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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016073 ID=TCONS_00016073|Name=TCONS_00016073|organism=Clytia hemisphaerica|type=transcript|length=840bp
ATTTCCAAGGAGAAATAATCCAAAGATAAAAGATtattggaaaattggaa
aatgaaaatgaaataaaataaagaatatttCTACTTGTTCAAAAATCATA
ATATCTGACTTAAAACATTTGAGTCTTGTTTATTTCAAATCTATACTCAG
ATTTTTAATATATCTACCACCCTTCACAATTTTTAACTGTTTCATAATAA
GGGTAGTGATACACTTGCCCATGATAAACATAAGTTCTATAACGTGTCAC
TTGTTGATAACGACAATACAAACTTGCACCGCTGTCAACAACCCGCTTGG
CGTTCATTTCAGGAGAAAAGTGTTGAATTTCAGGTGATCCTTCTTGAATA
TGGCTTTGAATTCTTAGTTTGTCTTCTTCAAAATTTGCCGGAACCATTCT
ATTAAACTTGGATGAAAGTTTGGGTAGTTTTTCTTGAGCTCTCAAAATTT
TATTaccataaaatgtttttaattgttccGATTCCTTTCGCAGTAGGAAA
TCTTCTTCTTCCTTCTTcctcttttcattttcttgatTCTTCTTTAAAAG
ACTTTCCACCGAGGTTAACGTATTCAAAAATCTTGTTTTAAAATCTAGAG
ACTTTTCATCACGCAATACAGATCCAGAATTGACAACTTTAACTTCTTTT
GAATTTGAAGCATTACCAACTTGTAGAATAGTAAAtccaacaaaaattat
tttcaatattataCACTCCATTTCGTTGAACTTGTAATGTAGAGCTGTCT
ATCTTTATGTTATTTATCTTTCAAATGATTGAGTACTAAAAGTTCTCTAA
CTTCTTGATTTTAACATTGCCTTGCTCTATAATCACACCA Run BLAST on NCBI protein sequence of TCONS_00016073-protein >TCONS_00016073-protein ID=TCONS_00016073-protein|Name=TCONS_00016073-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MECIILKIIFVGFTILQVGNASNSKEVKVVNSGSVLRDEKSLDFKTRFLN
TLTSVESLLKKNQENEKRKKEEEDFLLRKESEQLKTFYGNKILRAQEKLP
KLSSKFNRMVPANFEEDKLRIQSHIQEGSPEIQHFSPEMNAKRVVDSGAS
LYCRYQQVTRYRTYVYHGQVYHYPYYETVKNCEGW Run BLAST on NCBI transcript from alignment at sc0000225:240511..241350 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016073 ID=TCONS_00016073|Name=TCONS_00016073|organism=Clytia hemisphaerica|type=transcript|length=840bp|location=Sequence derived from alignment at sc0000225:240511..241350 (Clytia hemisphaerica)
TGGTGTGATTATAGAGCAAGGCAATGTTAAAATCAAGAAGTTAGAGAACT
TTTAGTACTCAATCATTTGAAAGATAAATAACATAAAGATAGACAGCTCT
ACATTACAAGTTCAACGAAATGGAGTGtataatattgaaaataatttttg
ttggaTTTACTATTCTACAAGTTGGTAATGCTTCAAATTCAAAAGAAGTT
AAAGTTGTCAATTCTGGATCTGTATTGCGTGATGAAAAGTCTCTAGATTT
TAAAACAAGATTTTTGAATACGTTAACCTCGGTGGAAAGTCTTTTAAAGA
AGAatcaagaaaatgaaaagaggAAGAAGGAAGAAGAAGATTTCCTACTG
CGAAAGGAATCggaacaattaaaaacattttatggtAATAAAATTTTGAG
AGCTCAAGAAAAACTACCCAAACTTTCATCCAAGTTTAATAGAATGGTTC
CGGCAAATTTTGAAGAAGACAAACTAAGAATTCAAAGCCATATTCAAGAA
GGATCACCTGAAATTCAACACTTTTCTCCTGAAATGAACGCCAAGCGGGT
TGTTGACAGCGGTGCAAGTTTGTATTGTCGTTATCAACAAGTGACACGTT
ATAGAACTTATGTTTATCATGGGCAAGTGTATCACTACCCTTATTATGAA
ACAGTTAAAAATTGTGAAGGGTGGTAGATATATTAAAAATCTGAGTATAG
ATTTGAAATAAACAAGACTCAAATGTTTTAAGTCAGATATTATGATTTTT
GAACAAGTAGaaatattctttattttatttcattttcattttccaatttt
ccaataATCTTTTATCTTTGGATTATTTCTCCTTGGAAAT Coding sequence (CDS) from alignment at sc0000225:240511..241350 >TCONS_00016073 ID=TCONS_00016073|Name=TCONS_00016073|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at sc0000225:240511..241350 (Clytia hemisphaerica)
ATGGAGTGtataatattgaaaataatttttgttggaTTTACTATTCTACA
AGTTGGTAATGCTTCAAATTCAAAAGAAGTTAAAGTTGTCAATTCTGGAT
CTGTATTGCGTGATGAAAAGTCTCTAGATTTTAAAACAAGATTTTTGAAT
ACGTTAACCTCGGTGGAAAGTCTTTTAAAGAAGAatcaagaaaatgaaaa
gaggAAGAAGGAAGAAGAAGATTTCCTACTGCGAAAGGAATCggaacaat
taaaaacattttatggtAATAAAATTTTGAGAGCTCAAGAAAAACTACCC
AAACTTTCATCCAAGTTTAATAGAATGGTTCCGGCAAATTTTGAAGAAGA
CAAACTAAGAATTCAAAGCCATATTCAAGAAGGATCACCTGAAATTCAAC
ACTTTTCTCCTGAAATGAACGCCAAGCGGGTTGTTGACAGCGGTGCAAGT
TTGTATTGTCGTTATCAACAAGTGACACGTTATAGAACTTATGTTTATCA
TGGGCAAGTGTATCACTACCCTTATTATGAAACAGTTAAAAATTGTGAAG
GGTGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016073-exon-sc0000225-1491911889:240511..241350 | TCONS_00016073-exon-sc0000225-1491911889:240511..241350 | Clytia hemisphaerica | exon |
| TCONS_00016073-exon-sc0000225-1510915933:240511..241350 | TCONS_00016073-exon-sc0000225-1510915933:240511..241350 | Clytia hemisphaerica | exon |
| TCONS_00016073-exon-sc0000225-1575043694:240511..241350 | TCONS_00016073-exon-sc0000225-1575043694:240511..241350 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000225 | supercontig | sc0000225:240511..241350 . |
Blast
The following BLAST results are available for this feature:
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