TCONS_00016050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016050
Unique NameTCONS_00016050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016050 ID=TCONS_00016050|Name=TCONS_00016050|organism=Clytia hemisphaerica|type=transcript|length=2833bp
TTTAGATAAATTGAAGATAAGAATaaataagaataaaaaataatcatgga
ttcaaagaaaatgaaagaaaaaggataTGTTTCACGGAAGAAATGCCCTC
ATTGCAAAGTGGAGGTCAATGCAGCGGCCAAGCAATGCAAAGATTGcaac
aaaaaaatcgaaaaaaagaagatcaaaccaaaacaaaatgtATCAAATAA
TCCTTCGAGGACAAAATCTCAAATAAAGAGAAGAATTGATGATCTCCACA
GATTGGATAAGCAGGATGTGTTGGTCATCTACCATTGGGAGACTCCGAAA
CGAAGGTACCTTAGATTTGAAAGCAGTGACGGAGATATGGCAAAAGTTGT
TGCCAAAAATGGAACACTCTCGCATTTACGGCGAGTTTTTCTACATCTAA
TTGATGaGGCTAGGAAAGAAAGAACACCTGGAGAAAAAGAACAACAAGAA
GACAAAAAAGGAGAAGATCAAGAAGAAGACGACGAAGAAAGAGTGGACGA
CGAAGAAGAAGATGACGAAGAAGAAGaggacgaagaagaagaaaaagaag
aggaCGTACCAATGGTGGACGTCGAAATCACCTATCgtaatgatgatgat
gacgacGACGATTTCGGGAGGGCTGCTTTCCCTATTGAATCATTTTAAAG
CGATTCAAAGGTTTCATCTTTTATAGACGATTGTTACTTTAATAGGATTA
ATTTCGCGGGCCaaagaaatcttgaaattttttgatttaatttcgtAAGT
CAAGAGTTTAAGAAATTTAGCGTGGATTTAAATTCGCTAATGACCCAAAA
ATGGACATGGTTTcgacaactttttttttaatcaaatggTAGTTTCGAAA
acttcgcgtggatttaatttcgcgaaaagggcAAATAATCaggaaatcgc
gaaatttaatcctatTAATATACTTTATGAGATTATTAACTAAAACAATT
TTCCGATATCAAGTAGAAAATTCGActgaaatgtttaaaattttaaccTC
AAAGTGCAGATCATTTACTGAGAGTGCAGAATTATAACGTTCGTTGTGTT
ATATCGTACTcaattttagctgtttttaaagaaacaaaAGTGATTTATTA
TTTAGACATTTATTATATTTTACTTATTTATTAGTTATATTGACAAACAA
CGACATTTTTATACATCGCTATAAAAAACTAAAGCAAAATTTGtatgtaa
aaaaaagaagacttttttAAGGTAACATCAGTAACATCTTTCGTGCCATT
GCAACAAAcattgtatttttttgaaattgatagaaatatTCGGTTGTCAT
ACTAACTATCTCTTATCTgcattttttgttaaattcttttgttttaaaat
atttttattaaatcaTTTCAATCTATTTTGTTGTAATCGCAAAAAGATGT
TGCCGTATTCGCAGAATTCATTATATCGGACTATATATTTAGctatatgt
aaaaaataaacagGACATTTTTATCAGACCATATTTTTAGCTATAtgtaa
aaagacaaaaaggacATTTTATCAGGCCATATTTTTAGCTATATGTAAAA
AAACGAAAAGGACATTTTATCAGACTATATATTTAGCTATACCAtatgta
aaagcaaaaaaagacatttttattgTATCATATTTTTAAGTTAATTTAGG
TTTTTACTAAAGTTTATATATTTATATAGGGATAGGATAGAATCTGAAAG
GTACATACTTTATTTGAAGAAACTTTAGTGGAACAGTTTTTCGTGAGTTT
TGTCGCGAAAGTAAAATTTCATTAGGCCCATTCGCGAAAAAAATACTCTT
AACAAATATGCGAAAGTTATTTGCAAGGACgtgcaatcatggacaaaagg
tctggagacttttcaaaaatcccTCAAAAGTACTGGAAATGACTGGAAAT
GAGTGAGTGAACTTCAGCCACACCGGTGGTGGATGAACCAGAGAGCtctg
aaaagttctttataattGATTAAACCATCTCGAATAATGGTCTAATTAGT
GACTAATTAgatgtctttttgaaaaagttaaagaGAAAAACTCATGGAAC
CCTCAATCTTCAATGTCAGAAAAAAAGGCctgaaaactttgcaaaaattc
aTTGTTGAGTGGTAGACTTGTCACCCAAACTGTCCAAATCCAATAAAACA
ACATAGGCTCTGGTCAAAATGGGTTTCCAgagcttattttgaaaattctc
atgtatatattttctaaaagtctacaaccttttgtccgggaTTGTGATTC
GTTTTTCAATAATCAAAATGCTATTAATCAATATCAATGGAAACAGGAAA
TGTTAATGTTTCACATTGTTcctaataaaatgaaatttgtgCATTTCGCG
AATTTCTCAACACGCNTTcctaataaaatgaaatttgtgCATTTCGTGAA
TTTCTCAACACGCGAGAGTTTCTTCAACCATTAACAACAAGAAAGTTGAT
ATCACATATCACAGACCAATTTAAGAAAACTGTCCCTTTCGGAAATTAAA
TTAGCTCTTCACCAGTGAACAAATAAACAACTTGTTATAAATTGTATCAT
TCCTATTAACTTTTAACCGTTTTGACAATGATAAACGAACCGATTTTAGT
ATTGCAATTTGGTGAAAGTAATATTTTTTACAagtaaagataaaaaattt
cccTTGGTAAGTCAGAAGAagaatttattcatttttgcattttttgatta
ACTTTTGAACAAACGTTATTTGTAGGTATTCATTTCGAAGTGTAAATAGA
GAGATATTTAGGATTGAAAGATTTCTTTTCCACATCCAATGAAAAATTAG
ATGtataataaaattgaaatgatgAACTTCCAA
Run BLAST on NCBI

transcript from alignment at sc0000225:412959..417802+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016050 ID=TCONS_00016050|Name=TCONS_00016050|organism=Clytia hemisphaerica|type=transcript|length=4844bp|location=Sequence derived from alignment at sc0000225:412959..417802+ (Clytia hemisphaerica)
TTTAGATAAATTGAAGATAAGAATaaataagaataaaaaataatcatgga
ttcaaagaaaatgaaagaaaaaggataTGTTTCACGGAAGGTAATATTAC
TATAATTCCTATTAATtaatgtttttgagaaaattgccaGTTGTAGGGGG
TGAAAAGGGGAGggaaaattataaagaaaatatgcaattaaaatcttaag
agtACACAGAAGTGAAAGTTTTACAAAGATAAAACTATTGAATTTTATCA
GTATCTTCTAAAACTAACGAGTGAccataaaaaaaagtaaacctCGATAA
TAAAGAACAAGAACAATTTTCTctttgttactcgttgttaatcgttaatt
gtacctcaaaaattttgattactACAGTACTTACAGAtaatatttgttct
tttttatcgTTGCAACATTCATTTTGATATTAAGGAACCTTTGGACTGta
ttttttaaactaaattAATTTCAACTCTAAATTATGATTTAGAAATGCCC
TCATTGCAAAGTGGAGGTCAATGCAGCGGCCAAGCAATGCAAAGATTGca
acaaaaaaatcgaaaaaaagaagatcaaaccaaaacaaaatgtATCAAAT
AATCCTTCGAGGACAAAATCTCAAATAAAGAGAAGAGTAAGAACGATTTA
TACTAAATCTCTACGTATTGAAATGTCTTCAATACCATGCAATACGAGCA
GCTGTGAATATAACAATTTAGCCCTTGTATTTCTAGCGATATATATGCCT
CGCTTTATAGGATTAACTGCATGCCTGGCTGGATAATATTTCATCAGCCC
TATTTTAAAGGTTTAATCAAGTGTTATGTTTTATTAATAAAAGTATTACT
CTGTTTTTAGATTGATGATCTCCACAGATTGGATAAGCAGGATGTGTTGG
TCATCTACCATTGGGAGACTCCGAAACGAAGGTGAGCTTTTAGTAATTGC
ACTTTGACTGCAAAATTTAAAGACTTTTGAATACTTCAATCCGAACGCTA
CAATAACTTGTCAACTTATATTTCTTtctggtgcacccggtatatatatt
tttataggaaaaaaaaacggagagaaaaaatttcttgtgaaaatgggaaa
aaaaacattcatccaaaatcacccaaaacctttaataaaacTGTCTGAAA
TTTTATATCATATCTTCGTTCAGGTACCTTAGATTTGAAAGCAGTGACGG
AGATATGGCAAAAGTTGTTGCCAAAAATGGAACACTCTCGCATTTACGGC
GAGTTTTTCTACATCTAATTGATGGTGAGTTTTACAATTCATGTTTTATA
AGGCTGCCGTCCTTTTGCTATATCTTTTTGATGATATCGTGCAatacatt
tgaaatattttgaatattttaatagGGTACTGAAGCTTTAGATGTGTATc
aaatactgtgaaaatttttagtgtGATAGCgattgatttattgaaattca
attgttgCTTTCCTAAAATCGATGCGgaaattttatgcatttttatgCGT
TAcgcatttttatattttttacttcagaGGCTAGGAAAGAAAGAACACCT
GGAGAAAAAGAACAACAAGAAGACAAAAAAGGAGAAGATCAAGAAGAAGA
CGACGAAGAAAGAGTGGACGACGAAGAAGAAGATGACGAAGAAGAAGagg
acgaagaagaagaaaaagaagaggaCGTACCAATGGTGGACGTCGAAATC
ACCTATCgtaatgatgatgatgacgacGACGATTTCGGGAGGGCTGCTTT
CCCTATTGAATCATTTTAAAGCGATTCAAAGGTTTCATCTTTTATAGACG
ATTGTTACTTTAATAGGATTAATTTCGCGGGCCaaagaaatcttgaaatt
ttttgatttaatttcNTTGAATACTTCAATCCGAATGCCTACAATAACTT
GTCAACTTATATTTCTTtctggtgcacccggtatatatatttttatagga
aaaaaaacggagagaaaaaatttcttgtgaaaataggaaaaaaaacattc
atccaaaatcacccaaaacctttaataaaacTGTCTGAAATTTTATATCA
TATCTTCGTTCAGATACCTTAGATTTGAAAGCAGTGACGGAGATATGGCA
AAAGTTGTTGCCAAAAATGGAACACTCTCGCATTTACGGCGAGTTTTTCT
ACATCTAATTGATGGTGAGTTTTACAATTCATGTTTTATAAGGCTGCCGT
CCTTTTGCTATATCTTTTTGATGATATCGTGCAatacatttgaaatattt
tgaatattttaatagGGTACTGAAGCTTTAGATGTGTATcaaatactgtg
aaaatttttagtgtGATAGCgattgatttattgaaattcaattgttgCTT
TCCTAAAATCGATGCGgaaattttatgcatttttatgCGTTAcgcatttt
tatattttttacttcagaGGCTAGGAAAGAAAGAACACCTGGAGAAAAAG
AACAACAAGAAGACAAAAAAGGAGAAGATCAAGAAGAAGACGACGAAGAA
AGAGTGGACGACGAAGAAGAAGATGACGAAGAAGAAGaggacgaagaaga
agaaaaagaagaggaCGTACCAATGGTGGACGTCGAAATCACCTATCgta
atgatgatgatgacgacGACGATTTCGGGAGGGCTGCTTTCCCTATTGAA
TCATTTTAAAGCGATTCAAAGGTTTCATCTTTTATAGACGATTGTTACTT
TAATAGGATTAATTTCGCGGGCCaaagaaatcttgaaattttttgattta
atttcgtAAGTCAAGAGTTTAAGAAATTTAGCGTGGATTTAAATTCGCTA
ATGACCCAAAAATGGACATGGTTTcgacaactttttttttaatcaaatgg
TAGTTTCGAAAacttcgcgtggatttaatttcgcgaaaagggcAAATAAT
CaggaaatcgcgaaatttaatcctatTAATATACTTTATGAGATTATTAA
CTAAAACAATTTTCCGATATCAAGTAGAAAATTCGActgaaatgtttaaa
attttaaccTCAAAGTGCAGATCATTTACTGAGAGTGCAGAATTATAACG
TTCGTTGTGTTATATCGTACTcaattttagctgtttttaaagaaacaaaA
GTGATTTATTATTTAGACATTTATTATATTTTACTTATTTATTAGTTATA
TTGACAAACAACGACATTTTTATACATCGCTATAAAAAACTAAAGCAAAA
TTTGtatgtaaaaaaaagaagacttttttAAGGTAACATCAGTAACATCT
TTCGTGCCATTGCAACAAAcattgtatttttttgaaattgatagaaatat
TCGGTTGTCATACTAACTATCTCTTATCTgcattttttgttaaattcttt
tgttttaaaatatttttattaaatcaTTTCAATCTATTTTGTTGTAATCG
CAAAAAGATGTTGCCGTATTCGCAGAATTCATTATATCGGACTATATATT
TAGctatatgtaaaaaataaacagGACATTTTTATCAGACCATATTTTTA
GCTATAtgtaaaaagacaaaaaggacATTTTATCAGGCCATATTTTTAGC
TATATGTAAAAAAACGAAAAGGACATTTTATCAGACTATATATTTAGCTA
TACCAtatgtaaaagcaaaaaaagacatttttattgTATCATATTTTTAA
GTTAATTTAGGTTTTTACTAAAGTTTATATATTTATATAGGGATAGGATA
GAATCTGAAAGGTACATACTTTATTTGAAGAAACTTTAGTGGAACAGTTT
TTCGTGAGTTTTGTCGCGAAAGTAAAATTTCATTAGGCCCATTCGCGAAA
AAAATACTCTTAACAAATATGCGAAAGTTATTTGCAAGGACgtgcaatca
tggacaaaaggtctggagacttttcaaaaatcccTCAAAAGTACTGGAAA
TGACTGGAAATGAGTGAGTGAACTTCAGCCACACCGGTGGTGGATGAACC
AGAGAGCtctgaaaagttctttataattGATTAAACCATCTCGAATAATG
GTCTAATTAGTGACTAATTAgatgtctttttgaaaaagttaaagaGAAAA
ACTCATGGAACCCTCAATCTTCAATGTCAGAAAAAAAGGCctgaaaactt
tgcaaaaattcaTTGTTGAGTGGTAGACTTGTCACCCAAACTGTCCAAAT
CCAATAAAACAACATAGGCTCTGGTCAAAATGGGTTTCCAgagcttattt
tgaaaattctcatgtatatattttctaaaagtctacaaccttttgtccgg
gaTTGTGATTCGTTTTTCAATAATCAAAATGCTATTAATCAATATCAATG
GAAACAGGAAATGTTAATGTTTCACATTGTTcctaataaaatgaaatttg
tgCATTTCGCGAATTTCTCAACACGCNTTcctaataaaatgaaatttgtg
CATTTCGTGAATTTCTCAACACGCGAGAGTTTCTTCAACCATTAACAACA
AGAAAGTTGATATCACATATCACAGACCAATTTAAGAAAACTGTCCCTTT
CGGAAATTAAATTAGCTCTTCACCAGTGAACAAATAAACAACTTGTTATA
AATTGTATCATTCCTATTAACTTTTAACCGTTTTGACAATGATAAACGAA
CCGATTTTAGTATTGCAATTTGGTGAAAGTAATATTTTTTACAagtaaag
ataaaaaatttcccTTGGTAAGTCAGAAGAagaatttattcatttttgca
ttttttgattaACTTTTGAACAAACGTTATTTGTAGGTATTCATTTCGAA
GTGTAAATAGAGAGATATTTAGGATTGAAAGATTTCTTTTCCACATCCAA
TGAAAAATTAGATGtataataaaattgaaatgatgAACTTCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008969XLOC_008969Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016050-exon-sc0000225-1491911889:412959..413048TCONS_00016050-exon-sc0000225-1491911889:412959..413048Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1510915933:412959..413048TCONS_00016050-exon-sc0000225-1510915933:412959..413048Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1575043694:412959..413048TCONS_00016050-exon-sc0000225-1575043694:412959..413048Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1491911889:413451..413594TCONS_00016050-exon-sc0000225-1491911889:413451..413594Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1510915933:413451..413594TCONS_00016050-exon-sc0000225-1510915933:413451..413594Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1575043694:413451..413594TCONS_00016050-exon-sc0000225-1575043694:413451..413594Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1491911889:413819..413889TCONS_00016050-exon-sc0000225-1491911889:413819..413889Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1510915933:413819..413889TCONS_00016050-exon-sc0000225-1510915933:413819..413889Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1575043694:413819..413889TCONS_00016050-exon-sc0000225-1575043694:413819..413889Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1491911889:414132..414232TCONS_00016050-exon-sc0000225-1491911889:414132..414232Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1510915933:414132..414232TCONS_00016050-exon-sc0000225-1510915933:414132..414232Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1575043694:414132..414232TCONS_00016050-exon-sc0000225-1575043694:414132..414232Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1491911889:415376..417802TCONS_00016050-exon-sc0000225-1491911889:415376..417802Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1510915933:415376..417802TCONS_00016050-exon-sc0000225-1510915933:415376..417802Clytia hemisphaericaexon
TCONS_00016050-exon-sc0000225-1575043694:415376..417802TCONS_00016050-exon-sc0000225-1575043694:415376..417802Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000225supercontigsc0000225:412959..417802 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.134704	0.0985184	0.0762596	0.018652	0.908281	0.538302	0.757678	0.486397	1.39053	0.949076	0.511776	1.1214	0.43674	0.38378	1.14734	0.666941	0.771055	0.479366	0.823363	0.693018	2.31176	2.31077	0.675716	1.00047	0.795443	1.30689	1.43147	0.640652	0.467223	0.476026
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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