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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016007 ID=TCONS_00016007|Name=TCONS_00016007|organism=Clytia hemisphaerica|type=transcript|length=3469bpRun BLAST on NCBI protein sequence of TCONS_00016007-protein >TCONS_00016007-protein ID=TCONS_00016007-protein|Name=TCONS_00016007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp MTTVVNTTLTTITPGNQTTNGTALPPGNNRLNPYAVIFVEVICILVFFLGRun BLAST on NCBI transcript from alignment at sc0000224:315104..366002- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016007 ID=TCONS_00016007|Name=TCONS_00016007|organism=Clytia hemisphaerica|type=transcript|length=50899bp|location=Sequence derived from alignment at sc0000224:315104..366002- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000224:315104..366002- >TCONS_00016007 ID=TCONS_00016007|Name=TCONS_00016007|organism=Clytia hemisphaerica|type=CDS|length=6120bp|location=Sequence derived from alignment at sc0000224:315104..366002- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016007 vs. Swiss-Prot (Human)
Match: PNKP (Bifunctional polynucleotide phosphatase/kinase OS=Homo sapiens GN=PNKP PE=1 SV=1) HSP 1 Score: 298.901 bits (764), Expect = 7.841e-89 Identity = 153/375 (40.80%), Postives = 223/375 (59.47%), Query Frame = 3
Query: 240 KKQKIQSTWKNYGDAVKGLKPLSYMTCKDLEGSTKIAGFDMDGCLIVPKSNAKFPKNADDWKFMLSQVQPKLKALRGDGYKVVIFTNQAGIEKNKAKESDIQGKITKMMNELGFPVQAFISTGENVYRKPYTGSWDFMASNCNEGITIDKENSFFVGDASGRPKDWQKG-KKKDHSCSDRKFAANVGVRFYTPEEYFLGMKAFSRFEWGSINPKTLLSSAQNLDVKQFEDITSKDTELVILVGFPASGKSTFAKCYLESKGYVVVNRDTLKTQEKCEKTVHEALKAKKSVAVDNTNPSKEARQAYVKIAKTYNMPVRCFQFDVTIEAAKHMNFYRQLITNGKHRRVPDVGYNVFKSRYVAPDKSEGFKEIVKIPF 1361
+ +K W+N L+ L T ++ K+AGFD+DG LI +S FP DW+ + ++ KL+ L +GYK+VIFTNQ I + K + + K+ ++ +LG P Q ++T +YRKP TG WD + N+G I +S FVGDA+GRP +W G KKKD SC+DR FA N+G+ F TPEE+FL A + FE + +P+T +S + L + + + S E+V+ VGFP +GKSTF K +L S GYV VNRDTL + ++C T ALK K VA+DNTNP +R YV+ A+ +P RCF F T+E A+H N +R++ T+ H V D+ ++ ++ AP +EGF I++IPF
Sbjct: 139 RMRKSNPGWEN-------LEKLLVFTAAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLRELEAEGYKLVIFTNQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTGMWDHLQEQANDGTPISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKWPA-AGFELPAFDPRT-VSRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFLKKHLVSAGYVHVNRDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTATLEQARHNNRFREM-TDSSHIPVSDMVMYGYRKQFEAPTLAEGFSAILEIPF 503 The following BLAST results are available for this feature:
BLAST of TCONS_00016007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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