TCONS_00016102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016102
Unique NameTCONS_00016102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4009

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016102 ID=TCONS_00016102|Name=TCONS_00016102|organism=Clytia hemisphaerica|type=transcript|length=4009bp
AATTCAAACAAATAGACAGGAAGAATATTTTATCGTTGTAAAGATATTGG
AGAGTGGAGAGTAGAATCTATTTATCAACATGGACGCGATGATGTGTCAA
ATGGATGACTTGTCAAAAGTTAATAAACAGGAAAAaatGCTGAATAACCG
TAAACAGAAATCAAGGGACGCGGCTCGGAACCGCCGAAGTAAAGAAAATG
ACCAGTATGAAGCACTTGCTAAATTGTTGCCGTTACCAGAATCCATCTCA
TCACAGCTGGATAAAGCATCCATTATTCGTTTGACAATCGGATTTTTGAA
GTACAAAGATCTTATTGGCACTGGAGGAGGGATGCAACACAACGGATATC
GCCGTAATATGATGCTCATGTCTCATAATGGCCACAACAATAATCATCAT
CCGTATCATCCTCAACGTGCCGTACAGAAGACGTCCGTCTATTCCGACAT
CGAACAACGTATTGGTAAACATATTGAACACGCATTGGATGGTTTTATGT
TAACAGTTTCGGACAATGGACATTTCATTTATGTGTCGGACACTATCGAA
CAATTCCTTGGTTTGAGACAGATCGATCTGATTGGTACAAGTGCTTATGA
CGTCATCCATCCTGAAGACCATCAAACCTTTATGGAATTATTGTGTtcga
cttttcaaaaaagtaatcAACAATACAAGATGAATAATATGATGGACTTC
GATGCGATGACCTTTATGGAAATGGAACGTAAAAGTAAACAAGGTTTCGT
TTCACTTTTCATCCGTTTCAAGTGCACATTGGCTAAGAAGGGAGCCTCGG
TTTCAAAGTCTGCTGGATACAAGGTTATCCATATATCAGGACAAATGATC
CCATTCAAAAACTTGGACCACAAAGGTGAACAAATGTTTGCACTTGTAGC
CACTGGCCACGCTCTACCGCCACCCACCATCTGCGAGTTAAAGCTGGACA
CCAAAGTGTTTGTCAGTCGTGTCAGCATGGACTTAAAAATTGTGTTCTGC
GAGGGAAAgatCCGCAAGTATATGAATTTTACAGCACAAGATATCGTTGG
AATGCGTGCCTACGATTTCTACCATTTGAAAGATAGTCATATCGTTCAAG
ACGCACATAATGATTGTTTAAAGAGTGGTAAATGTCGTAGTTTGGCATAC
CGTTGGATGAACAAGACCGGAGGATGGGTGTGGATGCAAACTGTCGGTAC
GGTCATCTCACGGAAAACCGCCAAAGGGGAAGAAAATCAAATCCTCTGCG
TCAACTACATATCAAGTGATGTTGAGCACGAAGATGAGATGATGCATTCC
attcaattgaaattcaaagaCATGGGTATCACCAACAAGGAAGATGACAT
GTCTGATTTTGGTAACGATGCATCCACCGGACCAGCTGATATCACTTCGG
ATGATGTCCGAAAATCGTACGCTACTCCCTCTACTGAAGAAGCAGCAGAT
AAAGAAAGTTACTTGAAGTCTATCGACTACCATAACATGACGAACGGACA
TCGTGCGATCGTTTCTGACGAACCTGTCAAACCAAATCCTGCTGTTTTCA
CCCACACTCCTAACCTGCCACCAGCGCCTATCCCCGCGCGACCTCTGGTC
GATGAAGAAACAAAACGGCGACAAGCTAACATCATGGGTGACCTACAACT
AGCTGATATGCTCAGCGAAACTGGTCCCCTACCACAGATTGATAACCCGT
TCCCCGACAGTCCTGAATCGTATGATATGAGCCATTGTGATATTATATCA
TTACAAGGCGCACCACAACTACcaaacgaaaacaaaaatttcggCTCGCG
GGAGGTTTTCTCTATGAGCAACACCATGAATTTCCACCACGCGGATAACA
ATaattctttccaaattcaacaaacaTCAACTTCTATCTACATGGAGCAA
CAGATCTCCCCACCTCTTCCACGACAGACACAACAACAAGCGAACAACAG
TATGTCTCCACAGTATCAACAGCCGCACGATCCCATCGTCATGAATGAAG
TCAATACGTTTTTCAACGAGATGTCGACAGCTTCAAACAATTCTCCTTAC
CCacaacatcaacaacaacaacaacaacctatCCAAAATAATGCAAATTC
TCCACAATCAAATGATTTCTACAATCAAGATCTTTCACCCAAATACGAAA
CCCCGTCTCCAGAATATCCCGCCCAAACGAATGGTGGCGGTAATTGCTCT
CCCCCTTACATGGCGCCCGTTGGAAAAGAATCGCCTCCCTATTTAGGGCA
GTCAATGAATAGTCCGCCCATGTTCAACAATAACCAGCAGACAAATGCAC
CTCCACCCTATACTAGCTCACAATATAACGCCCCACCTCAATATAACACC
CAAACGGCGCCCAGTAACAGAATGCATTTCAACCCACAAATGGAGAGTCC
TTTGgaattcaacaatttcaatacTATCATCAAAACAGAACCACCCAACT
ATATGGGATGTGGCGCTCAATATAGGAGTAATAATATGATCAATAGGGGT
AATGGTATGACCCAGCAACAGCCACTTCAAACTCAATGTATACcccagca
acaacaacaacgacagAATCAAATGAACAATATACCACAATGTCAAGGTG
GTCATTTCGATACCAATCTCCCCAACGGTGGCGGTGTACTGAACCAAGGA
CAATTCAATCCAGATATCCCTCCTATAGAGGTGCTTGATAATTTGGACGA
TATTGAAGATATAATTTCTTCCTGTATAGAACAAGATGAAATCCAAAATC
AGGACTTTCAACAAAGGTTATTGATTCAACAACAGCAGGAGCAACAATTG
CAACAACAAGCTTTTGTTGAACAACAAATGAACTTTCAGAACCAACAACA
AAACGGACAATTACCATATAATGCTCCTTTGAGGTGTAATACAACGATAC
CAAACAAGTTTGGTGGCTATAATAACACTAATTCCATattctaaaaaaag
aaatcttttactctttctttgctttgaaaaaattcacaacttctaatatt
ttttaatgttttagcAATCTGCCATTATTAAAACGAAAAATATCCCAGCC
GCTTTCCTATAACTCGAATATTTTTTCGCCAGCGTTTCAAAGGTTTTTAT
GAACAACTCGTAACTCTTCAACTCGATATCTTTTAAGATTGAACAATATT
ATATTCAAGTTATAGGGAGCTTAATCTAAtgtattttataaattttattt
gcttataTTGAGATAACAGCCTTATTTTATCAATCTGTGCACTTATACTT
TATCGTGaaattcttttgatattttctttatttttggttCGGGcttttct
gttttatttttgttagtttttcatttgtttttcataaattttagtTTTGT
CGGTTTATATTAAACtatttattattatattttatacTTGAATATAAACC
AACACCTATTTACTACTTTCGATGCTGAAGATATTTTTGTCGATGTAAGC
GAGCACCACGGAAAGTACAATGTATTTTCCGAAGCTTTCTCGGCTCTAAT
TTGTTCCATTTTGTTCTGTTCTTGTTTCTTTATATTAATTCTTAATTCTA
ACCAAATGGATTCGAGATGTTCCAGAAGACAATTTTAGCTCAATTTTGAG
AAGTTTGACGCCCTGGATTTCCCCTGATTTTTCGGGCAATTTTTGAGGTA
TACCTCATTGAATTTCGTCAAAACTTCAGAGACCTCCCCTggattttcta
actttttttctattttctctctCAAGGTTATTATATCATGCTTAAAAGCG
AAATAAATTtactgttttttataaaatttctgctgtgtaatttttatgtt
tatatttttttattgtttgcattcacactttttgtaaatattgaaaACTT
CCATCAATTATTTCTCCTCATTGTTCCCCCCTTGTTGTATATTATATTAT
CCACTGGGGAATAATATTACCCCATACTGTCTATCGATTATTTTTCAtat
attataaaataaaatgaaatgtaCAGTTATTCAATACCACAGCAATACTG
GAGTTCACC
Run BLAST on NCBI

transcript from alignment at sc0000226:318555..328048+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016102 ID=TCONS_00016102|Name=TCONS_00016102|organism=Clytia hemisphaerica|type=transcript|length=9494bp|location=Sequence derived from alignment at sc0000226:318555..328048+ (Clytia hemisphaerica)
AATTCAAACAAATAGACAGGAAGAATATTTTATCGTTGTAAAGATATTGG
AGAGTGGAGAGTAGAATCTATTTATCAACATGGACGCGATGATGTGTCAA
ATGGATGACTTGTCAAAAGTTAATAAACAGGAAAAGTAAGATGCCTACCA
ACTCTTACCTAAGACTAAGAAAAGTAGTATAGTCTATTTATCTGTATTAA
GCTCTTTCAGAAAAGTTTGCACATATGGGCCATGCATTTTTAACCCACTC
CCCATAATGATTGTAGGCCTAGTcttaaaatagaaatagaaagggAATAA
GTATTAACCATACTATCCCGTAACATTTATCGTATTACTGTATAACACCA
ATATTGTTAGTATAACATCATTATAAGCGGTAATCCAAGGTAAACAAAGA
TATTTCTCTTTATCGACTCGCACACCTACGCAAAACTAATGATTTCTACT
ATAGCTCAAATGTGAGGAGGTACTCATGTTTTGAGTATTTCAGTCAGTCA
TTGCCTCGTGTTTATAATCACCATTTTTTTGTTATCAGTAATCGTATAAT
GAaccctgtttttttttcttagaatGCTGAATAACCGTAAACAGAAATCA
AGGGACGCGGCTCGGAACCGCCGAAGTAAAGAAAATGACCAGTATGAAGC
ACTTGCTAAATTGTTGCCGTTACCAGAATCCATCTCATCACAGCTGGATA
AAGCATCCATTATTCGTTTGACAATCGGATTTTTGAAGTACAAAGATCTT
ATTGGCAGTAAGGATTTTAACTTTTTGTGGCAATTACAAGATTTTTATAT
CAAAACAATCGTATGAGAACACGAGACTCAGGTTTTGTTAAACTAAGAAT
AAATTAAGAATGACCTAAGCTTCGGACTTCAAAAGTTGCTAACATAAAGA
AATACGCTATTTTAGTTTCTTTTAAGCATAGAAAAGCTAAGTTAATATAA
CAATAAgaaccttttattttgaaaatcatgaaaataacaGCTAAATCTAT
TACGCTAAGCACTACActgaatgggcatttttacaATCGGGAAAACATTC
ACTTAGGATTAGGAAATGTGAAACACGATCAAGTGTCTGGTTTGGCAAAG
CACCCTACTGTTTTTCTTTCGTCTGGTTTTTATAtcacacaaaaacaaca
aatttcattttttattgcatCATAGAAATATAGTTCTGGTCCTTTTCTTA
ACTATAAAATTTGCAATCAAACAGATGGATTTGATCGAAAAGCAGGAGAG
GCTGGCGAGAGGGGCTAATAAAGTTTATTCAACGGTTTCCCAGGCAATAT
ATCATTTCAATGATAAGAGTCATAgctaaaatttaaacttttttactttG
TCTGAAATGGGACCCTTAAGTAaaacattttaacttttctccATGTTGTC
TCCTTTGTAGCTGGAGGAGGGATGCAACACAACGGATATCGCCGTAATAT
GATGCTCATGTCTCGTAAGCCATTTCAACCTTCTTTTTGTCCCTTCGCCG
TATAACATTGTCAAATCtctcatgttttttttcttactGTCAACATTGCG
TGCCAAGAGAAGTGTCTACATCAATGTACATATTGATTTATGGCTTAACT
GTTTATGACGTCAGTACTATATCGTCCACAAATCTCCCACAGTTCTACTG
TGGTACTTCAACTTCTCTATAACTTTTATTCCCAGTCaactaataaacgg
gggagaTAATTTTGTTAAAGGATGACTAATTGCCGGGAGTAGAGGTTGCA
CTTTTGAAAACACTAAAATAATATAGGCTGGAGTAGAGGCCCCTTTATTT
TGGCAACttatctttttcaaaacaacaattaaATGGGGGCGAATGAAAAA
GCCAGTTCCAGTTCTTATTTATCTTAACTGTGttaaacattgatttttca
ACGCTTTTTTAACAGATAATGGCCACAACAATAATCATCATCCGTATCAT
CCTCAACGTGCCGTACAGAAGACGTCCGTCTATTCCGACATCGAACAACG
TATTGGTAAACATATTGAACACGTGAGTAgcaaaagattgtttttttaCT
ACACCATCCCTACAAAGGTCTTAATCGACTCTCTGACTTGCTTAGATTTA
CCACTCAAAAGTCACAACTTTTTTGACCCAATAAAGAGAAAgcattgttt
catttttatttatttggaagtTTTGGATTTCTCTGTAGCTTAAATTAATT
AATGCAGGTTAAATTTTTGACGTAAAATACTTTTAGCTTTTGATACAATC
TATAATGGTAGAGTACAATAGGCTCTTACTCAAAGTAACATCTCAACACT
TTATTTAATCAACCTCTAAACTGATATTTTCCACAGGCATTGGATGGTTT
TATGTTAACAGTTTCGGACAATGGACATTTCATTTATGTGTCGGACACTA
TCGAACAATTCCTTGGTTTGAGACAGGTAAAACTACTACTCTGACCTTTC
CAGGGTTCCTGGACGTTTTATGCCATGAAAGAATTTGTAACAGCATGTTT
TGTGTGTCAAACCATTCTCCTGGTTTTTTTCAAAGAGCACTTCACTTATT
TTTTTACTCTTTAAAAAACCATTGTTGTTATCCTTTActccattttatga
aattttactATTCCCTATTCCTTGGATAAATAGTTCGTAGATCTGTCTTG
ACCGACACGAGAGGTCAGAGATAGACTATGGATAATGcagttttatcaaa
atatataaaaatatacGAATACAATTAACGTTTCCTTTTCATTGCAAAGT
TGCAAAAACAtcaatatcaaaatttctcatCAGCCATTACATGTTACTCC
ATAGATCGATCTGATTGGTACAAGTGCTTATGACGTCATCCATCCTGAAG
ACCATCAAACCTTTATGGAATTATTGTGTtcgacttttcaaaaaagtaat
cAACAATACAAGATGAATAATATGATGGACTTCGATGGTAAGCtaatata
ttatttttcatgGCCGggagagcattcgccttacaatccaatgattgtgg
gttcgacccctggtcaccgccaactcagtgAATGAGTAGCTTAGGTTGGG
TAATTTGATCTGGGTGGTAAGTCACTGAGTTGAAAGTAGGTTTAgcactc
cacctcagcatttgatctcccaggtctagtgCAAATAGAAAATGGGGTAG
TCTCCCTCACTCCTGGCTCCGCCATATTTTCCTAATATTGAACTTAAAAG
ATAAGCGAAGAGATCTTCTAACTTTTCAGAAGCAATCATAACAATTTTAG
TTCATTGAATCATACTTTGTAAGCTCACTGTCTTGACGTCTTTACTTGCT
TGGATTTCGGTTTGGCACAGGAACAAAAAAGAATTCCTGAGGAGAAAACA
AATTAAGTCAATAATTATATGAGTGATAGTTTCTAAAGAGGAAGTTCCAA
GAATTGATGATGTCGCTGGAGTATTTAGTCAAACTTGTTTAAGTTTATCA
CGTCACATATTTTTTCAATGCGTGGTATTTACAGGATCTgtcattgaaaa
aaatcacattACTCGAGTATATTTATTCCTTTGATTTCTTTAATATTAGA
GACAATCTAAAAACCATTAGGGTTGAGTTCCATGGACGAATAGTTATGGA
CATTTGAATGATGAACAGGAGTTCGATGCTTGGCTCAAATTCAGGCCTAG
AAACAATGGTGCTCATTGTCCAActcagaaaaatatttgaccGACCAatt
tgaaatcgttatttctgGTCCTACAAATTCAAtataaattcttatttctt
tctATTGCAGCGATGACCTTTATGGAAATGGAACGTAAAAGTAAACAAGG
TTTCGTTTCACTTTTCATCCGTTTCAAGTGCACATTGGCTAAGAAGGGAG
CCTCGGTTTCAAAGTCTGCTGGATACAAGGTGAAAACAAACTGCGATTCT
TTAATTAAAACCTCGTCTTTCTGAACATTAGATAAGATGTTAACGTGAAC
AATAATTGTTGgaactttttagaatttatgaTTTGCCATTGCAGACAGGT
GTGAATATCGAAAAAGgtataatgaaaattatggaaGCATCTGATGGTGT
CGTCTTGCCTCAAATCTTTGTCTAATAAATAAAAAGCACTGTAATACTCA
AAAGATAATTTCCTTCTCCCCTCTCACAGGTTATCCATATATCAGGACAA
ATGATCCCATTCAAAAACTTGGACCACAAAGGTGAACAAATGTTTGCACT
TGTAGCCACTGGCCACGCTCTACCGCCACCCACCATCTGCGAGTTAAAGC
TGGACACCAAAGTGTTTGTCAGTCGTGTCAGCATGGACTTAAAAATTGTG
TTCTGCGAGGGAAAGTAAGTTGATCTTTATCGCTCATTTCCTTCCGTTTA
ATGTAGCCAAAAAGTCTATACACTGATCAATCCTTAACCCTACGCGGTTG
GCTTTTAAGGGGTCTGGTAATGGATTTACAAGGAAATAACGTCAAAATGC
ATTGTTTTTATGAGAAAGTCAATGCAATCACTTCAGCTATTTTAACGTCA
TTCTTGCTAAAGGACTGAATTTAAGATATGATAAGAAAAACTGAATGACC
CAATTCTGTAACCTAACATTATCCTGTAACAATTTTTCCTTCATTACTAA
ATAACAcgtattataaacgactccaggcTACCTATCAATTTATTGCAGTG
GTCTTCTTCTTCCATTCCCTAGCGAATTTTAAGTCATTCCAGCTTCTACA
CTTTAATTGTTTACCCTTCTGATCTAGCTCTTTCTACAAAAATCAAACTA
TCGTTCAGCCATATAAAtcttagttgttttttttttaggatCCGCAAGTA
TATGAATTTTACAGCACAAGATATCGTTGGAATGCGTGCCTACGATTTCT
ACCATTTGAAAGATAGTCATATCGTTCAAGACGCACATAATGATTGTAAG
TTTTTGCATTGATTGAttgcttgattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgattgattgattgattgattga
ttgattgaaatttggtttttgttCGAATTCAGTAAACGCATTCATCATTT
AATTgaacttttataaaatttgagaatattaAATAAGATGCGGGACATGT
TGAATGCGCTTGTGTTACAAAACCAAAACATTTCGCAATTTTAACGCCCA
CAGGCAGCCTAAGGGAAACATTTAAAAGATTTATGTTTATTACTTTAGGA
AATgttcttttttacaaattagtgcaaaaaaaaaacacaaagcaTGCTGA
ATTAGAATTTTGACTCATTTTTCAAACCGATCTTGAGATGTACAACTTTA
GCAAATCACTTTGAAATTGCTTTATAATTTCCGTTAATCAATTAACCAAA
CAAGTAATTTTAACGAGACAAATATCTATAAACATTACAAGACCTTAATT
ACCGTCATTAAGACCTCTCTCAAAATCATGACTGTAataaaattctaata
aaagcctaaattaaatgtattttattGCTCGATGAAGATTTGTAGAGATA
TATCAGCCCTTGTGTACGTGTCCAGGTTGATGTTAACGCATTCATTTATT
TCTCATCATGGCTTTTAATCACTTTGCATATTTTGAAACAGAATGACATT
GTTGCAACAGAAATATATAGTTAAGTCATAATACATGGTACAAACGAACC
CTAGGGATACGAATTTAAAGTATTTAAATTCTGTCGACTGATTTAAACAG
CCATAGAGGTTCTGTCTTAATTATCAATTTTGTTGTGTTGACTAGACCGA
GCAATCTTgtccaaaacaaaaatttattgaaattgatGGACCCTTTCTGG
ATATTCTAGGGTTGCCATAATAAGCGTTATTTTGTCCCTCGAGTCTAAGT
AAATTAATTGGAAAAAAAACTGAACCAAGTGCTGGTATTTTGCTCANTTT
GTCCCTCGAGTCTAAGAAAATTAAttggaaaaaaaactgaaacaagTGCT
GGTATTTTGCTCAACTTGAGAATATTGGATTTTAAAAGTGCAATTATTAC
TCGATCTTTATTTCTCATGATAAAGGTTTAAAGAGTGGTAAATGTCGTAG
TTTGGCATACCGTTGGATGAACAAGACCGGAGGATGGGTGTGGATGCAAA
CTGTCGGTACGGTCATCTCACGGAAAACCGCCAAAGGGGAAGAAAATCAA
ATCCTCTGCGTCAACTACATATCAAGGTACGCGAATCTGTTACAATCTAA
CATTCTAATACTTCGACAAAAATGCTGTTTCTCGTATAacagtcaaaaaa
attcagtaaaattCCTGAAACTCAAGGGTCACTCTCTGACGAGAATTTTA
TACATGATACGCATCCCTTATATCAAAACCTATCAGAGGGAATGTGTGCA
GCCTATGTGCTATCCACGTAAATATCGAACGTAAAAGAAATATATGAATC
TTAATCGTTTGTTTTTCGTCTATGTGTAGTGATGTTGAGCACGAAGATGA
GATGATGCATTCCattcaattgaaattcaaagaCATGGGTATCACCAACA
AGGAAGATGACATGTCTGATTTTGGTAACGATGCATCCACCGGACCAGCT
GATATCACTTCGGATGATGTCCGAAAATCGTACGCTACTCCCTCTACTGA
AGGTATACTCTCATTACCTATTCTTTTGCGGCCACAAGTTATTGTCTGCA
TAATCAAATAGTTTTTAACAAACAAAAAGAAGCTTCtggttattttcttt
ttaccatCATAATCAAATCAATAGTAATGTGAAAAGCACTGTCAATTACA
AAATTTTTTCCTTACATTTAAGATTTAGCGGAACTAATTTCTCATTGCTa
caaagtgtattttcctagtGTGTCCTACATTTTAAAACCTCTTCCTATAG
GATTATGTTCGTTTCCTAACCAACCGTAATGTAGTAAACGTAATGCATTT
CAATTTATTTGTTCTCCTATCTAGAAGCAGCAGATAAAGAAAGTTACTTG
AAGTCTATCGACTACCATAACATGACGAACGGACATCGTGCGATCGTTTC
TGACGAACCTGTCAAACCAAATCCTGCTGTTTTCACCCACACTCCTAACC
TGCCACCAGCGCCTATCCCCGCGCGACCTCTGGTCGATGAAGAAACAAAA
CGGCGACAAGCTAACATCATGGGTGACCTACAACTAGCTGATATGCTCAG
CGAAACTGGTCCCCTACCACAGATTGATAACCCGTTCCCCGACAGTCCTG
AATCGTATGATATGAGCCATTGTGATATTATATCATTACAAGGCGCACCA
CAACTACcaaacgaaaacaaaaatttcggCTCGCGGGAGGTTTTCTCTAT
GAGCAACACCATGAATTTCCACCACGCGGATAACAATaattctttccaaa
ttcaacaaacaTCAACTTCTATCTACATGGAGCAACAGATCTCCCCACCT
CTTCCACGACAGACACAACAACAAGCGAACAACAGTATGTCTCCACAGTA
TCAACAGCCGCACGATCCCATCGTCATGAATGAAGTCAATACGTTTTTCA
ACGAGATGTCGACAGCTTCAAACAATTCTCCTTACCCacaacatcaacaa
caacaacaacaacctatCCAAAATAATGCAAATTCTCCACAATCAAATGA
TTTCTACAATCAAGATCTTTCACCCAAATACGAAACCCCGTCTCCAGAAT
ATCCCGCCCAAACGAATGGTGGCGGTAATTGCTCTCCCCCTTACATGGCG
CCCGTTGGAAAAGAATCGCCTCCCTATTTAGGGCAGTCAATGAATAGTCC
GCCCATGTTCAACAATAACCAGCAGACAAATGCACCTCCACCCTATACTA
GCTCACAATATAACGCCCCACCTCAATATAACACCCAAACGGCGCCCAGT
AACAGAATGCATTTCAACCCACAAATGGAGAGTCCTTTGgaattcaacaa
tttcaatacTATCATCAAAACAGAACCACCCAACTATATGGGATGTGGCG
CTCAATATAGGAGTAATAATATGATCAATAGGGGTAATGGTATGACCCAG
CAACAGCCACTTCAAACTCAATGTATACcccagcaacaacaacaacgaca
gAATCAAATGAACAATATACCACAATGTCAAGGTGGTCATTTCGATACCA
ATCTCCCCAACGGTGGCGGTGTACTGAACCAAGGACAATTCAATCCAGAT
ATCCCTCCTATAGAGGTGCTTGATAATTTGGACGATATTGAAGATATAAT
TTCTTCCTGTATAGAACAAGATGAAATCCAAAATCAGGACTTTCAACAAA
GGTTATTGATTCAACAACAGCAGGAGCAACAATTGCAACAACAAGCTTTT
GTTGAACAACAAATGAACTTTCAGAACCAACAACAAAACGGACAATTACC
ATATAATGCTCCTTTGAGGTGTAATACAACGATACCAAACAAGTTTGGTG
GCTATAATAACACTAATTCCATattctaaaaaaagaaatcttttactctt
tctttgctttgaaaaaattcacaacttctaatattttttaatgttttagc
AATCTGCCATTATTAAAACGAAAAATATCCCAGCCGCTTTCCTATAACTC
GAATATTTTTTCGCCAGCGTTTCAAAGGTTTTTATGAACAACTCGTAACT
CTTCAACTCGATATCTTTTAAGATTGAACAATATTATATTCAAGTTATAG
GGAGCTTAATCTAAtgtattttataaattttatttgcttataTTGAGATA
ACAGCCTTATTTTATCAATCTGTGCACTTATACTTTATCGTGaaattctt
ttgatattttctttatttttggttCGGGcttttctgttttatttttgtta
gtttttcatttgtttttcataaattttagtTTTGTCGGTTTATATTAAAC
tatttattattatattttatacTTGAATATAAACCAACACCTATTTACTA
CTTTCGATGCTGAAGATATTTTTGTCGATGTAAGCGAGCACCACGGAAAG
TACAATGTATTTTCCGAAGCTTTCTCGGCTCTAATTTGTTCCATTTTGTT
CTGTTCTTGTTTCTTTATATTAATTCTTAATTCTAACCAAATGGATTCGA
GATGTTCCAGAAGACAATTTTAGCTCAATTTTGAGAAGTTTGACGCCCTG
GATTTCCCCTGATTTTTCGGGCAATTTTTGAGGTATACCTCATTGAATTT
CGTCAAAACTTCAGAGACCTCCCCTggattttctaactttttttctattt
tctctctCAAGGTTATTATATCATGCTTAAAAGCGAAATAAATTtactgt
tttttataaaatttctgctgtgtaatttttatgtttatatttttttattg
tttgcattcacactttttgtaaatattgaaaACTTCCATCAATTATTTCT
CCTCATTGTTCCCCCCTTGTTGTATATTATATTATCCACTGGGGAATAAT
ATTACCCCATACTGTCTATCGATTATTTTTCAtatattataaaataaaat
gaaatgtaCAGTTATTCAATACCACAGCAATACTGGAGTTCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009004XLOC_009004Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016102-exon-sc0000226-1491911889:318555..318689TCONS_00016102-exon-sc0000226-1491911889:318555..318689Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1510915933:318555..318689TCONS_00016102-exon-sc0000226-1510915933:318555..318689Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1575043694:318555..318689TCONS_00016102-exon-sc0000226-1575043694:318555..318689Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1491911889:319127..319311TCONS_00016102-exon-sc0000226-1491911889:319127..319311Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1510915933:319127..319311TCONS_00016102-exon-sc0000226-1510915933:319127..319311Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1575043694:319127..319311TCONS_00016102-exon-sc0000226-1575043694:319127..319311Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1491911889:319965..320018TCONS_00016102-exon-sc0000226-1491911889:319965..320018Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1510915933:319965..320018TCONS_00016102-exon-sc0000226-1510915933:319965..320018Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1575043694:319965..320018TCONS_00016102-exon-sc0000226-1575043694:319965..320018Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1491911889:320470..320576TCONS_00016102-exon-sc0000226-1491911889:320470..320576Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1510915933:320470..320576TCONS_00016102-exon-sc0000226-1510915933:320470..320576Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1575043694:320470..320576TCONS_00016102-exon-sc0000226-1575043694:320470..320576Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1491911889:320891..320980TCONS_00016102-exon-sc0000226-1491911889:320891..320980Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1510915933:320891..320980TCONS_00016102-exon-sc0000226-1510915933:320891..320980Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1575043694:320891..320980TCONS_00016102-exon-sc0000226-1575043694:320891..320980Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1491911889:321359..321491TCONS_00016102-exon-sc0000226-1491911889:321359..321491Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1510915933:321359..321491TCONS_00016102-exon-sc0000226-1510915933:321359..321491Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1575043694:321359..321491TCONS_00016102-exon-sc0000226-1575043694:321359..321491Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1491911889:322315..322433TCONS_00016102-exon-sc0000226-1491911889:322315..322433Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1510915933:322315..322433TCONS_00016102-exon-sc0000226-1510915933:322315..322433Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1575043694:322315..322433TCONS_00016102-exon-sc0000226-1575043694:322315..322433Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1491911889:322684..322868TCONS_00016102-exon-sc0000226-1491911889:322684..322868Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1510915933:322684..322868TCONS_00016102-exon-sc0000226-1510915933:322684..322868Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1575043694:322684..322868TCONS_00016102-exon-sc0000226-1575043694:322684..322868Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1491911889:323343..323449TCONS_00016102-exon-sc0000226-1491911889:323343..323449Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1510915933:323343..323449TCONS_00016102-exon-sc0000226-1510915933:323343..323449Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1575043694:323343..323449TCONS_00016102-exon-sc0000226-1575043694:323343..323449Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1491911889:324580..324730TCONS_00016102-exon-sc0000226-1491911889:324580..324730Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1510915933:324580..324730TCONS_00016102-exon-sc0000226-1510915933:324580..324730Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1575043694:324580..324730TCONS_00016102-exon-sc0000226-1575043694:324580..324730Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1491911889:324984..325156TCONS_00016102-exon-sc0000226-1491911889:324984..325156Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1510915933:324984..325156TCONS_00016102-exon-sc0000226-1510915933:324984..325156Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1575043694:324984..325156TCONS_00016102-exon-sc0000226-1575043694:324984..325156Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1491911889:325479..328048TCONS_00016102-exon-sc0000226-1491911889:325479..328048Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1510915933:325479..328048TCONS_00016102-exon-sc0000226-1510915933:325479..328048Clytia hemisphaericaexon
TCONS_00016102-exon-sc0000226-1575043694:325479..328048TCONS_00016102-exon-sc0000226-1575043694:325479..328048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:318555..328048 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.57644	2.31917	1.00761	0.291546	0.00172704	3.87027e-07	0.873723	2.09338	2.95565	9.20655	6.08978	3.77543	11.3468	12.6119	6.63791	8.96146	15.2554	14.716	17.706	23.0662	12.9075	14.3692	6.36326	7.6459	0.120086	0.014624	10.7815	7.57747	4.80463	4.07702
Blast
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BLAST of TCONS_00016102 vs. Swiss-Prot (Human)
Match: NPAS3 (Neuronal PAS domain-containing protein 3 OS=Homo sapiens GN=NPAS3 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 9.411e-80
Identity = 161/407 (39.56%), Postives = 232/407 (57.00%), Query Frame = 2 
Query:  149 RKQKSRDAARNRRSKENDQYEALAKLLPLPESISSQLDKASIIRLTIGFLKYKDLIGTGGGMQHNGYRRNMMLMSXXXXXXXXXPYHPQRAVQKTSVYSDI-EQRIGKHIEHALDGFMLTVSDNGHFIYVSDTIEQFLGLRQIDLIGTSAYDVIHPEDHQTFMELLCSTF--------QKSNQQYKMNNMMDFDAMTFMEMERKSKQGFV-------SLFIRFKCTLAKKGASVSKSAGYKVIHISGQMIPFKNLDHK---GEQMFALVATGHALPPPTICELKLDTKVFVSRVSMDLKIVFCEGKIRKYMNFTAQDIVGMRAYDFYHLKDSHIVQDAHNDCLKSGKCRSLAYRWMNKTGGWVWMQTVGTV-ISRKTAKGEENQILCVNYISSDVEHEDEMMHSIQL 1309
            RK+KSRDAAR+RR KEN ++  LAKLLPLP +I+SQLDKASIIRLTI +LK +D    G    +       + M     N +      QR    +++  ++ E  +G HI  +LDGF+  ++  G F+Y+S+T+  +LGL Q++L G+S +D +HP DH    E L            Q + +    +      + T   +E  S            S FIR K TL K+G  + KS+GYKVIHI+G++    +L H      Q+  LV   HALPPPTI E+++D  +FV+RV+MDL I++CE +I  YM+ T  DIVG R Y F H +D   ++ +H D L  G+C +  YRWM K GG++W+Q+  T+ I+ K A   E  I+ VNY+ S+ E++D  M   QL
Sbjct:   52 RKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWN-------LRMEGPPPNTSVKVIGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHI-KSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNAN--EKNIIWVNYLLSNPEYKDTPMDIAQL 448
The following BLAST results are available for this feature:
BLAST of TCONS_00016102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPAS39.411e-8039.56Neuronal PAS domain-containing protein 3 OS=Homo s... [more]
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