TCONS_00016069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016069
Unique NameTCONS_00016069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016069 ID=TCONS_00016069|Name=TCONS_00016069|organism=Clytia hemisphaerica|type=transcript|length=471bp
AGGAAGTCCCAGAACAGATAACCTTCGCTtgataaaagcaaacaaagact
ttgCCAACCTTAgccaaaagctgtcaatatctagcctcagtagcagcgac
gatgagctgccaacaaaacatttttaaattgtaaagtagcgttgactttt
ttTGGCCTTTGTTGTTACCTTTTCGTCAACATAAAAcaaactattacata
catattACATACATGCATTCAAAAAGCgactggatctagtggtatggatt
tgctaccacctcaagcaaagccaaaaaacGGAGCCTGTCAAATTCAACCG
GGTCATTCATCAGAGATATCCTGTCTATCGAAATCTATAAGTGGCCCCCG
GGCTAGACTGAACTTtgcattttgattattttgatggCACTCAAGTGAAG
TAGACTACATACCGCTCTCTCCATCCCGATATGTTTAGAGATAGCCATCT
AATCTATCAAGAAGCTACGAG
Run BLAST on NCBI

transcript from alignment at sc0000225:47768..48238

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016069 ID=TCONS_00016069|Name=TCONS_00016069|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at sc0000225:47768..48238 (Clytia hemisphaerica)
CTCGTAGCTTCTTGATAGATTAGATGGCTATCTCTAAACATATCGGGATG
GAGAGAGCGGTATGTAGTCTACTTCACTTGAGTGccatcaaaataatcaa
aatgcaAAGTTCAGTCTAGCCCGGGGGCCACTTATAGATTTCGATAGACA
GGATATCTCTGATGAATGACCCGGTTGAATTTGACAGGCTCCgttttttg
gctttgcttgaggtggtagcaaatccataccactagatccagtcGCTTTT
TGAATGCATGTATGTaatatgtatgtaatagtttgTTTTATGTTGACGAA
AAGGTAACAACAAAGGCCAaaaaaagtcaacgctactttacaatttaaaa
atgttttgttggcagctcatcgtcgctgctactgaggctagatattgaca
gcttttggcTAAGGTTGGcaaagtctttgtttgcttttatcaAGCGAAGG
TTATCTGTTCTGGGACTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008979XLOC_008979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016069-exon-sc0000225-1491911889:47768..48238TCONS_00016069-exon-sc0000225-1491911889:47768..48238Clytia hemisphaericaexon
TCONS_00016069-exon-sc0000225-1510915933:47768..48238TCONS_00016069-exon-sc0000225-1510915933:47768..48238Clytia hemisphaericaexon
TCONS_00016069-exon-sc0000225-1575043694:47768..48238TCONS_00016069-exon-sc0000225-1575043694:47768..48238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000225supercontigsc0000225:47768..48238 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.55683	0.284244	0.995661	1.69085	2.00871	0.865803	0.348185	1.46685	0.886308	0.84805	0.411569	0.285314	0.782109	0.935259	0.243363	0.352037	0.101653	0	1.00762	1.23863	0.557643	0.957897	0	0.282307	1.16308	0.129753	0.614249	0.208189	0.160896	0.653797
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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