TCONS_00016076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016076
Unique NameTCONS_00016076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016076 ID=TCONS_00016076|Name=TCONS_00016076|organism=Clytia hemisphaerica|type=transcript|length=481bp
aCTTTGAACCGTAAATTgcaagaaattgagtaattttagacccagcattg
ttcttaaattggtcttattctTTGGCAATTTTGAGTATAAACCCCGTATA
AACTATTGGTCACCGAAACTATTGGTCACTACAAACAAAGCCTCATTTCA
TTACGCCTATCaaatgttcttatgaaagaaaaaagtgttagttcgaaata
tattggaatCTTTGCATCTTTGGGTCTTTCTTTGGTTGTCTTGAGTGAGA
ATTATGATTTCAGCATTTTTCATCGGATATTTCAAATTACTTGGGATTTG
GATTTGCGAAGAGTTTAGTTGCTTCAAGGCTCTATTCGAAGCCCTATTCT
AAGCtctatttaatattttttttcatcacGTTCTTTTTACAAGGCTAgct
caaataaaaataatttggaaatagtaagaaatatctaaaaattgtCTCAG
AAGTTCATTCACCTATAGGTGTGTCATAAGG
Run BLAST on NCBI

transcript from alignment at sc0000225:289482..289962

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016076 ID=TCONS_00016076|Name=TCONS_00016076|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at sc0000225:289482..289962 (Clytia hemisphaerica)
CCTTATGACACACCTATAGGTGAATGAACTTCTGAGacaatttttagata
tttcttactatttccaaattatttttatttgagcTAGCCTTGTAAAAAGA
ACgtgatgaaaaaaaatattaaatagaGCTTAGAATAGGGCTTCGAATAG
AGCCTTGAAGCAACTAAACTCTTCGCAAATCCAAATCCCAAGTAATTTGA
AATATCCGATGAAAAATGCTGAAATCATAATTCTCACTCAAGACAACCAA
AGAAAGACCCAAAGATGCAAAGattccaatatatttcgaactaacacttt
tttctttcataagaacatttGATAGGCGTAATGAAATGAGGCTTTGTTTG
TAGTGACCAATAGTTTCGGTGACCAATAGTTTATACGGGGTTTATACTCA
AAATTGCCAAagaataagaccaatttaagaacaatgctgggtctaaaatt
actcaatttcttgcAATTTACGGTTCAAAGt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008986XLOC_008986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016076-exon-sc0000225-1491911889:289482..289962TCONS_00016076-exon-sc0000225-1491911889:289482..289962Clytia hemisphaericaexon
TCONS_00016076-exon-sc0000225-1510915933:289482..289962TCONS_00016076-exon-sc0000225-1510915933:289482..289962Clytia hemisphaericaexon
TCONS_00016076-exon-sc0000225-1575043694:289482..289962TCONS_00016076-exon-sc0000225-1575043694:289482..289962Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000225supercontigsc0000225:289482..289962 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.147683	0.433454	0	0	0	0	0	0	0	0	0	0	0	0	0.979155	1.60576	0	0	4.79218	3.69072	0.448655	0.679821	0	0.749894	1.43079	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top