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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015968 ID=TCONS_00015968|Name=TCONS_00015968|organism=Clytia hemisphaerica|type=transcript|length=2656bpRun BLAST on NCBI transcript from alignment at sc0000224:120505..131399+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015968 ID=TCONS_00015968|Name=TCONS_00015968|organism=Clytia hemisphaerica|type=transcript|length=10895bp|location=Sequence derived from alignment at sc0000224:120505..131399+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015968 vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 3.411e-25 Identity = 71/192 (36.98%), Postives = 105/192 (54.69%), Query Frame = 1
Query: 43 ELIFIIDKSGSIGRKNFALSLKFVQELTRFFSISPSTTRVASISYSTSVRTEFQLNNYLNRECLTSAIRRIRYTAGATATGPAL----QQAITLFQSARRSAKKVVFLLTDGKSNRGIKPSIPAAQLKNSGVDIFVLGIGSNVNVLELKSIASSXXXXXXXXXXXDLQRLINALRQKPRDVCRGRGKKLDEC 606
+L+F++D S S+GR NF L F+ L F I TRV + YS+ RTEF LN Y R+ L +AI++I Y G T TG A+ + T AR KV ++TDGKS ++ IPA +L+N GV++F LGI + + ELK IAS+ ++ V N + +++ + VC G ++L E
Sbjct: 140 DLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQDEVE--IPARELRNVGVEVFSLGIKA-ADAKELKQIAST-PSLNHVFNVANFDAIVDIQNEIISQVCSGVDEQLGEL 327 HSP 2 Score: 97.0561 bits (240), Expect = 2.797e-20 Identity = 82/325 (25.23%), Postives = 141/325 (43.38%), Query Frame = 1
Query: 43 ELIFIIDKSGSIGRKNFALSLKFVQELTRFFSISPSTTRVASISYSTSVRTEFQLNNYLNRECLTSAIRRIRYTAGATATGPAL----QQAITLFQSARRSAKKVVFLLTDGKSNRGIKPSIPAAQLKNSGVDIFVLGIGSNVNVLELKSIASSXXXXXXXXXX--XDLQRLINALR-------QKPRDVCRGRGKKLDECGRRCSCVR----GKLVNCCRVRKDFPSMSAREKELYVKAYKTMTTQQPYKRKYDALVNIHRTF---FQTPIHEQREFLPWHRYYLLQLENILREVDCRVTVPYWDWSLWSHDPWSANAIWSPIA 957
+++ ++D S SIGR NF F+ + F I P ++A YS RTE+QLN + +++ L A+ + Y G T TG AL QQ R A+K+ L+TDGKS ++ P+ +LK+ GV++F +GI N + +ELK IA+ ++ L R+++ L + P D+ + E R V V+ +V +P + +E YV +T T + K + + +VN++ + P+ + LP VP +++ P + + W P+
Sbjct: 1199 DIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQDDVE--APSKKLKDEGVELFAIGI-KNADEVELKMIATDPDDTHAYNVADFESLSRIVDDLTINLCNSVKGPGDLEAPSNLVISERTHRSFRVSWTPPSDSVDRYKVEY-YPVSGGKRQEFYVSRMETSTVLKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLP---------------------VPVVSLNIYDVGPTTMHVQWQPVG 1498 HSP 3 Score: 90.1225 bits (222), Expect = 3.980e-18 Identity = 54/154 (35.06%), Postives = 92/154 (59.74%), Query Frame = 1
Query: 43 ELIFIIDKSGSIGRKNFALSLKFV-QELTRFFSISPSTTRVASISYSTSVRTEFQLNNYLNRECLTSAIRRIRYTAGATATGPAL----QQAITLFQSARRSAKKVVFLLTDGKSNRGIKPSIPAAQLKNSGVDIFVLGIGSNVNVLELKSIAS 489
+++F+ D S SIG NF +KF+ + F ISP+ +V+ + YS V++EF+LN Y ++ A++ IRY G T TG AL ++ +T R++ KV+ ++TDG+S +K + A ++ SG +FV+G+ ++V+ EL +IAS
Sbjct: 2323 DIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKA--ALVIQQSGFSVFVVGV-ADVDYNELANIAS 2473 HSP 4 Score: 88.9669 bits (219), Expect = 9.456e-18 Identity = 53/153 (34.64%), Postives = 86/153 (56.21%), Query Frame = 1
Query: 43 ELIFIIDKSGSIGRKNFALSLKFVQELTRFFSISPSTTRVASISYSTSVRTEFQLNNYLNRECLTSAIRRIRYTAGATATGPAL----QQAITLFQSARRSAKKVVFLLTDGKSNRGIKPSIPAAQLKNSGVDIFVLGIGSNVNVLELKSIAS 489
+++F++D S SIG NF F++ L + F ISP+ +++ + YS TEF L + E + AI Y G+T TG A+ ++ + +R + KV+ L+TDGKS+ + PA +L+NS V+IF +G+ V EL++IAS
Sbjct: 440 DIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSDAFRD--PAIKLRNSDVEIFAVGVKDAVRS-ELEAIAS 589 The following BLAST results are available for this feature:
BLAST of TCONS_00015968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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