TCONS_00016051 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016051
Unique NameTCONS_00016051
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016051 ID=TCONS_00016051|Name=TCONS_00016051|organism=Clytia hemisphaerica|type=transcript|length=382bp
GAACAAAATAGGGTCCAACATGATTTATGGAAtaaagattgaaaaatatt
taatggTTGCAATTTTACTTATTTCATTTTTGGCGTTGACATCAGCGAGA
AGCATGTCAGAAAAAAGATGGCTGTATAACAATGAAGaaTCGGTTTTCAA
GCGAGCAACGCGCCCACAGATTAATTGTATCGATATCATGGATGAGATAG
AGTGCAAGAAACAGTTGAATAATTTTGGAAGCTGTCATAGTATTTATTAT
CCTTTTGATATTTTCTGCGCAAAATTTTGTGATATTTGTGTTtagaattt
ggtatttttagttACTtaatttttgttagttttaactTGTATCATATAAT
AGGTCCTAAAATATAACTATAattgagtctct
Run BLAST on NCBI

transcript from alignment at sc0000225:4464..6487-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016051 ID=TCONS_00016051|Name=TCONS_00016051|organism=Clytia hemisphaerica|type=transcript|length=2024bp|location=Sequence derived from alignment at sc0000225:4464..6487- (Clytia hemisphaerica)
GAACAAAATAGGGTCCAACATGATTTATGGAATAAAGATTGAAAAATATT
TAATGGTTGCAATTTTACTTATTTCATTTTTGGCGTGTAAGTATATTGAA
TTTTATTTCAATTTTACCCGTTTTAATGCTATTTTATGCAAACAAATTGT
TAAAGTTTAATTTTTGGTTTAATTTTAGCTAATTAGATCACACAAAGTGA
TGACCAGCTTCTGGAAATGGCTTCAAAAGCCTGCACACAACGTCATTTCA
ACGTTTTTCTGATATTCGGAACGTCCATATAACGTTAGATGAACGTTGAA
ACAACGTTGTTTGTCAGCTGGGTAAAAAAAGGCTTCCTGTTTTTGATGGA
CACTTAAAGCTAAAATGATGTTCATCTAAGCATCGATTTAATAATAAATG
CTAAGTCCAATACACTCTTTTTTAAAGAAACAATGAGGCAAAAATAAGAA
TATTTTAAGAACAATGCTGACTTTTAAAATGGCCAGATTTTAAATGATTA
AGACCTAGCTTCATCAAAAAGTTTCTTATAAAGAAAAAAGAGGGGCTTTG
CCACTCGGAAGTCAAATACTGAGGTGGAGCACACCACACCTACTCCTAGT
AACTTACTGCCTAAATCAGATTACCCAATATAAGCTACCCATTCGCTGAG
TTGACAGTGGCCGAGGATCGAACCCACAACCCCATGGATTGCAAGCCGGG
GGGGTGCTCGATTCCAAAACAACCATACGTGCAGCCAAAAATTAGGCCTT
TGAAATCGGTCCCTTACAGTGCAGAGCAAATTTTGCAAAAATTTGAGCGA
AAAATCGACCCTTAAGGTGAATTTTCTTTAAATTCTTTGACCATTTTCAG
ACAAAATATGATCAGATTTTCGAAATTTTACATCCTTAGAGTGCAATCTT
TCTCATCTGCGCTGATTTCGACCCTTACAGTGAACTTTGGGAAACTTGGA
AAATATAGCCTTAAGGGCCGCATGTGTGGTAGGTCATTTACAAGATTTTC
AAAAAATGCACCGTAAGGGTCGGTTTCAAGGGCCTAATTTTGGGCCGCAC
GTATGGTCGTTTTGGAATTGAGTGCCCCGCCCCCCGGGATTGCAAGGCGA
ATGCTCTACCAACTGAGCTACCCACCCCAACAGAAGTCGAAAGACTACTT
TATAATTGTAAATTCTACATTTTAGTGACATCAGCGAGAAGCATGTCAGA
AAAAAGATGGCTGTATAACAATGAAGGTGAGACAAAAGTAGTTATTTTTC
TTCGATAAACCGCAAAAAGTTTTCACCAATTCTCAAGAAACAAACAAAAA
GATAATATCCAGATTGCCCTTTTCATCAGTTTAATTCTTACTTTCCGCAA
TCTTGTACCCGGGGCCCACTTTGAACCACATTGTGATTTTACTGATGGGC
GTTAGTTCAGTCGTGAGTGCTTTCAGAATCATAAAAAAGTTAATTAAGGG
ACTGAGTCCAAGTTTACTTTTTCAAGATTCTCAAAGATCAGGTCTTGCTT
CAGCTACTTTATTGAAAGCAAAGGGTTATTGCTCAATATATCTAGTTTGT
TGTCCTAAACAAAAAACTTCGTAGCCCAGATCTTTCCTATTTTTTATGAT
CGCAATGGCTTCAGCTTTAGCAAGGCAGACTTAGCACAGTTTTCTGTGCT
CGTATTTTGACTGGTTGAGAATCTCGAGAAAGCAATTATTACATGCCTAA
TGGCTATTGAGAATTATCTATATAGCGTCCGTTTGGAAATGGTTAAAATG
CTTCTAAACTACTTTTTCAATTATTTTAGAATCGGTTTTCAAGCGAGCAA
CGCGCCCACAGATTAATTGTATCGATATCATGGATGAGATAGAGTGCAAG
AAACAGTTGAATAATTTTGGAAGCTGTCATAGTATTTATTATCCTTTTGA
TATTTTCTGCGCAAAATTTTGTGATATTTGTGTTTAGAATTTGGTATTTT
TAGTTACTTAATTTTTGTTAGTTTTAACTTGTATCATATAATAGGTCCTA
AAATATAACTATAATTGAGTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008970XLOC_008970Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016051-exon-sc0000225-1575043694:6402..6487TCONS_00016051-exon-sc0000225-1575043694:6402..6487Clytia hemisphaericaexon
TCONS_00016051-exon-sc0000225-1575043694:5262..5312TCONS_00016051-exon-sc0000225-1575043694:5262..5312Clytia hemisphaericaexon
TCONS_00016051-exon-sc0000225-1575043694:4464..4708TCONS_00016051-exon-sc0000225-1575043694:4464..4708Clytia hemisphaericaexon
TCONS_00016051-exon-sc0000225-1510915933:6402..6487TCONS_00016051-exon-sc0000225-1510915933:6402..6487Clytia hemisphaericaexon
TCONS_00016051-exon-sc0000225-1510915933:5262..5312TCONS_00016051-exon-sc0000225-1510915933:5262..5312Clytia hemisphaericaexon
TCONS_00016051-exon-sc0000225-1510915933:4464..4708TCONS_00016051-exon-sc0000225-1510915933:4464..4708Clytia hemisphaericaexon
TCONS_00016051-exon-sc0000225-1491911889:6402..6487TCONS_00016051-exon-sc0000225-1491911889:6402..6487Clytia hemisphaericaexon
TCONS_00016051-exon-sc0000225-1491911889:5262..5312TCONS_00016051-exon-sc0000225-1491911889:5262..5312Clytia hemisphaericaexon
TCONS_00016051-exon-sc0000225-1491911889:4464..4708TCONS_00016051-exon-sc0000225-1491911889:4464..4708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000225supercontigsc0000225:4464..6487 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.276553	0	6.32771	5.18343	1.03687	2.78272	3.94757	3.27787	6.54663	3.39937	23.5224	13.2464	12.7777	13.7279	5.88594	4.10614	4.36209	4.06192	1.4108	1.71016	0.880714	1.37553	6.74872	3.60121	0.227616	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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