttcttcttttcattg
atCTCCATCACCATGCTATTGAAACCACATAAAGCTGTTGCTGTCCTCAA
TGCATCATTCATTTGCTCAGCAGTTTCAATGTTTTTCCCTTGCTCTATGT
AATAATTCATCTGCCTCTTTGCTGTAGCGCTATCACGATCACACTGGTCC
TTTCCTGCCTGTCTTTCATTAAACATGGTTTCAATGAACTGCATTCCCAC
ATTTTTTGGTGGCCAGTGATACTTCCAGGCGAAGAGTACTTCCGTGTGAT
AGCAGCCAGCGTTGTCTGATTTATCCACTAGCTTGGTGATGTGTGGTGCA
TCCTTTTTAATCTGCTTAAGGCATGCAGCGTAGATTGACATTACAGCAGC
CACGTCTTGTGCAGCCTTTCCAATAAACACGATGTATGTCCTCTTTATGA
GATTTCCATCAGGTCCTTTGAAGATGCAGCAAGTCACATGCATACCATTT
CCTGCTTTCCCAAACCATTTTGCCATTGATTCTCGGTAACGCCGATACAG
GAATTTCATGGCGAAATCAATTATGATGAATGCTGTTTGATTATCTAACT
CCTGGAGCAAGTCAGTCTTTTGACCCTCTTGATGAACAACAGTTAAGATA
TGCGCTTTCcacatttctatgtttttgattGCTTGTTCAACATCGTAAAT
GAAGTCCTTTCTTTCTTTAGTTGCGAGATCTTGATTCTGTGTAATGACAG
CAAGTGCCTGCTTCAAAGCTTCTTTTAGATTTTCACAATCATTGCAGTAA
CTCGTGTGGGCATGATTACACTTTTGTTGGAATAGTGGTTCTTTGGGGTC
GGAAAGAGCATGATATCTACAATGGTCAGGAACTTCACAACCATTTTCAT
TGGAACAATTAGCTTTATACTCCCCTTTCAAGTATCTTCTTCCATCAGTT
AATTTTTCAATAACTTTGTCTACAGTCTCTTTGATAGCAGGAGACTTAGA
AACCAAAAACTGTATTACGGTTATGATAAGGTCAAACGAATCCGATCCCT
CAGCTGCCACGTTGTCTAAACCAGCTAAACTTTTTCTCTGACTGGCAGGA
CAACTTTGAAGAATGTTCCATAGAGTCCTTGTCGACGGTCTGCCAGATTC
TTTATCATATCCTTCACTGTCACATGTACCTTCATACAGCCTGATAACCT
CAGCCTTGTGCACAGTTCTAATGACGTTTGGCATTGCAACTGTTTTCTTT
GTTGATAGTTTAACTTGTCTTGTCCCACTGGCAACGTCTTGAATCAAACC
ACtaaGAAACGAGTAGTGAATGAAAATGTCGATCACAAGTTTGTGTC
Run BLAST on NCBI

transcript from alignment at sc0000224:32493..38098+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015959 ID=TCONS_00015959|Name=TCONS_00015959|organism=Clytia hemisphaerica|type=transcript|length=5606bp|location=Sequence derived from alignment at sc0000224:32493..38098+ (Clytia hemisphaerica)
TTTTGAATAGCCATGGTTGGGTTTCCACCAGGTAGAGTTTTAGAATCACC
ATCAATGAATCGCTGCACCCATTGATCTTTCACCCTATCCATTTGAGATG
CCTTTGTTGACTGGTATTCATGTTTGCCATAATTCAGGTGTTTCAGCATC
AAGTCCActgatgaaaatgatttgacACACATGGGCTCTGAACAATAAAT
GATCTCCTTCTTTGAAGTCTTGGATGCCTTTCCGTAAGATAGATGATTAC
TTTCAAACGGTACTTTGATTGTGTGCTTTAGGATCTGAGGTTCCTTTCCA
ACATTGAATAATCTTCCTTTTCCAATACCGTAGTACTGCCAAACATGATA
CTTGGGCTGTCGATCATCACCACCAACAACATATTTGACTTGGTGGATTT
TGCTGACGTCTTTGATGTTCTTTTCATTTTCgtatttcttcttttcattg
atCTCCATCACCATGCTATTGAAACCACATAAAGCTGTTGCTGTCCTCAA
TGCATCATTCATTTGCTCAGCAGTTTCAATGTTTTTCCCTTGCTCTATGT
AATAATTCATCTGCCTCTTTGCTGTAGCGCTATCACGATCACACTGGTCC
TTTCCTGCCTGTCTTTCATTAAACATGGTTTCAATGAACTGCATTCCCAC
ATTTTTTGGTGGCCAGTGATACTTCCAGGCGAAGAGTACTTCCGTGTGAT
AGCAGCCAGCGTTGTCTGATTTATCCACTAGCTTGGTGATGTGTGGTGCA
TCCTTTTTAATCTGCTTAAGGCATGCAGCGTAGATTGACATTACAGCAGC
CACGTCTTGTGCAGCCTTTCCAATAAACACGATGTATGTCCTCTTTATGA
GATTTCCATCAGGTCCTTTGAAGATGCAGCAAGTCACATGCATACCATTT
CCTGCTTTCCCAAACCATTTTGCCATTGATTCTCGGTAACGCCGATACAG
GAATTTCATGGCGAAATCAATTATGATGAATGCTGTTTGATTATCTAACT
CCTGGAGCAAGTCAGTCTTTTGACCCTCTTGATGAACAACAGTTAAGATA
TGCGCTTTCcacatttctatgtttttgattGCTTGTTCAACATCGTAAAT
GAAGTCCTTTCTTTCTTTAGTTGCGAGATCTTGATTCTGTGTAATGACAG
CAAGTGCCTGCTTCAAAGCTTCTTTTAGATTTTCACAATCATTGCAGTAA
CTCGTGTGGGCATGATTACACTTTTGTTGGAATAGTGGTTCTTTGGGGTC
GGAAAGAGCATGATATCTACAATGGTCAGGAACTTCACAACCATTTTCAT
TGGAACAATTAGCTTTATACTCCCCTTTCAAGTATCTTCTTCCATCAGTT
AATTTTTCAATAACTTTGTCTACAGTCTCTTTGATAGCAGGAGACTTAGA
AACCAAAAACTGTATTACGGTTATGATAAGGTCAAACGAATCCGATCCCT
CAGCTGCCACGTTGTCTAAACCAGCTAAACTTTTTCTCTGACTGGCAGGA
CAACTTTGAAGAATGTTCCATAGAGTCCTTGTCGACGGTCTGCCAGATTC
TTTATCATATCCTTCACTGTCACATGTACCTTCATACAGCCTGATAACCT
CAGCCTTGTGCACAGTTCTAATGACGTTTGGCATTGCAACTGTTTTCTTT
GTTGATAGTTTAACTTGTCTTGTCCCACTGGCAACGTCTTGAATCAAACC
ACtaaattgaataaaatcaagaaaatgatTGATCTGGTGATTTGTCAGTT
TGTTGCGGTAATATTTGCCAGGCTCTAGGGGTTTACCAGCTTGTCCAAGT
GATGCATGTTTTCTTGCTTTTTCAATCTGGTTTTTTTTTACGCTTGGGAA
CATGGAGAGCATCTCAGCAATTGTCATCTTGTAATCACCATTTTCATCCT
TTCCACAAAGTATCGATAAAAGTTGAACTTTGACATTAGAGCTATTGGCT
GCGGTAACCGCGTCTTGAAGAGCTTGTGTGGTTAGTAGGTTGAATGATTT
TGCGGCCTGTCCTGAAAATTCTTGTTTCAACCTTTCAGACTGGCCAGGTG
CAATATTTTCGAGCACAGTATCCACTGCCATGATGCTTTTTCTCATGACT
CTCTGCTGACTCCTTGGGTCTATTCCCCTACGAATGTGAATTGTATTTGA
ATTGTACAATTCAAATGTATTTCAAAGAAGGTTCAGTTACAATTCAAATA
ATAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAGAATATAGTTAGCACTT
CAAATGCACTTCATAATGACATTTCAAAAGCAATCCATGAACTGCTTTTG
AATTGTAtaatttgaattgtatttgaatTGTGAATTCACAAGAAAATAGT
tagcaattcaaaagcatttCGAAAACACATTTCAAAAGCAATCTGTGAAA
TGTTTTGGAAATATctaatttgaattgtatttgaaaCATAGAAGTCATTC
CATTGCACATTGCACATTTCAAATGCAATCTAAATCATGCATTGTGGGTA
ATGCAATTAAAATTGGACAAGATGGCAGAATTTGAAAACACCAGAAGATT
CAGAAAATTTGCAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAA
AATCAACAACTTACATACATTATTGCCAGGGCGGGAActatatgaaaata
tataatgtaacaaccatttttcaaaaaagccaCAATCAACAACCTCTTAA
TACATTCTNNNNCAGTACTGGATTACATTTGAATTATCGAATGTTGCTAT
TTTTGTTTTCCTGgacatttcaaataccatccaTTCTGGATTGTATTtga
aatacattcgaaaactcttttgaaaatcaaaaatacaattcaaaagcATT
TCAGATTGTGAATCACATTTGGattgttcttcttttatttccaaaaaaat
tcaaatacatTCAGATTTTGAATTGCAAATGGATTGTCCTTGGAATGTAT
TTGAATTGCAAAACAATTCGTAAGGGTTGAATCAAAATCTGTGTGTAGCT
GATATTTGATGGGTGTCCAATCATCTTTCATACTGCTCATAGATTTATTG
AAGTTTTCCTTTTCGCTCCCTGCGTCTATGTATTCATCATCTGAAGTATA
CAGTTGTGACCCACCATCTTGGTTACATTGACTGGATTGAAAGGACTCCT
CCATATCTGCAACAGTCTCCTCTAATGGTGGTATTGTTGATGAACTCCGT
GTTTGTGGTGGCTGAAAGGTTTCTGCTGGATTAAAGTCATCAAGAAAGTC
ATCAATTCTCTGACTGCTGATTTCATATGCTTCATTTGATGTGTCTACAA
TAGTTTGATGGCTGTGATCTGCAGTACACAGTAAGCATTTATTTGATATG
TCTACATTGTTCTGTTTGAGCAAAGAAGGATGACTACAAAGTCGACAATT
ATTGCACCATTTGGAACCAATGGCAACTGTGACAGAGGTTATTGCATTGC
TAAATAGGACGTTACATTCAAGTGTTGCTTGAATCgatatctttcttctt
tttaaatgCTTCTTAGAGGTAGCTTTATGAGCAGGATATTGACACGATGC
TGGTGGTTGCCATCCTAATCCAAACTTGAAACGGTGTTTAGGACATATCA
AAGCCTCCTTAGGAATCGCGTTTATTTTGGATCTGGAAAGGATCAGCCAT
CGCTCATTTGCATTTGGACAGTTATCAATCTTATCACTAGGTAATCCCAA
TGATGTTAAATGGCAAGTAATATCATCTTGACATTGTGAAAATTGCACTA
TCTCGCTAGGCAGAGTACATTTGAACCAATTCAAGCTGCATTCCTCAGAA
AGATGCTCCCCAATGAAACAAGAGATCTTCTTCTTTTTGCTATTGCTTCT
TGTGGAAACCATTTGAATTTCTGCCAAAGGAAGACAATATTTTATTAATA
AATCTTAAATAGAACTAGTGAAAGGTTTGTTGATGATATTATTATTTGCA
CTCTTTCTGTCTCAGATTGTTATTATCATGTTCatatttttatggatttt
tatgGCATTTTGAGCCTTGATGTCTTTATAAAAATTGATCTTATTGAAAA
AGAGTGTATGCAGCATATGTGATTAATACAATACCCAGTTTTTTACACat
caaaagagagaaaaaacaaacaaacctgGTCATGAATTACAATAGCAGTT
GTCACTTTCTGGAGAGCTTCTTCTGTGGTTTTGTGGTTTTCaagtgtgaa
ttgttttgtttgtttttggccATTATGTCCGATTTCTACCAAGTTGGCAG
TGAAACTCAAAATAAATTTACCAAATTGgcaataataataaaatttcaaa
aatttttcctttGCTTTAGAGCATCAAATCTGTCGTTACAAAACACTCTA
AAGTTCAAAAGCCATAAAGTTATCTATCAGTAAAGTTTGTTAAATACAGA
ACTTTCACCTATAGATATTTTACATTTTCCCTTTTTCTGCAAGAACTTAA
AGACTTAGTAAATGACTTATTTACTTCGATTTATGAGGTTGCATATGATG
ATGTATGTAATATTGAAAGAGGCTTGTTGGGCTGAAAAAGACCCATCTAA
AAGCAGTAAATGATTTTGAAGATCAATTAACATTGATTGTTTGATTATGA
GACAAAAAGGAAACGAAACGAGTAGTGAATGAAAATGTCGATCACAAGTT
TGTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008919XLOC_008919Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015959-exon-sc0000224-1491911889:32493..34197TCONS_00015959-exon-sc0000224-1491911889:32493..34197Clytia hemisphaericaexon
TCONS_00015959-exon-sc0000224-1510915933:32493..34197TCONS_00015959-exon-sc0000224-1510915933:32493..34197Clytia hemisphaericaexon
TCONS_00015959-exon-sc0000224-1575043694:32493..34197TCONS_00015959-exon-sc0000224-1575043694:32493..34197Clytia hemisphaericaexon
TCONS_00015959-exon-sc0000224-1491911889:38057..38098TCONS_00015959-exon-sc0000224-1491911889:38057..38098Clytia hemisphaericaexon
TCONS_00015959-exon-sc0000224-1510915933:38057..38098TCONS_00015959-exon-sc0000224-1510915933:38057..38098Clytia hemisphaericaexon
TCONS_00015959-exon-sc0000224-1575043694:38057..38098TCONS_00015959-exon-sc0000224-1575043694:38057..38098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:32493..38098 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0840005	0.178868	0.177202	0.140771	0.0192331	0.201684	0.0653688	0.125448	0.0764493	0	0	0.172455	0	0	0	0	0	0	0.0537976	0.0460859	0	0	0.173866	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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