TCONS_00016162 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016162
Unique NameTCONS_00016162
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016162 ID=TCONS_00016162|Name=TCONS_00016162|organism=Clytia hemisphaerica|type=transcript|length=1426bp
GAAAAGtgcattgcaatgtcttcataaaatctttgtttttgtttagaaAA
TTCGAAAGAGGAAAAATGGTAGCTGCAACCAGAGGTGAAAATTGCAGTGG
AGGTGGTTCTAccatgaatattttcaaaaaactttttaatggaATAACTG
CATTGAAAAGTGGAATTCGTAATCGAAAAAATGATGGACCTATGCTTAGT
GGGATCTCTGGATTTGACTCAGATAGTGATGATGATTGTGAAAATGAGTT
TGTTTACACAGATCGTAGGGAGGAAATGATGCTTTTGGATGCCAAATTTG
GATCGAATGATACTCACTTGCCAATTATTCAACAACATTTACAGCCACGA
AATAATCAATTAGACTATCTTGGCCACGGTGGTTTTAGTATTGTCAAAAA
ATGCTGGTCAGAGAAACACGATACCGATGTAGCTATCAAGATTATTTTAA
TGGACAAGGAAAATAATAACTTATATTTGCAAAAATATTTACCTCGGGAA
CTTGAAATTTGGGGTGAGATATCAAAGTTTCAGaaccaaaatatattgag
aatgaTAGACAATTTTATTGGGACTGGATTCACGTATGTTGTTATGGACG
TAGTAGATAATGGTGATCTATCAACTCTAATGAAATTTGGAGCCTTGACT
GAACATAAATCTAGATCTATATTTCGAGGACTTTTTGAAGCTGTTCATTT
TCTGCATAAATTGGGAATCGCTCACCGTGAtataaaacctgaaaatttgC
TTCTGaccaaaagaaatgaagttaaATTGGCAGATTTTACCTTCGTAACC
AAAGACAATCCTGTCTCATCGGAACGTTGTGGAACGCCCGGATTCCTGGC
CCCGGAACAACGGGATTGCGGATACTACGATCCCTTCAAGTCAGATATGT
GGCAAGTCGGGTTGACATTATATTACATGTTCTTTGGTGACATGCCTTTC
ACATCAAGCCGTAAGAAACATTTGATAGATGAAATAGCATCATGCAGGAA
TAAATATCGAAACGTTCCAATGCCGACTGGTAGAATGTTATCGAAAGATG
CTAAAGACCTTGTAGCGGGAATGTTACAACTTGAAATTGATAATCGTTGG
AATATACAGCACGTGAAAGCGAGTTATTGGTTGAATCCTACTGAAAGGAA
TTTGGTGAATAGAACCCCGGTAAACGATGGTGATGATTAATTATCATGTG
TCTTTGACTTGAAAAAGGTGATGTACAGTACATGATAATGCATCTTACCT
CAAAGTCATCTAACATTACATCGCGGACTCATCAGTTGATTGTTTGCAGA
TGACGTTTGACTAATTTAACTACTacattggttgtaagtgaccaATCAGC
TGATACTATGTTGGACTATACTTGGACCTTTTTCAAACTGGAACCCAGTC
Cctttgttcgtttttttatgattctc
Run BLAST on NCBI

protein sequence of TCONS_00016162-protein

>TCONS_00016162-protein ID=TCONS_00016162-protein|Name=TCONS_00016162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
KVHCNVFIKSLFLFRKFERGKMVAATRGENCSGGGSTMNIFKKLFNGITA
LKSGIRNRKNDGPMLSGISGFDSDSDDDCENEFVYTDRREEMMLLDAKFG
SNDTHLPIIQQHLQPRNNQLDYLGHGGFSIVKKCWSEKHDTDVAIKIILM
DKENNNLYLQKYLPRELEIWGEISKFQNQNILRMIDNFIGTGFTYVVMDV
VDNGDLSTLMKFGALTEHKSRSIFRGLFEAVHFLHKLGIAHRDIKPENLL
LTKRNEVKLADFTFVTKDNPVSSERCGTPGFLAPEQRDCGYYDPFKSDMW
QVGLTLYYMFFGDMPFTSSRKKHLIDEIASCRNKYRNVPMPTGRMLSKDA
KDLVAGMLQLEIDNRWNIQHVKASYWLNPTERNLVNRTPVNDGDD
Run BLAST on NCBI

transcript from alignment at sc0000226:394158..396127-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016162 ID=TCONS_00016162|Name=TCONS_00016162|organism=Clytia hemisphaerica|type=transcript|length=1970bp|location=Sequence derived from alignment at sc0000226:394158..396127- (Clytia hemisphaerica)
GAAAAGTGCATTGCAATGTCTTCATAAAATCTTTGTTTTTGTTTAGAAAA
TTCGAAAGAGGAAAAATGGTAGCTGCAACCAGAGGTGAAAATTGCAGTGG
AGGTGGTTCTACCATGAATATTTTCAAAAAACTTTTTAATGGAATAACTG
CATTGAAAAGTGGAATTCGTAATCGAAAAAATGATGGACCTATGCTTAGT
GGGATCTCTGGATTTGACTCAGATAGTGATGATGATTGTGAAAATGAGTT
TGTTTACACAGATCGTAGGGAGGAAATGATGCTTTTGGATGCCAAATTTG
GATCGAATGATACTCACTTGCCAATTATTCAACAACATTTACAGCCACGA
AATAATCAATTAGACTATCTTGGCCACGGTGGTTTTAGTATTGTCAAAAA
ATGCTGGTCAGAGAAACACGATACCGATGTAGCTATCAAGATTATTTTAA
TGGACAAGGAAAATAATAACTTATATTTGCAAAAATATTTACCTCGGGAA
CTTGAAATTTGGGGTGAGATATCAAAGTTTCAGAACCAAAATATATTGAG
AATGATAGACAATTTTATTGGGACTGGATTCACGTATGTTGTTATGGACG
TAGTAGATAATGGTGATCTATCAACTCTAATGAAATTTGGAGCCTTGACT
GAACATAAATCTAGATCTATATTTCGAGGACTTTTTGAAGCTGTTCATTT
TCTGCATAAATTGGGAATCGCTCACCGTGATATAAAACCTGAAAATTTGC
TTCTGACCAAAAGAAATGAAGTTAAATTGGCAGGTAATTGTTTGCTTTTT
GTCTTCTTGGTCTCGATCAATGTCTTTTAGGGCTGTTATAGTCTACATTC
ATTTTTATGTGATGTTGGATGAAAAAACTTTTCCCGGGTGGGAACTTTTT
TAATTTTTGCGTCCAACCTTTCTCATGTTCTCACTTCTTTGCCAGACGAA
GTGCTAATTCTAAAATTTCTTTGTCACGGAAAATAATGTGATACACTTCT
CGACCAATAATATGGGAAAATGGGTACTAAGGTTCAAGTCATTAACAGGA
TCTATTTCATTAATTGATTAATTTTAGTGAGTTAACTCGCATAGTGCTCT
TTCATCCAATTCCGACGCCATGTGACAAGGGTTATTTTGGAAAGACACAG
GGGTGTTGTACTCAAAATCCTGAAAATCTGTCATAAGAATATATCCCATA
CCATAGTAAAGTTTCTCTCTACTAATGGGCCCTTCCTGAAGGTTTAGGAA
TCACAGACCTAAATATACATTGAAACAATTGCGAGCCGTGATTAATTTAG
CTTCAGATGTTTTTGATTTCATTTAAGATTTTACCTTCGTAACCAAAGAC
AATCCTGTCTCATCGGAACGTTGTGGAACGCCCGGATTCCTGGCCCCGGA
ACAACGGGATTGCGGATACTACGATCCCTTCAAGTCAGATATGTGGCAAG
TCGGGTTGACATTATATTACATGTTCTTTGGTGACATGCCTTTCACATCA
AGCCGTAAGAAACATTTGATAGATGAAATAGCATCATGCAGGAATAAATA
TCGAAACGTTCCAATGCCGACTGGTAGAATGTTATCGAAAGATGCTAAAG
ACCTTGTAGCGGGAATGTTACAACTTGAAATTGATAATCGTTGGAATATA
CAGCACGTGAAAGCGAGTTATTGGTTGAATCCTACTGAAAGGAATTTGGT
GAATAGAACCCCGGTAAACGATGGTGATGATTAATTATCATGTGTCTTTG
ACTTGAAAAAGGTGATGTACAGTACATGATAATGCATCTTACCTCAAAGT
CATCTAACATTACATCGCGGACTCATCAGTTGATTGTTTGCAGATGACGT
TTGACTAATTTAACTACTACATTGGTTGTAAGTGACCAATCAGCTGATAC
TATGTTGGACTATACTTGGACCTTTTTCAAACTGGAACCCAGTCCCTTTG
TTCGTTTTTTTATGATTCTC

Coding sequence (CDS) from alignment at sc0000226:394158..396127-

>TCONS_00016162 ID=TCONS_00016162|Name=TCONS_00016162|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at sc0000226:394158..396127- (Clytia hemisphaerica)
ATTTTACCTTCGTAACCAAAGACAATCCTGTCTCATCGGAACGTTGTGGA
ACGCCCGGATTCCTGGCCCCGGAACAACGGGATTGCGGATACTACGATCC
CTTCAAGTCAGATATGTGGCAAGTCGGGTTGACATTATATTACATGTTCT
TTGGTGACATGCCTTTCACATCAAGCCGTAAGAAACATTTGATAGATGAA
ATAGCATCATGCAGGAATAAATATCGAAACGTTCCAATGCCGACTGGTAG
AATGTTATCGAAAGATGCTAAAGACCTTGTAGCGGGAATGTTACAACTTG
AAATTGATAATCGTTGGAATATACAGCACGTGAAAGCGAGTTATTGGTTG
AATCCTACTGAAAGGAATTTGGTGAATAGAACCCCGGTAAACGATGGTGA
TGATTAAAAAGTGCATTGCAATGTCTTCATAAAATCTTTGTTTTTGTTTA
GAAAATTCGAAAGAGGAAAAATGGTAGCTGCAACCAGAGGTGAAAATTGC
AGTGGAGGTGGTTCTACCATGAATATTTTCAAAAAACTTTTTAATGGAAT
AACTGCATTGAAAAGTGGAATTCGTAATCGAAAAAATGATGGACCTATGC
TTAGTGGGATCTCTGGATTTGACTCAGATAGTGATGATGATTGTGAAAAT
GAGTTTGTTTACACAGATCGTAGGGAGGAAATGATGCTTTTGGATGCCAA
ATTTGGATCGAATGATACTCACTTGCCAATTATTCAACAACATTTACAGC
CACGAAATAATCAATTAGACTATCTTGGCCACGGTGGTTTTAGTATTGTC
AAAAAATGCTGGTCAGAGAAACACGATACCGATGTAGCTATCAAGATTAT
TTTAATGGACAAGGAAAATAATAACTTATATTTGCAAAAATATTTACCTC
GGGAACTTGAAATTTGGGGTGAGATATCAAAGTTTCAGAACCAAAATATA
TTGAGAATGATAGACAATTTTATTGGGACTGGATTCACGTATGTTGTTAT
GGACGTAGTAGATAATGGTGATCTATCAACTCTAATGAAATTTGGAGCCT
TGACTGAACATAAATCTAGATCTATATTTCGAGGACTTTTTGAAGCTGTT
CATTTTCTGCATAAATTGGGAATCGCTCACCGTGATATAAAACCTGAAAA
TTTGCTTCTGACCAAAAGAAATGAAGTTAAATTGGCAGATTTTACCTTCG
TAACCAAAGACAATCCTGTCTCATCGGAACGTTGTGGAACGCCCGGATTC
CTGGCCCCGGAACAACGGGATTGCGGATACTACGATCCCTTCAAGTCAGA
TATGTGGCAAGTCGGGTTGACATTATATTACATGTTCTTTGGTGACATGC
CTTTCACATCAAGCCGTAAGAAACATTTGATAGATGAAATAGCATCATGC
AGGAATAAATATCGAAACGTTCCAATGCCGACTGGTAGAATGTTATCGAA
AGATGCTAAAGACCTTGTAGCGGGAATGTTACAACTTGAAATTGATAATC
GTTGGAATATACAGCACGTGAAAGCGAGTTATTGGTTGAATCCTACTGAA
AGGAATTTGGTGAATAGAACCCCGGTAAACGATGGTGATGATTAAAAAGT
GCATTGCAATGTCTTCATAAAATCTTTGTTTTTGTTTAGAAAATTCGAAA
GAGGAAAAATGGTAGCTGCAACCAGAGGTGAAAATTGCAGTGGAGGTGGT
TCTACCATGAATATTTTCAAAAAACTTTTTAATGGAATAACTGCATTGAA
AAGTGGAATTCGTAATCGAAAAAATGATGGACCTATGCTTAGTGGGATCT
CTGGATTTGACTCAGATAGTGATGATGATTGTGAAAATGAGTTTGTTTAC
ACAGATCGTAGGGAGGAAATGATGCTTTTGGATGCCAAATTTGGATCGAA
TGATACTCACTTGCCAATTATTCAACAACATTTACAGCCACGAAATAATC
AATTAGACTATCTTGGCCACGGTGGTTTTAGTATTGTCAAAAAATGCTGG
TCAGAGAAACACGATACCGATGTAGCTATCAAGATTATTTTAATGGACAA
GGAAAATAATAACTTATATTTGCAAAAATATTTACCTCGGGAACTTGAAA
TTTGGGGTGAGATATCAAAGTTTCAGAACCAAAATATATTGAGAATGATA
GACAATTTTATTGGGACTGGATTCACGTATGTTGTTATGGACGTAGTAGA
TAATGGTGATCTATCAACTCTAATGAAATTTGGAGCCTTGACTGAACATA
AATCTAGATCTATATTTCGAGGACTTTTTGAAGCTGTTCATTTTCTGCAT
AAATTGGGAATCGCTCACCGTGATATAAAACCTGAAAATTTGCTTCTGAC
CAAAAGAAATGAAGTTAAATTGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009022XLOC_009022Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016162-proteinTCONS_00016162-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016162-exon-sc0000226-1575043694:395345..396127TCONS_00016162-exon-sc0000226-1575043694:395345..396127Clytia hemisphaericaexon
TCONS_00016162-exon-sc0000226-1575043694:394158..394800TCONS_00016162-exon-sc0000226-1575043694:394158..394800Clytia hemisphaericaexon
TCONS_00016162-exon-sc0000226-1510915933:395345..396127TCONS_00016162-exon-sc0000226-1510915933:395345..396127Clytia hemisphaericaexon
TCONS_00016162-exon-sc0000226-1510915933:394158..394800TCONS_00016162-exon-sc0000226-1510915933:394158..394800Clytia hemisphaericaexon
TCONS_00016162-exon-sc0000226-1491911889:395345..396127TCONS_00016162-exon-sc0000226-1491911889:395345..396127Clytia hemisphaericaexon
TCONS_00016162-exon-sc0000226-1491911889:394158..394800TCONS_00016162-exon-sc0000226-1491911889:394158..394800Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:394158..396127 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.833	7.78916	8.38382	10.2044	4.32441	3.01336	3.93532	4.28069	1.6459	6.78556	2.1265	1.96091	26.3482	20.497	13.6234	15.0108	7.98771	11.9106	6.04286	7.68538	3.97417	5.19673	15.576	12.7326	28.9516	31.6488	10.6728	9.38524	27.794	26.4716
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00016162 vs. Swiss-Prot (Human)
Match: TSSK1 (Testis-specific serine/threonine-protein kinase 1 OS=Homo sapiens GN=TSSK1B PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.832e-39
Identity = 93/269 (34.57%), Postives = 146/269 (54.28%), Query Frame = 3 
Query:  369 LGHGGFSIVKKCWSEKHDTDVAIKIILMDKENNNLYLQKYLPRELEIWGEISKFQNQNILRMIDNF-IGTGFTYVVMDVVDNGDLSTLMKF-GALTEHKSRSIFRGLFEAVHFLHKLGIAHRDIKPENLLLTKRNEVKLADFTF---VTKDN----PVSSERCGTPGFLAPEQRDCGYYDPFKSDMWQVGLTLYYMFFGDMPFTSSRKKHLIDEIASCRNKYRNVPMPTGRMLSKDAKDLVAGMLQLEIDNRWNIQHVKASYWLNPTER 1148
            LG G ++ VK  +SE+   +VAIKII   K   + +L+K+LPRE+EI   ++   + +I++  + F    G  Y+VM++   GDL  L+K  GAL E ++R  F  L  A+ + H L + HRD+K +NLLL K   +KL+DF+F     +D+     +S   CG+P + APE      Y P   D+W +G+ LY M  G MP+  S  K ++        K   V  P  + L+ + KDL+  MLQ +++ R +I  + +  W+ P  R
Sbjct:   18 LGEGSYAKVKSAYSERLKFNVAIKIIDRKKAPAD-FLEKFLPREIEI---LAMLNHCSIIKTYEIFETSHGKVYIVMELAVQGDLLELIKTRGALHEDEARKKFHQLSLAIKYCHDLDVVHRDLKCDNLLLDKDFNIKLSDFSFSKRCLRDDSGRMALSKTFCGSPAYAAPEVLQGIPYQPKVYDIWSLGVILYIMVCGSMPYDDSNIKKMLR-----IQKEHRVNFPRSKHLTGECKDLIYHMLQPDVNRRLHIDEILSHCWMQPKAR 277
The following BLAST results are available for this feature:
BLAST of TCONS_00016162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSSK14.832e-3934.57Testis-specific serine/threonine-protein kinase 1 ... [more]
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