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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016122 ID=TCONS_00016122|Name=TCONS_00016122|organism=Clytia hemisphaerica|type=transcript|length=747bp
GGTGGAACCCCTTTTCAACCTCAAGTCCAACTTCAAGCACAACAAATGCA
ACAAAATGCGCAGCAATACATTCCGCAACAGCACCAGCagcatcaacaac
aacaaaggaATGTCTATCAAACAATACAGCCACAACAGGCCCATCATTCA
ACAATTCAACAAACTCAATCTCATCAAACTCCGGAAAGTGTCCCAAAAAA
GCGTACTATAAAAATTGTTGACCCAAATTCGGGCAAGGACTTGGTTAGTG
AACTTCAAAGTCGCAAAAAAACTGAAACAGAATAAGGCTAATGCAGCCCC
ACAAGGTGGTCTTGATGAGAAGAAGTACTGCCCAAAATGTGTTGAAGAAT
ATCCAATATTTGCTATATACTGTTCTGAGGATGGGACACCTTTAGCCTTA
AGAAAAAGCAGattttcaacgTTGAAGtgttgatattcatgatgtaatct
ttacgCATAAATAATACATGCGACGTAAAAACTTGGCTGCCATTATTGTT
GGCACAATATCGAGCCAACTAACCTATAGTATTGAAACTGGGGGCTCGAA
AAATTGAAACCTTTATAACTTGTGTCTTGTGTCAAATCCAAATTAACAAT
CAACTAACGTAGTACTTGCTGTTTAGTTTTGATGATTCGTTTTAACACTG
CAACGTTTTTGCAAGCTCAGCATATTTTTAATAACAGTACAGACCTCAAC
TCATTATTGATTCTTACGATCTGGAGTTCAGTGTTCTTTATCTCATG Run BLAST on NCBI transcript from alignment at sc0000226:124568..128756- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016122 ID=TCONS_00016122|Name=TCONS_00016122|organism=Clytia hemisphaerica|type=transcript|length=4189bp|location=Sequence derived from alignment at sc0000226:124568..128756- (Clytia hemisphaerica)
GGTGGAACCCCTTTTCAACCTCAAGTCCAACTTCAAGCACAACAAATGCA
ACAAAATGCGCAGCAATACATTCCGCAACAGCACCAGCAGCATCAACAAC
AACAAAGGAATGTCTATCAAACAATACAGCCACAACAGGCCCATCATTCA
ACAATTCAACAAACTCAATCTCATCAAACTCCGGAAAGTGTCCCAAAAAA
GCGTACTATAAAAATTGTTGACCCAAATTCGGGCAAGGACTTGGTTAGTG
AACTTCAAAGTCGCAAAAAAACTGAAACAGAATAAGGCTAATGCAGCCCC
ACAAGGTATGATCATGATAAAAAAAGGGAAACAAGTTAGAAAGGAAATAA
TCAATATCCCTTAATTAAATCTATCATTACACATAAATGCATAAATCGAG
CAACATGACTCTTAAAATCGGCGTTAAACGGGTTTTCTTAAGATTTTTCC
AGTTGTACTCTACATAGTTTCATGATCTTTCGCACAATGATACAAAATGA
AAATTCCAAAATTGACAATATAGAGAAAATAATTTTTCTGTTCGTTAAAT
CCGGAAATGTCCCGAAAAAAGCGGTTTTTAGGGATTTTCTTTGGAGATTT
TATCAACAGTTGNATGTCCCGAAAAAAGCGGTTTGTAGGGATTTTCTGCG
GAGATTTTATCAACAGTTTTTGTTTGCATGTACCATTAAGGACAAGGCCG
TTAATTTGATATATAACCATCACGTGACGGCGAAAGAACTCAGGAAAGCT
GTTATGCTTCGATTAAAACTTAAAAAACATAAAGTAGGCCCGGTTCGTAA
CAAAAAACATCAAAAACAAAATTTGAACAAAGATATAGAATCTGAAAGCT
CTCGAAAAACTATATATAAGACTTTTAAAAAGTATGACCGATTTCTGTAC
TGAACGGGGGAGTTATTTGATGTAGAAGTGCCATTTTATAAGCGATTTAT
GACCAAAATGAGGGGGAAACCACCACTTCTTCATCAAATCACTCCCGTTC
AGTACAGAAATCGACCATACTCGCTTAAAAGCCTTTATATAGTTTTAAAG
TTTTTTTTAGAGCTTTCAGATTCTATAATTGGATTTGGCCTGTTTCTGGG
CCGCGCTTCTAATATCAATCCATAGGGTATTAGGCATGTCTGGTCCGAAT
TTGGTGTTTTGTTTCAAAATTGCACGATAATTACACCAATCAGGCCTACT
AATAGCAAACAATCACGAGCGATCACGATTATCACGAGCAATGATGTTGC
TCGTGATAATCGCCAGAGGAACTTTGTCGTCAATATGAATAGGAAAGCCA
AGAAATCTTTCTTCATCAAAAATTACCCAAAATAATTTCCCAAAGACCTG
TGGGACACTTTTAAGCCCCTCTTTTCAAATAAGGACAATTTTGCTGATGA
GCGAATTCAGCTTATTAAGGATGATCGCACTATATCTCAATATAAGTGCT
GCGACTTTAACCCTTCCAACATCTTGGGAAATCTTTTGATAGCTTTTGAG
ATACATGCTTTTTTTTATCNCCTTATCTCGATATAAGTGAGTATAACTTT
TAAGATACATGCTTTTTTTTATAAGAATACACTTTATAAGAATGTCCATG
ATAAAAATGGCCAAACAACTAAGAATATGCTAAGAATATCACCATCATGG
AATTTTGCTACTAAAGCTAAGAATGCCATTTTAAGAGCATTTTCAATTAT
AAATTACCCCCAAGTTAGGCTCACTCCTTTTACAAAAGTGTCATTTTATG
CTTGAGACGTATGTACTAAATGTTAAATCTAGTATGAATTAGGATCCTAA
CCGCTAAGAATATGGTGTAAGAATATTTTAGGATGATTTTCCCAAAAAAG
TTAAGAATATCCATGGTGAAATGGTTTTACACCATTCTTATAAAAAAAGC
GTGTATTCATCCGATTGACTTGAAATTTTGCAAGTGTGCAGCAAATATGA
ATTGGCATCTTTGGTAAAGATTTCGACATTATTAATGACGTCATCGTCAC
CTGACGACGTCATCATTCATTGAAAATACCGAAAATAGGATCCCCCTCTA
ACTTTTTTTTACTTTAACCTTTTTTGCGCAAATTTTGTGAGGCAACTACA
CGTGACATGTATTTTTGTGGTAGAGGGTCAAATCTTTGCCACCTGTTGGT
ATCGTGTATTTTACAGATTGGCCCAAAATTGCCCTTTTTTGCCTAAACAG
CCCTATTACAGCGATACTGTATCTAGTGATTGGAAAATGCTGTTGACTTG
AAATTTAGGCAAGTATTGATAATACGAGCGGACGAGTAGTGGTTATGCTG
AAAGTGAGCAATTTTAAGTAAAAACGGACCGGTCTGTAAAAAACCAACTG
GTTACGTGACTCCATTAAAGATTTTGCCCACTGTCTTAGATGATCAATAT
CTGTCACTGGTGAAAATTTCAAAAGTGAAAAGCTCCATTAGTTCCTGAGT
TCTGGCAGGTGGTCAACGAGTATTTTACAGACCGGTCTGCAAAGTTTCGA
AAACCTTATAGGAACGAATTTTTTCTGCTACTAATCTTCTTTCGACCAAT
CAGCCTTTAGGAACAAATTTCAGTCAAATCGAACGAGTCAATCAGTAATA
CATGATTTTGATAAAGATTACATTCTGGTCTGTAAAATACCAACCAGACA
GGTGGCCGAACCAAAATTTTGTCAATCCCCCCAAGATGCTTCCTCTAGTA
AAAAAAAAGAAACGCTCGATGTAATAAATCGCCTGAACGATTCTAAGTCA
GTCAGTTTTGAACTTACAAAGACTATAAAGCTAGCCAAATTTGTTTTTGC
TCCTAAATTGACAACATGTTTCAACCACAGTATTGAAATTCAACAGTTTT
CTGATAGCTTGAAGCAGGCTGATATAATTCCAGTCCATAAAAATAATATC
AAGCACGACAAGGATAACTACTCGCTTCTCCGACTAAAATCTTTGAAAAA
CTAATCTCGAAACAATTTAGCATTTTTCTTGAATCCTTTTTCTCTTAAAA
CTCTGAGTTAAAAGTGGGATCATCTTAAAGTAATTGGCTACCTTTGAGTG
CCGCAAGAATCTATTTTAGGTCCACCCTAACATATTATATACTGTTGGAA
AGGAAATTTAATTCTGAACAATTCTGAGTCACATTTGATAAAATCTTTAT
GTCATTCACCTCTTTTGTATTTATTTAATATGTATATTGTATTTTATTTT
AGGTGGTCTTGATGAGAAGAAGTACTGCCCAAAATGTGTTGAAGAATATC
CAATATTTGCTATATACTGTTCTGAGGATGGGACACCTTTAGCCTTAAGA
AAAAGCAGGTAACTACTTGTTATAAAAGATGACAGCTAAAATGTCAGATG
ATGGGACTTGGACCATGCAGATGATGTTTTTTGGACCGTCTTTAAGCGTA
TATCAAATAATCTGCGTGCCCCTAACCAAAAAATTCGGATCGCGACGGTT
AGGAATTGTTATAATTTGTATAACTCTAACTAAAACAAATACCTAAATGG
ATTCCGAAAAATGGTCAGTAAAGACAAAGGAATATAATTTATATAATTCA
GCAAGGTAGAAAATAGACCAGATTATGGACCAAAATAAGCATGCATTCAT
CGTCCGACTTGCAGAGTTGATAATTTTAATATTTAGTTCACCACTTTCAC
TTCAAAAATGCACATTTAAAGACTCGCACATACACAAAAGCAAAAGCACA
CGTTCAAGTTAAAGCTAACCGCTATGCACATATGTAGCAATGTAAAATAT
TTAGTTGAACACTCCAAANAACCGCTATGCACATATGAAGCAATGTAAAA
TATTTAGTTGAACACTCCAAAATATAGACTATTCGTTTTATTTCTTTTTC
AAGATTTTCAACGTTGAAGTGTTGATATTCATGATGTAATCTTTACGCAT
AAATAATACATGCGACGTAAAAACTTGGCTGCCATTATTGTTGGCACAAT
ATCGAGCCAACTAACCTATAGTATTGAAACTGGGGGCTCGAAAAATTGAA
ACCTTTATAACTTGTGTCTTGTGTCAAATCCAAATTAACAATCAACTAAC
GTAGTACTTGCTGTTTAGTTTTGATGATTCGTTTTAACACTGCAACGTTT
TTGCAAGCTCAGCATATTTTTAATAACAGTACAGACCTCAACTCATTATT
GATTCTTACGATCTGGAGTTCAGTGTTCTTTATCTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016122-exon-sc0000226-1575043694:128452..128756 | TCONS_00016122-exon-sc0000226-1575043694:128452..128756 | Clytia hemisphaerica | exon |
| TCONS_00016122-exon-sc0000226-1575043694:125449..125554 | TCONS_00016122-exon-sc0000226-1575043694:125449..125554 | Clytia hemisphaerica | exon |
| TCONS_00016122-exon-sc0000226-1575043694:124568..124903 | TCONS_00016122-exon-sc0000226-1575043694:124568..124903 | Clytia hemisphaerica | exon |
| TCONS_00016122-exon-sc0000226-1510915933:128452..128756 | TCONS_00016122-exon-sc0000226-1510915933:128452..128756 | Clytia hemisphaerica | exon |
| TCONS_00016122-exon-sc0000226-1510915933:125449..125554 | TCONS_00016122-exon-sc0000226-1510915933:125449..125554 | Clytia hemisphaerica | exon |
| TCONS_00016122-exon-sc0000226-1510915933:124568..124903 | TCONS_00016122-exon-sc0000226-1510915933:124568..124903 | Clytia hemisphaerica | exon |
| TCONS_00016122-exon-sc0000226-1491911889:128452..128756 | TCONS_00016122-exon-sc0000226-1491911889:128452..128756 | Clytia hemisphaerica | exon |
| TCONS_00016122-exon-sc0000226-1491911889:125449..125554 | TCONS_00016122-exon-sc0000226-1491911889:125449..125554 | Clytia hemisphaerica | exon |
| TCONS_00016122-exon-sc0000226-1491911889:124568..124903 | TCONS_00016122-exon-sc0000226-1491911889:124568..124903 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000226 | supercontig | sc0000226:124568..128756 - |
Blast
The following BLAST results are available for this feature:
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