TCONS_00015993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015993
Unique NameTCONS_00015993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015993 ID=TCONS_00015993|Name=TCONS_00015993|organism=Clytia hemisphaerica|type=transcript|length=864bp
CGCTACATAATCCCGTGCATGGAAGGATAGGTGGGACAATGAGCAGCACA
GGCTCCGCAGGTGCACCTGAATTTCAACTCCACCATGGATTCGTTGACAA
AATTTGGTCAGACTGGCAAAAGTTGAGCCCCGCGAATCTGAATGCATACT
TCCCTGGCATAAACACTCGAATGACTGCTACGAACTATTATCCAAGAGAT
TTGATTGATTTGACTAAACAACCAGGATGTGTAAGAGTGTGTTATGAAGA
TCCAACAATTAACAGTGGAAAAAGAGTCAAAACTTTCTTGCAAAGTCTTT
CACCGTCACAACTTTCAAGATTACCCAGAATGCCATTCACAGCGACCACA
AAAGCAGACAACGACCGATTCGGAGTATCAAAAGCAGACCGTGCTCTTGC
TAAGCGACTGGAAGCTATTGGCAGAAGAGGTAAgtcttagctctagttta
gacgccCTACNACGACTGGAAGCCATTGGTAGAAGAGGCGTGCTTCGTGG
CAGATCAGCAAGAATAAATTTCAAGACTCAATTGGAGCGAACACTAGGAT
TCCAATTGATTGCACCACCACACATCCGCCCAATCCGACCGATCGGCCCT
ATAAGACCACCCGGCCGACCACGACCACCAGCTCCAGGTGGTTTTAAATC
AAGCTTGGCAGAAGATGAAGTCGTGACAGAGCTGGATCTTGAAGCTGGAA
ATGCCAAGGATTTTGTTGAAGAGCAAGATGGTATGAATTCAAACTATGCC
GAAAAGGAGAACCTGGAATTTgctaggctgcatgcatccccaaattagtt
ttgatataggggatgcgaatcaggctctgatatcgcttccgagaaaatta
ccgaatagctatgT
Run BLAST on NCBI

transcript from alignment at sc0000224:53562..56759-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015993 ID=TCONS_00015993|Name=TCONS_00015993|organism=Clytia hemisphaerica|type=transcript|length=3198bp|location=Sequence derived from alignment at sc0000224:53562..56759- (Clytia hemisphaerica)
CGCTACATAATCCCGTGCATGGAAGGATAGGTAACTTTCTTTACATATTA
TTGTTTATACCCAATATGGCACCAGCATATTAAGGTTTAGTTTTAATTGA
AAGGTCTGATGATGCTGATGTAGTGAAAACAAGTGCGACAAGATTTGAAA
AAGGTTTTGAAAAAATGAAAACACATTGAATAAAAAACATTCCTCAAACA
AAGGGATTTTTACTGATACTCTTTCGAATGTTTTTATGTTTATAATAAAT
AAAACGTTTTCTATCTTATATTTATCATCAAAACATTCGATTGTATATTT
GCTCGAAATCAACTTTGCTATTTTTTTGTTTACAAAAGCAATAGAATGTG
AGGTCGCATCTCGAAACAACTTTCGATCTTTCAATTGTGTTAATCATATT
TGCCATTCCAAATTGTGGTAAACCAGAAAAAACAACAAGTATTTTATCTA
AAAAATTTTTAGCAAAAGCTTTTCGGTACAACCATCATCAGTGCTATGTT
ACATGATGTTGAAATGTAAAAGAAAAAAAAAGTAAAATCGTTTACTTGTT
TGCAGGATATCGTTGTGTAAAAAAGTAGCTTTAAATTATCTGACTCAGCA
TGAAGACACTAAGCTCCTTTTATTCACGTAAACAGAAGTATATTTTTGTC
CTTTAAAATAATTCATAGAGAACTATCCATTTATAGCTTTATACTTAATT
CATAACACATTGGCATAAATATTTTGCTAAAACATATACGAACCGAAAGG
ACGTTTGAGTGCCGTCAAACTGAAATCTGAAAAACTTGTACATTTGAAAG
AAATGTTCCTCCCATCTAGTTTTTATACAGCTGCTAAAGATATTCATCGA
ATTTTCCACAGTTGGAAAAATTTAATTTTTTTTAATTTAATTACACGTGG
TTCATGGAATGTATACATATTATTGCTGTTGTATCTCGTTAGCAAGTTTA
TGTACTTGTACTTTTGAGGGCGACGGTGTGACTGAAGCGATTTGGAGCAA
CACCCAGTTTTGACCCACAAATAAAGGATGGTAAAAGTACTGATTTACCG
TCGTCCTCAGTCATTTAGGATCTAGGCAAATCAGTCAGAAAAATCGTCTC
CGTCGCAGAAAACAACCATACATAAACTCGCTAATAACTCTTTTTAGGTG
GGACAATGAGCAGCACAGGCTCCGCAGGTGCACCTGAATTTCAACTCCAC
CATGGATTCGTTGACAAAATTTGGTCAGACTGGCAAAAGTTGAGCCCCGC
GAATCTGAATGCATACTTCCCTGGCATAAACACTCGAATGACTGCTACGA
ACTATTATCCAAGAGATTTGATTGATTTGACTAAACAACCAGGATGTGTA
AGAGTGTGTTATGAAGATCCAACAATTAACAGTGGAAAAAGAGTCAAAAC
TTTCTTGCAAAGTAAGGAATACCATTGTGTACATTTTTTCTTGAAATGTT
AATTACACTTTTTTTATAAGAACATCTAAAAATTTTGCGAAGCCTTGTTC
TTAACTTTTCGGGTTTCAAGCCTAAAAACATGTTCTTATTTGGACCATTT
TTTGAGTATTTTTGTTCATTTTTATAAGAAAACAGGTGTTTTAGAGCCCG
CAAAGCCTTAAAATGTTCTTAACTTCTTTTTAAGATTTCGGCCACCGAAG
CCTTTTGTTCTTATATAGTTTGTTCTTATATAAAAAAACGTGTATGCGAT
GTTAAAAAGGTTATTTGTTCACATTAACATCCAACGCTTTTTTAAAGGGG
TTTCTTAGGTTTTTTAAAAGTAGGAAATGGTTTAATAATAATATTCAATT
CTATAATTGAAGAAAATACAACAAACCCAATGATTCTGAACTTTACAAGT
CACCCACCACTAAAGGGTACTTTGAGGAACGATTACCGAGTGGTAATCAG
CATGGCACCAGCGCCACAAATCATAAGTTTCTGGTTTAAATCCCCGCTCC
TTCATATGTTCCTCTGTTCCTTTTTGTTAGTAGATAGCCTGCCAGATGCC
CGTGGACCCGGTTAAAAGTCCTAGATCACTAGGCTATCTACGTAAAATAT
TGACTCTTTACTTTAATCATCCTTCAACATCCTTCTCATTCCAATAGGTC
TTTCACCGTCACAACTTTCAAGATTACCCAGAATGCCATTCACAGCGACC
ACAAAAGCAGACAACGACCGATTCGGAGTATCAAAAGCAGACCGTGCTCT
TGCTAAGCGACTGGAAGCTATTGGCAGAAGAGGTAAGTCTTAGCTCTAGT
TTAGACGCCCTACNACGACTGGAAGCCATTGGTAGAAGAGGTAAGCCTTA
TTCAAACTTGCACCACGAAAAACTGGGTTCAAATAATAATGATGGTACTT
AGGGAGGATTTTTCTTGAGATGGTGTTGAAGTTTTTTGATTCCATTCTGT
CTTAATTTTTTGGTTTGGTTTACTGTTTATCGTGTTGGTATAATGATGGT
ACTTTCTGTAACCGCGATCATGATAAGAGAAAAAGAGAGAGAGAAGTGAA
CCCTCCGAATCATCCGGAATGGGCCCTTCCCCTGGATAGATACCTACCCT
AGGATAGGGAAATTACCACGCTTACCGAACACTGCGAACCCTGCACTCGC
GCACGACAGAGTTACGATGATACCCGAACTACAAGGAACCATGATAAATT
CTAAGAAATTTGAAATATAATTTACAGGGCTATAATTCATAGGACATTAC
TATACCTCAAATAACTTAACTAGAAAATATCGGTTTCATTTGTTTATGTT
AAAAAAACTCAGTTTGAAACCAATAAAAAAAGACTTTATTTAGTGAGTCA
ATTTATGTCTCTTTTCTTTAGGCGTGCTTCGTGGCAGATCAGCAAGAATA
AATTTCAAGACTCAATTGGAGCGAACACTAGGATTCCAATTGATTGCACC
ACCACACATCCGCCCAATCCGACCGATCGGCCCTATAAGACCACCCGGCC
GACCACGACCACCAGCTCCAGGTGGTTTTAAATCAAGCTTGGCAGAAGAT
GAAGTCGTGACAGAGCTGGATCTTGAAGCTGGAAATGCCAAGGATTTTGT
TGAAGAGCAAGATGGTATGAATTCAAACTATGCCGAAAAGGAGAACCTGG
AATTTGCTAGGCTGCATGCATCCCCAAATTAGTTTTGATATAGGGGATGC
GAATCAGGCTCTGATATCGCTTCCGAGAAAATTACCGAATAGCTATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008933XLOC_008933Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015993-exon-sc0000224-1575043694:56730..56759TCONS_00015993-exon-sc0000224-1575043694:56730..56759Clytia hemisphaericaexon
TCONS_00015993-exon-sc0000224-1575043694:55349..55612TCONS_00015993-exon-sc0000224-1575043694:55349..55612Clytia hemisphaericaexon
TCONS_00015993-exon-sc0000224-1575043694:54470..54662TCONS_00015993-exon-sc0000224-1575043694:54470..54662Clytia hemisphaericaexon
TCONS_00015993-exon-sc0000224-1575043694:53562..53938TCONS_00015993-exon-sc0000224-1575043694:53562..53938Clytia hemisphaericaexon
TCONS_00015993-exon-sc0000224-1510915933:56730..56759TCONS_00015993-exon-sc0000224-1510915933:56730..56759Clytia hemisphaericaexon
TCONS_00015993-exon-sc0000224-1510915933:55349..55612TCONS_00015993-exon-sc0000224-1510915933:55349..55612Clytia hemisphaericaexon
TCONS_00015993-exon-sc0000224-1510915933:54470..54662TCONS_00015993-exon-sc0000224-1510915933:54470..54662Clytia hemisphaericaexon
TCONS_00015993-exon-sc0000224-1510915933:53562..53938TCONS_00015993-exon-sc0000224-1510915933:53562..53938Clytia hemisphaericaexon
TCONS_00015993-exon-sc0000224-1491911889:56730..56759TCONS_00015993-exon-sc0000224-1491911889:56730..56759Clytia hemisphaericaexon
TCONS_00015993-exon-sc0000224-1491911889:55349..55612TCONS_00015993-exon-sc0000224-1491911889:55349..55612Clytia hemisphaericaexon
TCONS_00015993-exon-sc0000224-1491911889:54470..54662TCONS_00015993-exon-sc0000224-1491911889:54470..54662Clytia hemisphaericaexon
TCONS_00015993-exon-sc0000224-1491911889:53562..53938TCONS_00015993-exon-sc0000224-1491911889:53562..53938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:53562..56759 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.297995	0	0	0.00734493	0	0	0	0	0	0	1.06761e-06	0	0	0	0	0	0	5.01351	1.18734	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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