TCONS_00016020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016020
Unique NameTCONS_00016020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016020 ID=TCONS_00016020|Name=TCONS_00016020|organism=Clytia hemisphaerica|type=transcript|length=692bp
actctttttttggttagcagattttttgctaagttcggaacggttttgtg
agcctgattcgcatcccctatatcaaaacttatcagaggggatgtgtgca
gcctaggAATTTGCAGGCCAGAAAAATAGGATGGATTTGGAGGATAAAAA
TGCAAAGGATACTGCTGTCGACCAACAATACGTAAACGCAGACTTTGCAG
AACGGGGAAATGAGGGTTTTGCAGAACAAGCGAACGACATTGAAACAAAA
CAGGAAGATTTTGCTGATCAAGAAGACGCACCAGATTCGAATTTTGCAGA
ACATGAGAGTGAAGATTTTGCAGAAcaagataaagaaaacaatgaTTTTG
GAGAACAAGCACCTACTAGTGATGTCAACGACGAAGATGTTCAAGAGGAC
TTTGAAGATGTTGAAGAGGACTTTGAAGATGTTGAAGAGGActttgatga
agatgaagaagaagccTAAGAATAATAAGATGAGGCGAACGTGAAAAATT
CTTATTATTTATAACCATTGTAGTTAACTTATCTGCTAGGCaaaaactag
gctagtcttacttCTTTTATCTGGGcatttaaagtatttttaaaaagatt
tttcacaaCAATGAAATTCTAAGATTGGGGATTCACTAATTAAAAAATGG
TCATTATAGCAATATTTTAGCAATTAGTAGAATAAAATAACT
Run BLAST on NCBI

protein sequence of TCONS_00016020-protein

>TCONS_00016020-protein ID=TCONS_00016020-protein|Name=TCONS_00016020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MDLEDKNAKDTAVDQQYVNADFAERGNEGFAEQANDIETKQEDFADQEDA
PDSNFAEHESEDFAEQDKENNDFGEQAPTSDVNDEDVQEDFEDVEEDFED
VEEDFDEDEEEA
Run BLAST on NCBI

transcript from alignment at sc0000224:52416..53107

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016020 ID=TCONS_00016020|Name=TCONS_00016020|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at sc0000224:52416..53107 (Clytia hemisphaerica)
AGTTATTTTATTCTACTAATTGCTAAAATATTGCTATAATGACCATTTTT
TAATTAGTGAATCCCCAATCTTAGAATTTCATTGttgtgaaaaatctttt
taaaaatactttaaatgCCCAGATAAAAGaagtaagactagcctagtttt
tGCCTAGCAGATAAGTTAACTACAATGGTTATAAATAATAAGAATTTTTC
ACGTTCGCCTCATCTTATTATTCTTAggcttcttcttcatcttcatcaaa
gTCCTCTTCAACATCTTCAAAGTCCTCTTCAACATCTTCAAAGTCCTCTT
GAACATCTTCGTCGTTGACATCACTAGTAGGTGCTTGTTCTCCAAAAtca
ttgttttctttatcttgTTCTGCAAAATCTTCACTCTCATGTTCTGCAAA
ATTCGAATCTGGTGCGTCTTCTTGATCAGCAAAATCTTCCTGTTTTGTTT
CAATGTCGTTCGCTTGTTCTGCAAAACCCTCATTTCCCCGTTCTGCAAAG
TCTGCGTTTACGTATTGTTGGTCGACAGCAGTATCCTTTGCATTTTTATC
CTCCAAATCCATCCTATTTTTCTGGCCTGCAAATTcctaggctgcacaca
tcccctctgataagttttgatataggggatgcgaatcaggctcacaaaac
cgttccgaacttagcaaaaaatctgctaaccaaaaaaagagt

Coding sequence (CDS) from alignment at sc0000224:52416..53107

>TCONS_00016020 ID=TCONS_00016020|Name=TCONS_00016020|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000224:52416..53107 (Clytia hemisphaerica)
TTAggcttcttcttcatcttcatcaaagTCCTCTTCAACATCTTCAAAGT
CCTCTTCAACATCTTCAAAGTCCTCTTGAACATCTTCGTCGTTGACATCA
CTAGTAGGTGCTTGTTCTCCAAAAtcattgttttctttatcttgTTCTGC
AAAATCTTCACTCTCATGTTCTGCAAAATTCGAATCTGGTGCGTCTTCTT
GATCAGCAAAATCTTCCTGTTTTGTTTCAATGTCGTTCGCTTGTTCTGCA
AAACCCTCATTTCCCCGTTCTGCAAAGTCTGCGTTTACGTATTGTTGGTC
GACAGCAGTATCCTTTGCATTTTTATCCTCCAAATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008947XLOC_008947Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016020-proteinTCONS_00016020-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016020-exon-sc0000224-1491911889:52416..53107TCONS_00016020-exon-sc0000224-1491911889:52416..53107Clytia hemisphaericaexon
TCONS_00016020-exon-sc0000224-1510915933:52416..53107TCONS_00016020-exon-sc0000224-1510915933:52416..53107Clytia hemisphaericaexon
TCONS_00016020-exon-sc0000224-1575043694:52416..53107TCONS_00016020-exon-sc0000224-1575043694:52416..53107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:52416..53107 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.348835	0	0	0.243665	2.52105	1.3432	0.881889	2.35854	1.22037	0.250005	0.559636	0.768885	1.16616	1.06034	0.505371	1.55609	0	0.0899036	0.216852	0	0	0	4.60677	3.36299	0	0.110556	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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