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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016153 ID=TCONS_00016153|Name=TCONS_00016153|organism=Clytia hemisphaerica|type=transcript|length=4640bpRun BLAST on NCBI protein sequence of TCONS_00016153-protein >TCONS_00016153-protein ID=TCONS_00016153-protein|Name=TCONS_00016153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1250bp MTDAAQTSSENGPEEGVEIEDGSDAGSDVYMPDGLAVKSTELSVDGITESRun BLAST on NCBI transcript from alignment at sc0000226:373681..393192- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016153 ID=TCONS_00016153|Name=TCONS_00016153|organism=Clytia hemisphaerica|type=transcript|length=19512bp|location=Sequence derived from alignment at sc0000226:373681..393192- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000226:373681..393192- >TCONS_00016153 ID=TCONS_00016153|Name=TCONS_00016153|organism=Clytia hemisphaerica|type=CDS|length=75060bp|location=Sequence derived from alignment at sc0000226:373681..393192- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016153 vs. Swiss-Prot (Human)
Match: SETD2 (Histone-lysine N-methyltransferase SETD2 OS=Homo sapiens GN=SETD2 PE=1 SV=3) HSP 1 Score: 357.451 bits (916), Expect = 3.868e-100 Identity = 172/368 (46.74%), Postives = 241/368 (65.49%), Query Frame = 2
Query: 767 PPTFENIERNAYLIDKKKSRSRED-RYMTCEC-PFEPDE--PDFVGCDEDCLNRLLMIECNAKVCPTGEFCTNRSFQRGCYLDLEVFKAGRKGWGLRTNEEIRKGAFIMEYCGEVVDNHEFQKRTQIYHNDGISHFYFMTLKQNEIIDATRKGSKSRFINHSCDPNCETQKWTVNGFLRVGFFAVHHIYPGEELSFDYQFQRYGEEPQECFCGSDNCRGVIGTEQASSIPTYFEKIMADSPSRSDXXXXXFQKSALAEELNDIFGHTWELEDRKQTLELLRLMVKVESTKERIVLMKILQVTTDTDVLNNFIRYKGLTLLWSWMV---DAPETKSKYRIEILKTLKHIPIPNKNELDDSKLEAIVQKW 1849
P F+ IE N YL ++KK++S D + M CEC P DE + C EDCLNRLLMIEC+++ CP G++C+NR FQR + D+EV +KGWGLR +++ F++EYCGEV+D+ EF+ R + Y + H+YFM LK +EIIDAT+KG+ SRF+NHSC+PNCETQKWTVNG LRVGFF + G EL+FDYQFQRYG+E Q+CFCGS NCRG +G E SI K+ + + D ++ EL + + L D+ Q L L RLMV++E+ ++++ ++++Q T L +F+ GL+LLW WM D E+ K + EI+KTL+H+PIP KN L++SK+ I+Q+W
Sbjct: 1470 PCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSR-CPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGENRVSIRAAGGKMKKERSRKKD---------SVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLEQKLTCLELIQNTHSQSCLKSFLERHGLSLLWIWMAELGDGRESNQKLQEEIIKTLEHLPIPTKNMLEESKVLPIIQRW 1827 HSP 2 Score: 136.346 bits (342), Expect = 8.637e-32 Identity = 77/184 (41.85%), Postives = 106/184 (57.61%), Query Frame = 2
Query: 3344 TLPPNWKTATDADGRVYYYHTVTRETSWXXXXXXXXXXXXXXXXXRQKKI-----------SRDSPRIAAADTTHKSGPRTPPSISHSSSKDAEL-QKIRDAFKTKISSVVVNCLNSYQKVDCKQGRIKNIDDFKFLARKLTHGLIMKERQRVGNEEQLTCNDSVKVKVKEYIRNYMKKFGPVY 3859
LPPNWKTA D +G++YYYH +TR+T WDPP+ DD + + + + P+ A ADT+ +EL +K ++ F+ ++S +V CLN Y+K DCK GRI +DFK LARKLTHG++ KE + N E L CN++VK K KEYI+ YM+KFG VY
Sbjct: 2390 VLPPNWKTARDPEGKIYYYHVITRQTQWDPPTWESPGDDASLEHEAEMDLGTPTYDENPMKASKKPKTAEADTS------------------SELAKKSKEVFRKEMSQFIVQCLNPYRKPDCKVGRITTTEDFKHLARKLTHGVMNKELKYCKNPEDLECNENVKHKTKEYIKKYMQKFGAVY 2555 The following BLAST results are available for this feature:
BLAST of TCONS_00016153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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