TCONS_00016088 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016088
Unique Name	TCONS_00016088
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2012

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000226:44100..51371+

transcript sequence

>TCONS_00016088 ID=TCONS_00016088|Name=TCONS_00016088|organism=Clytia hemisphaerica|type=transcript|length=2012bp
CTCTATTGCAATTCTGGGATCGAATTAAAGTATTACATTTAGCGATTAGT
GATGCGTTTTTGAACATTTACGTGGCAAAAATTCTGCAAGATCACAATGT
GTTATTTCATGGACTTGGAAGATCATTTTAAGTCATACCGGGTGGCCCAA
AAAAAACTTAACATGATTTCGAAAGTGATTTATTTGACGTATGTTAGCCG
TAAGAGTGCGAAACTTTCAGGATGTCTTTACAATTCTAATTTAGATCTTT
GTGTAAAATTTCTTGAAGATATGAGATGCCAAGAAAGAGTTATGCTTTAA
GGAGTATTGGAAGGTCTAAAACCAAacccgcagaaaaataaaaaattgac
gtcagttttttgtttttatttctttttatgaaaagatgtttttcatttca
tcgcgAAAATCTAATACAAGTTGAAAAGAAAGATAACACAATTAATTTAC
ACGAGCATAAATATTCAGATAGTCATTTCTTTATCCGAAAAGGGTTTTGA
TTGAACCACCATCCTTCGATTCTACAGCTTGGAGACGAGGAAGGAATTGC
TTTAAAGCCTTTCTGATTTCTTTCAGGTCGGTCGCACATTCACCCCAAAC
TTCTTTGATGCGAGCTTCCAACTCCTCTACTGACTGAAATGGGGTGCAAT
GCCGACCTTCAAAGACTCTTTCTTGAACTCGATCCCAAAAATAAAAGTCT
AAGGGGTTGCAATCAGGCGAACTCGGCGGCCAGTCCGTGTTTTTCACAAA
GCGTGACTTTAACTTCTCTTTAAGGAATTTTTGAATCTTGTTTGCACGAT
GAGACGGTGCGCTATCTTGAACAAACGTGAAATCGTTGTGTGGGTACATT
GTCTCGGCAGCAGGGATTAACTTGTCTTTCAGATGTTTTAGATAAGATTC
GGCATTCACTTTGATTTTGCTACCACCAACAAAAAAAGGCTGGCTCACTC
CTTTCCAAGAAAAAATCGCGGAAACCATCACCTTTACCGATTGNCCGGTA
GTTTTACTAAATTCTAAATGATATGATTAAATCATTGCCCCCTGCTTACT
AAACTACTTGGGAATTTCCCAGAGGAAAAACTATATGTAATTCAGTgtaa
ttcattttcttttatagTGTCTATGAACTAAACTAATAAGTAAGAATATA
CATCTTTGTTAGACCAGTAAATAATATACAATGGCATCTTGGGATAGTGA
AGATTTTGATGTTGACACCAACGAACCAGCAGTAGTTGGTGTTTCCGATA
AATGGGAAGGCGAAGATGAGGATGATGATATTGCTGACAGCTGGGATGCT
ttagatgaagatgaagataaagaaaaaccaaaaaCTACAACGCagccaaa
gaaaaagaaaactttggatgaaaagataaaagaaagagaagaaaaacgtA
GACTGGAAAAATTAGCCAGAGAAGAGGAGCGGAAACGTGAAGAAGAAGCA
AATAGAGAATTAACACCAGAAGAACAAATGGCTGAAAAACTAAGGCAACA
AAGgCTGCAAGAAGAATCAGATTTAGAATTAGCAAAGGAAGCGTTTGGAA
CCACAGAAGACATGCCAGGGGTTAAAACGATAGATAAATTTGTACCTGAT
AATAGGGAAGAATTTAATGAACTATCACAAATGCTTGTCACAAAATTACA
AGATCTAGAGAATAAATCGGAATATCCAGGATTTTTGGAAACACTATTTC
GAGATTGTTGTGCATCGGTTGATGCTGAAACTATAAAAAAGATCGCTTCA
ACGTTAAATGTATTGGCAtccgaaaaacaaaaattatccaAGCCGAAAGC
AGGTAAGAAGAAAGGTGCTAAAACGACGAACACACTGAAAGCCGGCAAAG
CATCCACGAAATCCGACATGTCGGGCTTTAATGATGACTATTATGACGAA
TATGAAGATTTTATGTAATGTTTTATGTTTCTTATGAATGTGTTATATGT
TACGTAATGTATGTAATATGTGTAAGAACCAATGTCATATTAAAAAAGCA
TGCGTTTGAATT

Run BLAST on NCBI

transcript from alignment at sc0000226:44100..51371+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016088 ID=TCONS_00016088|Name=TCONS_00016088|organism=Clytia hemisphaerica|type=transcript|length=7272bp|location=Sequence derived from alignment at sc0000226:44100..51371+ (Clytia hemisphaerica)
CTCTATTGCAATTCTGGGATCGAATTAAAGTATTACATTTAGCGATTAGT
GATGCGTTTTTGAACATTTACGTGGCAAAAATTCTGCAAGATCACAATGT
GTTATTTCATGGACTTGGAAGATCATTTTAAGTCATACCGGGTGGCCCAA
AAAAAACTTAACATGATTTCGAAAGTGATTTATTTGACGTATGTTAGCCG
TAAGAGTGCGAAACTTTCAGGATGTCTTTACAATTCTAATTTAGATCTTT
GTGTAAAATTTCTTGAAGATATGAGATGCCAAGAAAGAGTTATGCTTTAA
GGAGTATTGGAAGGTCTAAAACCAAacccgcagaaaaataaaaaattgac
gtcagttttttgtttttatttctttttatgaaaagatgtttttcatttca
tcgcgAAAATCTAATACAAGTTGAAAAGAAAGATAACACAATTAATTTAC
ACGAGCATAAATATTCAGATAGTCATTTCTTTATCCGAAAAGGGTTTTGA
TTGAACCACCATCCTTCGATTCTACAGCTTGGAGACGAGGAAGGAATTGC
TTTAAAGCCTTTCTGATTTCTTTCAGGTCGGTCGCACATTCACCCCAAAC
TTCTTTGATGCGAGCTTCCAACTCCTCTACTGACTGAAATGGGGTGCAAT
GCCGACCTTCAAAGACTCTTTCTTGAACTCGATCCCAAAAATAAAAGTCT
AAGGGGTTGCAATCAGGCGAACTCGGCGGCCAGTCCGTGTTTTTCACAAA
GCGTGACTTTAACTTCTCTTTAAGGAATTTTTGAATCTTGTTTGCACGAT
GAGACGGTGCGCTATCTTGAACAAACGTGAAATCGTTGTGTGGGTACATT
GTCTCGGCAGCAGGGATTAACTTGTCTTTCAGATGTTTTAGATAAGATTC
GGCATTCACTTTGATTTTGCTACCACCAACAAAAAAAGGCTGGCTCACTC
CTTTCCAAGAAAAAATCGCGGAAACCATCACCTTTACCGATTGNCCGGTA
GTTTTACTAAATTCTAAATGATATGATTAAATCATTGCCCCCTGCTTACT
AAACTACTTGGGAATTTCCCAGAGGAAAAACTATATGTAATTCAGTgtaa
ttcattttcttttatagTGTCTATGAACTAAACTAATAAGTAAGAATATA
CATCTTTGTTAGACCAGTAAATAATATACAATGGCATCTTGGGGTAAGTA
TATATTAATACAAGTATATGAAAGTTCTCTCAGAAGATCAAGGTTTGTTA
CCTTGGTCCTATAAATTCAGGATAATCTTAAAGCCAACTAAATATGAGTT
GAACTGGGCTAAATTCTCAAagagataatcagatggttcGAGATCGTTTG
CCTGTACATTCCTTTCATAGTCCTGAGCCAAACTTacaaatctttttgtt
tagggTTTCACAAAAGTTTAGATATtgcaatttgaaatataaaataagTT
CATACAGCAGGATTGTTACTTCAAACTTCTAGAATCGTGTATACAACTTG
AATATATGTCAACTTGGAAAAATGATTCATAGATAAAAgatttggaattt
tttctcAGGAACATTGATGAAATCTTCATGCGCATTTCTCAAACTGTCTG
ATTATTATGATAGATTCTCCCAACTTGATTCAATCAGGGCTGCTCTCTGG
GCATAGGTTGGTGCTATAAAATGATGTATGGGTGTAGGAGATACCAAGTT
GCACTAACGTCTAGTTTTTGAAAGGTAACACCTTCCTTTGGAACTGTCCT
TGATGATCAAAGTAATCACATTTCACACATTCTTTTAAATATAGATAGTG
AAGATTTTGATGTTGACACCAACGAACCAGCAGTAGTTGGTGTTTCCGAT
AAATGGGAAGGCGAAGATGAGGATGATGATATTGCTGTAAGGAAGTGATG
TATATCAATGTTATATTAGTGACTGTTTTTAGAGAcgttctgtccaacta
tcttctttcaggagatttgagtggcagagcagcatatgcatttcgcaATA
ATGATTTCTgcccttaagtggataaattttggctgggattaaatttggcg
aatttggcgaatttggccaaaattcgccaaattaaatcctcgccaaaatt
tccaaattcggcaattcgccaaattaaatccccgNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNat
ccccgccaaatttaacaaaaatagaattatgtgaaaaatcacaacttttt
agtacatttttgagtaattttcacccatttcagtgtgacaaaatttccca
ttcgccaaattaaatcctcgccaaattttacgaaattgatctatcgccaa
attaaatccccgccaaaaatcgtattttggccaatcgccaaattaaatcc
acgccaaaatttatccacttaaggtaactCAAATCAATCTCCTCCCATGA
TTcatattttgtaaaatgttATAGACTGAACAGTATTGGTCGTCAAAATA
TGTGGAAGAATTAGTCATCTTTCATGCgactttttaaattgtttttgtta
CTTCTGATTAAACCACATGTTTCAAtatgttggatcaaatgtttaATAAT
TTCTCATTGTTCTTTTAGGACAGCTGGGATGCTttagatgaagatgaaga
taaagaaaaaccaaaaagtaGGATTATCAAGATATTTTCATTTCTCAAAA
GAAATATCAACTTTGCTAACTTTTTCCTGGATTATTCTGAAAGATACCCA
TTTTACGGCCTATCTGACTGAGAATTTCATCATTAAATTAATCatcaata
aatgaaaaaatgatttgtccaaattttatcaTTACTTCAAAGAAAATACA
AGATGTTCGAAAAATTCTGGTTACTTTCTTCAAGGAATTGTGTTAATATA
TGATGTATTGTTTTCTCAATCGTTTAGCTACAACGCagccaaagaaaaag
aaaactttggatgaaaagataaaagaaagagaagaaaaacgtAGACTGGA
AAAATTAGCCAGAGAAGAGGTgaggttttttaaaaataagtacGGGCGGG
TAACTTTTTCATTTATCTTAGCTGCACCTGATGTATTGTTACCAGTTTTT
AGATAATTGATAAAAGTTGAATGTATCATAAAGTTCGAACACTATTTTTC
CTGTATTTTAAGATCAGGTCAGCAACATCATAAATTCTTATATAAAGCTG
ATGAACTTTGAACAATAGTTTATAACTAAATAGTTAACTTGTGTTAGGTT
GGCTCAAAAAACCTTAAAGAAACTTGTTTACCATTTCAACTCAGGGTTTG
ATACAATCAATATTTCTAGAGTCTGTTTAAACTTAAATATTTTGGGCTAT
AAAATGTTTGTTTCAATGTCATGTTGTTTTTAGGAGCGGAAACGTGAAGA
AGAAGCAAATAGAGAATTAACACCAGAAGAACAAATGGCTGAAAAACTAA
GGCAACAAAGGTAACTTATTACTTAACATgacacccccttttcacagacc
cggtaggattttttcaggcAGTGGAAGTAAAATTAATTGACCAAAACTCA
ATACATAATATTTGCATTATGCTAAAGTAAGTCCGGAAGCAAAATTACCT
TTGTGAGTAGTAACTATGGGTTTTTAATTTACTTTCTCATTATTATGGTC
CATTGGGACTTCAAAACAAGTTTTTGCCAACTtggcaaagctggggaaat
TTTGGTGGAGTAAGGTCATTTTTGCCTAAAGACCCTTGAAAAGTCAATTA
TTGAAGTTTCTTATTGACAAAAGCAGATTGTACCCTCTggtagagcttga
agagtagatctcaaAAAAGGGTtcatttgtctcatttagtCAACTAAAAA
TCGCCTGGAAATAAATGATACGTCTGTAAAAATGCAAATTTttatgctga
catcagcatttttgacgaaaaaagttACTTCCAACAGACACATCTCAAAG
AGTACTATCAATCAGAGGTAAAATTTATAGGGTTTCCATGGCTaaatttt
gagatatttgagttttgAAATTTGCTGACTCAGTGCTTTTCGCGTTTTTG
GCCCTTTCCTGATGAAATCGAAATTATTCTCTgtaaaaagagttttttta
atAGCTCTATAGCAAAGAATTTGGAATTCATATAGATATCAGGCTTGTTT
TTAGACAGCCTATAAATGTTCCTCCGAAAATGGTCCAGTTACTTGCTCTT
TCTGGACCTTtacaaaattgtaaattatTACTCTATatttatgatgattt
ttttatcttttcaggCTGCAAGAAGAATCAGATTTAGAATTAGCAAAGGA
AGCGTTTGGTATGGtatcttcttaacttttttgatttacttttaattttt
agatAAAGATGAAATTACAAGTGTATAACAATAACCTAACTTTCCTTGTG
AATTTTCGaaggttttgaattttaaactaAGCGAAATCGAATACCAAGTA
TTTGAAATTctgttgttttgttttgcaGGAACCACAGAAGACATGCCAGG
GGTTAAAACGATAGATAAATTTGTACCTGATAATAGGGAAGAATTTAATG
AACTATCACAAATGCTTGTCACAAAATTACAAGATCTAGAGGTATGGGAA
CTAATTTTATTACATGTAATGTGTTTTTACTTTAGATAAATCTCATAGTA
TACAAACTACTGCTTATTTTTTGAAGCACTTTTGTTGTTGGACTTTGTTT
TATGTTCAATTTAGCAATTGGAAAGGCCTCTCCTGCTTAATGTTCATTAC
TTAaggtttttctaagattgacTTTCGTATACTtggaatttctttgaaat
aatttttctgttGCGCTGGCTTTTTGTTCATACGAAAGCAAAAGATCATG
TACGAATTTGATCGAAAAtgtttacacgcttttttttaagaaacatgtta
ttttctcattctcagcctcagcatgtttcttagatgtttcttagattttt
aggcattctgagcctcatgtttcttaaaagtgtgtttcttaaaaaaaaac
gtgtagtgcaTCATTTAGAGAAAACTGAAGCTGTCAACCTCCTAAACATG
AATGAATATTTCAAATTCAGCTAGAATTCTCTGTATTGTTGTCAACAAAT
TATAGACATGCTAATTTCATCCTTTGCTTTCTTTTCTACAGAATAAATCG
GAATATCCAGGATTTTTGGAAACACTATTTCGAGATTGTTGTGCATCGGG
TAATTTCTTGAATTCACTAAACCAGATTAAACAGAGATTTTCATTACTCT
TTGTAAAGTTGAACATGTTCCTTCTTTTGACAGCATgatgttttctttct
ttaacaTTAGACTCGTTAgaatttttaattgaatttcttttatcTATTTT
AGCAACCGAATCTTAAGATTGCAATGATATTTCCCATAGCGTTTGAGATA
CTGATTTTACTTGATAAATAGTCAAtaaaattttctagaaattatcaaat
ttaaaattttttttcttcttctacaGTTGAAGCAGAAACTATAAAAAAGA
TCGCTTCAANAGTTGACCTACTCCataatttgttatatttttatttgttt
gaaagCAGTTAGTGGAAAAAACCTGGTAAAGACaggtaaaaacgtaaaaa
tacaCCTCATAAAACCTCCTTTGGGTGTGAAATTCACCTGGAATGCACCG
TAGAGAGACGGATCCTTATTTTGGGGGGTGGTATATATATTGAGCAAGGT
CAAAGACAGTTAGTACACGGTGTACTAANNNNNNNNNNNNNNNNNNNNNN
NNNNNACACGGTGTACTAAGTGACAGGGGGTGGTGGTGGGGtacagattt
ttccaaaaatcagttagtacacataGTGttctgtactaactgcttgcccc
ccccTGGAATTCTCTGTATTGTTGTCAACAAATTATAGACATGCAAATTT
CAtcctttctctctttttttacaGAATAAATCGGAATATCCAGGATTTTT
GGAAACACTATTTCGAGATTGTTGTGCATCGGGTAACTTCTTGAATTCAC
TAAACCAGATTAAACAGAGATTTTCATTACTCTTTGTAAAGTTGAACATA
TTCCTTCTTTTGACAGCATaatgttttctttctttaagattagacttttt
tattaaatctcctttatttattttagcaaTCGAATCTTAAGCATTACAAT
GATATTTCCCATGGCGTTTGAGATACTGATTTTTTACTTGATGAAtagtc
aataaaaatttttagaaattatcaaatttacaatttctttTATTCTTCTA
CAGTTGATGCTGAAACTATAAAAAAGATCGCTTCAACGTTAAATGTATTG
GCAtccgaaaaacaaaaattatccaAGGTAAGTAATTAGAAATATATCTT
TCAACAGCTTTGTGTTCTTTCATTTAAGAAAAATGTGTAAACCTTTGAGG
TTGAGatctgttttgtttacaaaagacaGCCATGAGCATTCTATCATCGG
ATCTTAACTCCTGACTTAACCTTTTTATTTTGCAGCTACATGGGCAGACA
TTTCTATCCTTTTTAAGTTCGGTTTATTGCCTTTTAGCAATGCGTTCAAC
TGCGAACCATATTTAAAAGCTTTGCTACTAATTGTATCAGGCACTCCATA
TCACATGCCTAAATGCCAAAATGAATTCCGCAGGCCTTCCTCAAAATGTA
GACATGTGGTCAATCAAACCCTTACCAAACCGACAATCACGCGCCTGGAT
TTTTTTAAGAGGAAAGCTTGTTGTGGGCTCAGATGAGATGAAGTTTTTAT
atgatactttaataattggtcatttgaagtaatagaaatgacgcgttctt
tagaaaaagtaataagattcttttattactgGTGAACGACCAACCAAAGT
TTGTAAAAACTCCACATCGTCCCTGTGGGCTACATAAAAATAATAGTCCT
CAATTTAATTGAATGACTATTTCagttaaaatatattttgcgttaATTCT
CTCTAGTTAAGATCATGGTCGATAATTACATTTCTTACTTTCTCCCTCGT
AGCCGAAAGCAGGTAAGAAGAAAGGTGCTAAAACGACGAACACACTGAAA
GCCGGCAAAGCATCCACGAAATCCGACATGTCGGGCTTTAATGATGACTA
TTATGACGAATATGAAGATTTTATGTAATGTTTTATGTTTCTTATGAATG
TGTTATATGTTACGTAATGTATGTAATATGTGTAAGAACCAATGTCATAT
TAAAAAAGCATGCGTTTGAATT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008998	XLOC_008998	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000226	supercontig	sc0000226:44100..51371 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.4817	15.8163	11.2782	12.5949	9.84503	7.01114	12.8981	13.9923	12.7929	11.4554	9.93801	7.82617	5.7101	5.27947	9.24901	7.77885	10.9104	9.87532	3.20155	5.48632	6.79893	6.02013	10.819	10.124	11.4304	10.5896	4.58434	3.94233	8.43366	6.9053

Blast

[Close]

BLAST of TCONS_00016088 vs. Swiss-Prot (Human)
Match: EIF3J (Eukaryotic translation initiation factor 3 subunit J OS=Homo sapiens GN=EIF3J PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.293e-20
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 2

Query: 1460 LTPEEQMAEKLRQQRLQEESDLELAKEAFGTTEDMPGVKTIDKFVPDNREEFNELSQMLVTKLQDLENKSEYPGFLETLFRDCCASVDAETIKKIASTLNVL 1765
            LTPEEQ+A+KLR ++LQEESDLELAKE FG    + G   ID   P +R++F E  ++L  K+   E    Y  FLE L RD C S++ + +KKI ++L VL
Sbjct:  108 LTPEEQLADKLRLKKLQEESDLELAKETFGVNNAVYG---IDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITNSLTVL 206

The following BLAST results are available for this feature:

BLAST of TCONS_00016088 vs. Swiss-Prot (Human)

BLAST of TCONS_00016088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EIF3J	1.293e-20	48.04	Eukaryotic translation initiation factor 3 subunit...	[more]

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TCONS_00016088 (transcript) - C. hemisphaerica