TCONS_00016142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016142
Unique NameTCONS_00016142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length976

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016142 ID=TCONS_00016142|Name=TCONS_00016142|organism=Clytia hemisphaerica|type=transcript|length=976bp
agatttttgagaaaatgtccgTTATGGATTTGTATGAAATTGTTAAATTA
GAAAGATTGATGAAAAATCTGttacgaaaatcaaaaagaattccAGTCAC
TAAATCTGACGATGTTGACCATTCAGATTTGACGGATGATCAGATCGCGG
AATTTCGTGAAGCGTTCGCCTTATTTGACAAAGATGGTGATGGAACCATT
TCATCCACTGAACTTGAAACTATTTTAAAGAGCTTAGGACAGAAGCCAAC
ACAATCAGAGTTGAGAGATATGATCAATGAGGTGGATGCTGATGGAAATG
GAACAGTGGATTTCAGTGAATTCTTAACCATGATGGCTACCAAGAATAAA
GGATCCAGTGCTGATGATGAAATTAAAGAGGCGTTCAGTATTTTTGACAA
AGACGGTAACGGCAAGATCAGTGCAGACGAGTTGAAGAATGTGATGATAA
ATCTTGGTGAGAAATTAACCGATGAAGAACTGGATGAAATGATTAGAGAA
GCAGACATCGATGGTGATGGAGAGGTCAACTATGAAGaATTCGTCAAGAT
GATGTCTGCTGGGACTTAAAAGTGAAATGACATTTTAAAGAAAAGTATTC
CAAATgtacatttttatataataattcAACCAGCTATCAGTCGATATGAC
CAATTGGATTGACTGTACGGTCACTTCCTATTGATGTTAATCTGGAACAA
AAAATCGCAGGGATCCAGATCTTGGCTTCGCGTATACAAGGAGGATTTGA
CATTGTCTTGGGTTATTATAAAGAACTTTTAGTTATTTTTAGTCTAACca
taataattttgaaatagttgacatattgtatatttatttcaaataatatt
ttgcAAATTGTAGAAATATGGTATTTGAATTGATCTATCAAAACAAAGTA
CCAAACCAAATTATCAAGGTGAAGctacaattttcttttttttattgaga
gtACATTGCATGCAACTTAGTCAAGC
Run BLAST on NCBI

protein sequence of TCONS_00016142-protein

>TCONS_00016142-protein ID=TCONS_00016142-protein|Name=TCONS_00016142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
IFEKMSVMDLYEIVKLERLMKNLLRKSKRIPVTKSDDVDHSDLTDDQIAE
FREAFALFDKDGDGTISSTELETILKSLGQKPTQSELRDMINEVDADGNG
TVDFSEFLTMMATKNKGSSADDEIKEAFSIFDKDGNGKISADELKNVMIN
LGEKLTDEELDEMIREADIDGDGEVNYEEFVKMMSAGT
Run BLAST on NCBI

transcript from alignment at sc0000226:241075..244429-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016142 ID=TCONS_00016142|Name=TCONS_00016142|organism=Clytia hemisphaerica|type=transcript|length=3355bp|location=Sequence derived from alignment at sc0000226:241075..244429- (Clytia hemisphaerica)
AGATTTTTGAGAAAATGTCCGTTATGGATTTGTATGAAATTGTTAAATTA
GAAAGATTGATGAAAAATCTGTTACGAAAATCAAAAAGAATTCCAGTCAC
TAAATCTGACGATGTAAGTCATAATTCAAGAGTAGTTTATCATGCTGAAA
GGAAAACAAGGGATTGCGCGAATTAGGCAGCTTTGCTTTTTCCAGGTGGC
TAGTGTGCTGGATTTCATTTTGTACAAGATTTTACTTTTATCCGGCGGTG
GCGACCCATACAAAGAAGCCCGTAAAGGAAAAAACTGTCTAAAACATCAG
AAGATGAGCTCCCAGACCCCTTATTTTTTGGCAATATTTTACGAGTATGA
GATTAAAAACTATAGCCCCTCTTCTTCTTTTTGTGTTTCAGGTTGACCAT
TCAGATTTGACGGATGATCAGATCGCGGAATTTCGTGAAGCGTTCGCCTT
ATTTGACAAAGATGGTGATGGAACCATTTCATCCACTGAACTTGAAACTA
TTTTAAAGGTGCGTTCTGATATACTATTTTGTGACACGAGGTTCAATTAA
ACTTCCAGAGCAAATTACCAACAACGATACAAGCCTCAGATTCTAAAACG
TTAAAGCTAAGAAAAAGCCTCTCCAGTCCGAATGATCTCTTGTTCAGTCC
ATATGAAAAATATGAAAGGATAATAAGAACAGCCCATGGGATGACGTACA
GAACATACAGGTAACAACATTGTAACAACGATAGATTCAAAGTGCTACGT
GGCTGTTGGTGCGAGTTTTTTCAGATAGCTTTTAGTCACAGTGTATTCCA
TTACCAGATAAAAGAGGATTGGGTAAATAATGAGAGAACTCCGTCACGGG
AATATTTTTTTAGACGTTTATCTTCTGGATCACGGCTTTCATTCAGCTTG
AAATGAAATATTAAACCTTTAAAGTTACTAAAATATTTCTTAGTAGAACT
GTCGATCTTATCCCAGCTAGCACACAACGTTGTTTTAACGTTCATCTAAC
GTTATATGGACGTTGTGAACGTTAGATAAAAGTTGACACAACGTTGTGTG
TCAGCTGGGATGGGCCAAGATTATACATTTATGCAATGTTCTTACATTTT
TTCTCCAGAGCTTAGGACAGAAGCCAACACAATCAGAGTTGAGAGATATG
ATCAATGAGGTGGATGCTGATGGAAATGGAACAGTGGATTTCAGTGAATT
CTTAACCATGATGGCTACCAAGAATAAAGGATCCAGTGCTGATGATGAAA
TTAAAGAGGTTTGTATGTCCAATCTAAGATAAATGATTCGTCATATCCTT
AATTTAAACAATAAAATTAATGGCAAAAGCCCGAGCTTTTTTGAGTGCTT
TCACTAAAACATTACGACACGAGCATTAACAAAACATTAAAAAAAATTCT
CGGAAAATTGTGGGTTTGCTAAGTCTTTTCTGACGTCACTATCTATCTGC
GGCAAAAAGATTTTACCATTTTTTCATTAATAACTCGTCATCTAAAATAG
ATAATTTGAATTCCTTTTCAACACTATTATTCACAGGCGTTCAGTATTTT
TGACAAAGACGGTAACGGCAAGATCAGTGCAGACGAGTTGAAGAATGTGA
TGATAAATCTTGGTGAGAAATTAACCGATGAAGAACTGGATGAAATGATT
AGAGAAGCAGACATCGATGGTGATGGAGAGGTCAACTATGAAGGTCAGTA
TTCTTGAATTCGTGTGAAAAGATGTTGAGGTCATCAAACATCAGAGCTAG
TCAGGAAAAATTCATAACTAACTAATTGACTCCCTCAAAGGGTCATAAAT
TATTGAAATTTGGACTAAAACTTGAAAACTTTGCCTGAAACTTTGGGGAA
AAAGTCTCTTTAAGGGTGAAAAAAACGTTAAAAAATGGACAGACTTTTCT
ATAGGTTTCTCTAAGGGTCGATTTTAGGAATATGACGTACCCGTCATCTC
GAAAACCTAGTAACCCCCTCCCAGGAAAGATGCTGCCCAGCTGGCACAGA
AACGTTGTTTTAACATTCATCAAATTTTACATGAGCGTTAAGCTAAGGCT
ACACTGATAGATAGTTTTTTCAGGCAGCTGCAATGCAATTAACGTTGCGT
TGCAAGCGCGCGAAAATTGCAAAATGTAGCACGTCAATTTTTTCTCCAAT
TGCTCTGCAACGCAATAAAAATATTGCAGAACATATTGCAAGTGTCTGCA
ACAAAACTGTTTTTTTGACGTTTTTCCTGCTTCCTTTTTTTAGATGGCTA
GAAAGCAACAATTTTCAGGCGGCTGCAATGCAACAATTGCATTGCAGCCG
CCTGAAAAAACTATCACTGTAACCTTAGCTTTAGATGGACGTAGGTTGTT
GTGACGTTCTGTGCCAGCTGGATGAGGGCTAGTCAGGAAAAGATCCTTGT
AAAAACAGCACGATCACGAAAATATTTTGATATTGACTGAAAACTGCTAA
TTCTAAGGTGGTAAAAGGCATAGAAGCACCGAAATTTGTAAGAACGAACA
AGATTCAGTACTTAAATACACAAGTCTGAAAATTTCCCTTAAATTTCTCT
ATTCTCGTGACCACTGAAGAATCTGGAAGATCCAATATTCCCCAATATAA
TGAATATGAAAGTGCTACCAAATGTCTAAACGTGTGTTGTGTGATTTGGA
CTATTTTTATTATAGTGCACACTGAAAAACTTTTGATGACTTTGGCGATA
AAGGGTGGAGGCGTAAGAGTTTGCAGGGTTTTTACGTTTCATCAAATATC
GAAAATTGATCGATCTGATTTGGATTGAGGGCATAAATATGACCATTTTT
TAACAGAACTGAATGCTAGTCAGGTTTTTCTTTGAAAATTGCACGTATTA
CGATAAAATCACTAGGATTATCTTCAGCATCAACTTTATAAAGCCGTCTT
TATTTTTTTAATTCAGAATTCGTCAAGATGATGTCTGCTGGGACTTAAAA
GTGAAATGACATTTTAAAGAAAAGTATTCCAAATGTACATTTTTATATAA
TAATTCAACCAGCTATCAGTCGATATGACCAATTGGATTGACTGTACGGT
CACTTCCTATTGATGTTAATCTGGAACAAAAAATCGCAGGGATCCAGATC
TTGGCTTCGCGTATACAAGGAGGATTTGACATTGTCTTGGGTTATTATAA
AGAACTTTTAGTTATTTTTAGTCTAACCATAATAATTTTGAAATAGTTGA
CATATTGTATATTTATTTCAAATAATATTTTGCAAATTGTAGAAATATGG
TATTTGAATTGATCTATCAAAACAAAGTACCAAACCAAATTATCAAGGTG
AAGCTACAATTTTCTTTTTTTTATTGAGAGTACATTGCATGCAACTTAGT
CAAGC

Coding sequence (CDS) from alignment at sc0000226:241075..244429-

>TCONS_00016142 ID=TCONS_00016142|Name=TCONS_00016142|organism=Clytia hemisphaerica|type=CDS|length=2835bp|location=Sequence derived from alignment at sc0000226:241075..244429- (Clytia hemisphaerica)
AATTCGTCAAGATGATGTCTGCTGGGACTTAAGCGTTCAGTATTTTTGAC
AAAGACGGTAACGGCAAGATCAGTGCAGACGAGTTGAAGAATGTGATGAT
AAATCTTGGTGAGAAATTAACCGATGAAGAACTGGATGAAATGATTAGAG
AAGCAGACATCGATGGTGATGGAGAGGTCAACTATGAAGAGCTTAGGACA
GAAGCCAACACAATCAGAGTTGAGAGATATGATCAATGAGGTGGATGCTG
ATGGAAATGGAACAGTGGATTTCAGTGAATTCTTAACCATGATGGCTACC
AAGAATAAAGGATCCAGTGCTGATGATGAAATTAAAGAGGTTGACCATTC
AGATTTGACGGATGATCAGATCGCGGAATTTCGTGAAGCGTTCGCCTTAT
TTGACAAAGATGGTGATGGAACCATTTCATCCACTGAACTTGAAACTATT
TTAAAGATTTTTGAGAAAATGTCCGTTATGGATTTGTATGAAATTGTTAA
ATTAGAAAGATTGATGAAAAATCTGTTACGAAAATCAAAAAGAATTCCAG
TCACTAAATCTGACGATAATTCGTCAAGATGATGTCTGCTGGGACTTAAG
CGTTCAGTATTTTTGACAAAGACGGTAACGGCAAGATCAGTGCAGACGAG
TTGAAGAATGTGATGATAAATCTTGGTGAGAAATTAACCGATGAAGAACT
GGATGAAATGATTAGAGAAGCAGACATCGATGGTGATGGAGAGGTCAACT
ATGAAGAGCTTAGGACAGAAGCCAACACAATCAGAGTTGAGAGATATGAT
CAATGAGGTGGATGCTGATGGAAATGGAACAGTGGATTTCAGTGAATTCT
TAACCATGATGGCTACCAAGAATAAAGGATCCAGTGCTGATGATGAAATT
AAAGAGGTTGACCATTCAGATTTGACGGATGATCAGATCGCGGAATTTCG
TGAAGCGTTCGCCTTATTTGACAAAGATGGTGATGGAACCATTTCATCCA
CTGAACTTGAAACTATTTTAAAGATTTTTGAGAAAATGTCCGTTATGGAT
TTGTATGAAATTGTTAAATTAGAAAGATTGATGAAAAATCTGTTACGAAA
ATCAAAAAGAATTCCAGTCACTAAATCTGACGATAATTCGTCAAGATGAT
GTCTGCTGGGACTTAAGCGTTCAGTATTTTTGACAAAGACGGTAACGGCA
AGATCAGTGCAGACGAGTTGAAGAATGTGATGATAAATCTTGGTGAGAAA
TTAACCGATGAAGAACTGGATGAAATGATTAGAGAAGCAGACATCGATGG
TGATGGAGAGGTCAACTATGAAGAGCTTAGGACAGAAGCCAACACAATCA
GAGTTGAGAGATATGATCAATGAGGTGGATGCTGATGGAAATGGAACAGT
GGATTTCAGTGAATTCTTAACCATGATGGCTACCAAGAATAAAGGATCCA
GTGCTGATGATGAAATTAAAGAGGTTGACCATTCAGATTTGACGGATGAT
CAGATCGCGGAATTTCGTGAAGCGTTCGCCTTATTTGACAAAGATGGTGA
TGGAACCATTTCATCCACTGAACTTGAAACTATTTTAAAGATTTTTGAGA
AAATGTCCGTTATGGATTTGTATGAAATTGTTAAATTAGAAAGATTGATG
AAAAATCTGTTACGAAAATCAAAAAGAATTCCAGTCACTAAATCTGACGA
TAATTCGTCAAGATGATGTCTGCTGGGACTTAAGCGTTCAGTATTTTTGA
CAAAGACGGTAACGGCAAGATCAGTGCAGACGAGTTGAAGAATGTGATGA
TAAATCTTGGTGAGAAATTAACCGATGAAGAACTGGATGAAATGATTAGA
GAAGCAGACATCGATGGTGATGGAGAGGTCAACTATGAAGAGCTTAGGAC
AGAAGCCAACACAATCAGAGTTGAGAGATATGATCAATGAGGTGGATGCT
GATGGAAATGGAACAGTGGATTTCAGTGAATTCTTAACCATGATGGCTAC
CAAGAATAAAGGATCCAGTGCTGATGATGAAATTAAAGAGGTTGACCATT
CAGATTTGACGGATGATCAGATCGCGGAATTTCGTGAAGCGTTCGCCTTA
TTTGACAAAGATGGTGATGGAACCATTTCATCCACTGAACTTGAAACTAT
TTTAAAGATTTTTGAGAAAATGTCCGTTATGGATTTGTATGAAATTGTTA
AATTAGAAAGATTGATGAAAAATCTGTTACGAAAATCAAAAAGAATTCCA
GTCACTAAATCTGACGATAATTCGTCAAGATGATGTCTGCTGGGACTTAA
GCGTTCAGTATTTTTGACAAAGACGGTAACGGCAAGATCAGTGCAGACGA
GTTGAAGAATGTGATGATAAATCTTGGTGAGAAATTAACCGATGAAGAAC
TGGATGAAATGATTAGAGAAGCAGACATCGATGGTGATGGAGAGGTCAAC
TATGAAGAGCTTAGGACAGAAGCCAACACAATCAGAGTTGAGAGATATGA
TCAATGAGGTGGATGCTGATGGAAATGGAACAGTGGATTTCAGTGAATTC
TTAACCATGATGGCTACCAAGAATAAAGGATCCAGTGCTGATGATGAAAT
TAAAGAGGTTGACCATTCAGATTTGACGGATGATCAGATCGCGGAATTTC
GTGAAGCGTTCGCCTTATTTGACAAAGATGGTGATGGAACCATTTCATCC
ACTGAACTTGAAACTATTTTAAAGATTTTTGAGAAAATGTCCGTTATGGA
TTTGTATGAAATTGTTAAATTAGAAAGATTGATGAAAAATCTGTTACGAA
AATCAAAAAGAATTCCAGTCACTAAATCTGACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009018XLOC_009018Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016142-exon-sc0000226-1575043694:244317..244429TCONS_00016142-exon-sc0000226-1575043694:244317..244429Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1575043694:243922..244038TCONS_00016142-exon-sc0000226-1575043694:243922..244038Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1575043694:243172..243321TCONS_00016142-exon-sc0000226-1575043694:243172..243321Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1575043694:242737..242893TCONS_00016142-exon-sc0000226-1575043694:242737..242893Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1575043694:241075..241513TCONS_00016142-exon-sc0000226-1575043694:241075..241513Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1510915933:244317..244429TCONS_00016142-exon-sc0000226-1510915933:244317..244429Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1510915933:243922..244038TCONS_00016142-exon-sc0000226-1510915933:243922..244038Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1510915933:243172..243321TCONS_00016142-exon-sc0000226-1510915933:243172..243321Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1510915933:242737..242893TCONS_00016142-exon-sc0000226-1510915933:242737..242893Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1510915933:241075..241513TCONS_00016142-exon-sc0000226-1510915933:241075..241513Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1491911889:244317..244429TCONS_00016142-exon-sc0000226-1491911889:244317..244429Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1491911889:243922..244038TCONS_00016142-exon-sc0000226-1491911889:243922..244038Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1491911889:243172..243321TCONS_00016142-exon-sc0000226-1491911889:243172..243321Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1491911889:242737..242893TCONS_00016142-exon-sc0000226-1491911889:242737..242893Clytia hemisphaericaexon
TCONS_00016142-exon-sc0000226-1491911889:241075..241513TCONS_00016142-exon-sc0000226-1491911889:241075..241513Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016142-proteinTCONS_00016142-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:241075..244429 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0462552	0	0.0523725	0.0512383	0.0623777	0.0985834	72.3317	76.677	112.037	114.868	49.9455	91.3079	16.1133	15.7778	0	0	11.0722	11.4771	28.2836	24.3328	8.25811	12.4094	0	2.39441	12.6726	5.33672	0.483143	0	0.0513397	0.209228
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00016142 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.460e-71
Identity = 105/140 (75.00%), Postives = 128/140 (91.43%), Query Frame = 3 
Query:  141 QIAEFREAFALFDKDGDGTISSTELETILKSLGQKPTQSELRDMINEVDADGNGTVDFSEFLTMMATKNKGSSADDEIKEAFSIFDKDGNGKISADELKNVMINLGEKLTDEELDEMIREADIDGDGEVNYEEFVKMMSA 560
            QIAEF+EAF+LFDKDGDGTI++ EL T+++SLGQ PT++EL+DMINEVDADGNGT+DF EFLTMMA K K + +++EI+EAF +FDKDGNG ISA EL++VM NLGEKLTDEE+DEMIREADIDGDG+VNYEEFV+MM+A
Sbjct:    9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00016142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.460e-7175.00Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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