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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015986 ID=TCONS_00015986|Name=TCONS_00015986|organism=Clytia hemisphaerica|type=transcript|length=1799bpRun BLAST on NCBI protein sequence of TCONS_00015986-protein >TCONS_00015986-protein ID=TCONS_00015986-protein|Name=TCONS_00015986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=526bp MAVKMEGPLTKWTNVVQGWQYRWFVLDDHTGLLSYYTSKDRMMRGARRGCRun BLAST on NCBI transcript from alignment at sc0000224:375238..402568+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015986 ID=TCONS_00015986|Name=TCONS_00015986|organism=Clytia hemisphaerica|type=transcript|length=27331bp|location=Sequence derived from alignment at sc0000224:375238..402568+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000224:375238..402568+ >TCONS_00015986 ID=TCONS_00015986|Name=TCONS_00015986|organism=Clytia hemisphaerica|type=CDS|length=23670bp|location=Sequence derived from alignment at sc0000224:375238..402568+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00015986 vs. Swiss-Prot (Human)
Match: OSBL9 (Oxysterol-binding protein-related protein 9 OS=Homo sapiens GN=OSBPL9 PE=1 SV=2) HSP 1 Score: 202.986 bits (515), Expect = 5.380e-56 Identity = 96/183 (52.46%), Postives = 137/183 (74.86%), Query Frame = 3
Query: 222 MAVKMEGPLTKWTNVVQGWQYRWFVLDDHTGLLSYYTSKDRMMRGARRGCLRLKGGVVGINDEDDSTFTITCDHRTFHFQAQDSEERRKWVKNLEETILKHSGDGILSSFDNASM-TEEELNRKMQEAEAYFRILTQQVKKMESQI-NHSSNMKAERSFILKDSLTQMIETMGQTIELLHNAK 764
MA MEGPL+KWTNV++GWQYRWFVLD + GLLSYYTSKD+MMRG+RRGC+RL+G V+GI+DEDDSTFTIT D +TFHFQA+D++ER KW+ LEETIL+H+ L D+ + + ++ ++K+ EA+AY +IL +Q+K + ++ N + + ++ LK++ M+E++ I LL AK
Sbjct: 1 MASIMEGPLSKWTNVMKGWQYRWFVLDYNAGLLSYYTSKDKMMRGSRRGCVRLRGAVIGIDDEDDSTFTITVDQKTFHFQARDADEREKWIHALEETILRHTLQ--LQGLDSGFVPSVQDFDKKLTEADAYLQILIEQLKLFDDKLQNCKEDEQRKKIETLKETTNSMVESIKHCIVLLQIAK 181 HSP 2 Score: 170.629 bits (431), Expect = 4.709e-45 Identity = 77/101 (76.24%), Postives = 86/101 (85.15%), Query Frame = 3
Query: 1464 HGSVISHLISQVKIGMDLTKVTLPTFILERRSLLEMYADFFAHPDLFKGIPDLDDAGDRMLQVLKWYLSSFHAGRKSTVAKKPYNPILGETFQCFFDLTDD 1766
H SVI HL+SQV++GMDLTKV LPTFILERRSLLEMYADFFAHPDLF I D D DRM+QV+KWYLS+FHAGRK +VAKKPYNPILGE FQC + L +D
Sbjct: 371 HKSVIMHLLSQVRLGMDLTKVVLPTFILERRSLLEMYADFFAHPDLFVSISDQKDPKDRMVQVVKWYLSAFHAGRKGSVAKKPYNPILGEIFQCHWTLPND 471 The following BLAST results are available for this feature:
BLAST of TCONS_00015986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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