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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016177 ID=TCONS_00016177|Name=TCONS_00016177|organism=Clytia hemisphaerica|type=transcript|length=840bp
AAAACGAATTCATCACATAATATTACAAACAATGGTCAAAATTCTGATCC
ACCCGACCAACTTGAGCTCCAAGACATCTCCtaccaaagtttgaaaattc
taGAAAAAGCCTCAAATAACCCTTTGAATAAAACCTTGATCCAAAGCAAA
ATGAATTACAACTTAGACAATGATGAAGAGCGCAAATTGAATAAATCAAG
GTCAGCTCCAACAACAGTCAAAAGCAAATCGACACAAAACCTTACTTTTG
TTGAAAAtaacatttcaaatcaaacacaAGCCCAAGACAACGTTTCTGAA
AATGCATCAACCAAGCAAAATAATCCAATCTACAATTCTACTGCAACCAA
TAATAATACTGAAAATTCAAGAACAAAAAGCATAGTAATTGGTGATCGAA
GAGGTATAGTTGTCCCTAAAGACCCTATTCCTCCTATAAGCACTCTTATG
GAGGATGTGGAATACCCAGATAAAATCCCTCCAATAAAAATGGACAAGAA
GGATATACCTATGAAGGATAGTGGGAAAGATTCATTTGATAAAGCGCCCC
CTATCGAACCTATCGATGTGGGTCGAATAAAGAGCCGACTACTCGAGGAA
ACAATTCAACCGAACGAACCGATTGAAATGCAAGACTCGATGATTGAATC
AAACCCACCTATTGAGCCCATACCTCCAATAGAATGAGAGTCGACAAAAT
CATCCTAGGTCATTTCACGGTCGTAATAAATTATGGTTAATCAGGATTGA
TTGCGCCTTTGTAACGGCTTCcagttggctagacgcaaaaaccTCCAAAA
TTTTGGACAAACAGAAAATCGTTAGGAGCGCGGTAGTCTG Run BLAST on NCBI protein sequence of TCONS_00016177-protein >TCONS_00016177-protein ID=TCONS_00016177-protein|Name=TCONS_00016177-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
KTNSSHNITNNGQNSDPPDQLELQDISYQSLKILEKASNNPLNKTLIQSK
MNYNLDNDEERKLNKSRSAPTTVKSKSTQNLTFVENNISNQTQAQDNVSE
NASTKQNNPIYNSTATNNNTENSRTKSIVIGDRRGIVVPKDPIPPISTLM
EDVEYPDKIPPIKMDKKDIPMKDSGKDSFDKAPPIEPIDVGRIKSRLLEE
TIQPNEPIEMQDSMIESNPPIEPIPPIE Run BLAST on NCBI transcript from alignment at sc0000226:235555..236394 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016177 ID=TCONS_00016177|Name=TCONS_00016177|organism=Clytia hemisphaerica|type=transcript|length=840bp|location=Sequence derived from alignment at sc0000226:235555..236394 (Clytia hemisphaerica)
CAGACTACCGCGCTCCTAACGATTTTCTGTTTGTCCAAAATTTTGGAggt
ttttgcgtctagccaactgGAAGCCGTTACAAAGGCGCAATCAATCCTGA
TTAACCATAATTTATTACGACCGTGAAATGACCTAGGATGATTTTGTCGA
CTCTCATTCTATTGGAGGTATGGGCTCAATAGGTGGGTTTGATTCAATCA
TCGAGTCTTGCATTTCAATCGGTTCGTTCGGTTGAATTGTTTCCTCGAGT
AGTCGGCTCTTTATTCGACCCACATCGATAGGTTCGATAGGGGGCGCTTT
ATCAAATGAATCTTTCCCACTATCCTTCATAGGTATATCCTTCTTGTCCA
TTTTTATTGGAGGGATTTTATCTGGGTATTCCACATCCTCCATAAGAGTG
CTTATAGGAGGAATAGGGTCTTTAGGGACAACTATACCTCTTCGATCACC
AATTACTATGCTTTTTGTTCTTGAATTTTCAGTATTATTATTGGTTGCAG
TAGAATTGTAGATTGGATTATTTTGCTTGGTTGATGCATTTTCAGAAACG
TTGTCTTGGGCTtgtgtttgatttgaaatgttaTTTTCAACAAAAGTAAG
GTTTTGTGTCGATTTGCTTTTGACTGTTGTTGGAGCTGACCTTGATTTAT
TCAATTTGCGCTCTTCATCATTGTCTAAGTTGTAATTCATTTTGCTTTGG
ATCAAGGTTTTATTCAAAGGGTTATTTGAGGCTTTTTCtagaattttcaa
actttggtaGGAGATGTCTTGGAGCTCAAGTTGGTCGGGTGGATCAGAAT
TTTGACCATTGTTTGTAATATTATGTGATGAATTCGTTTT Coding sequence (CDS) from alignment at sc0000226:235555..236394 >TCONS_00016177 ID=TCONS_00016177|Name=TCONS_00016177|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at sc0000226:235555..236394 (Clytia hemisphaerica)
TCATTCTATTGGAGGTATGGGCTCAATAGGTGGGTTTGATTCAATCATCG
AGTCTTGCATTTCAATCGGTTCGTTCGGTTGAATTGTTTCCTCGAGTAGT
CGGCTCTTTATTCGACCCACATCGATAGGTTCGATAGGGGGCGCTTTATC
AAATGAATCTTTCCCACTATCCTTCATAGGTATATCCTTCTTGTCCATTT
TTATTGGAGGGATTTTATCTGGGTATTCCACATCCTCCATAAGAGTGCTT
ATAGGAGGAATAGGGTCTTTAGGGACAACTATACCTCTTCGATCACCAAT
TACTATGCTTTTTGTTCTTGAATTTTCAGTATTATTATTGGTTGCAGTAG
AATTGTAGATTGGATTATTTTGCTTGGTTGATGCATTTTCAGAAACGTTG
TCTTGGGCTtgtgtttgatttgaaatgttaTTTTCAACAAAAGTAAGGTT
TTGTGTCGATTTGCTTTTGACTGTTGTTGGAGCTGACCTTGATTTATTCA
ATTTGCGCTCTTCATCATTGTCTAAGTTGTAATTCATTTTGCTTTGGATC
AAGGTTTTATTCAAAGGGTTATTTGAGGCTTTTTCtagaattttcaaact
ttggtaGGAGATGTCTTGGAGCTCAAGTTGGTCGGGTGGATCAGAATTTT
GACCATTGTTTGTAATATTATGTGATGAATTCGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016177-exon-sc0000226-1491911889:235555..236394 | TCONS_00016177-exon-sc0000226-1491911889:235555..236394 | Clytia hemisphaerica | exon |
| TCONS_00016177-exon-sc0000226-1510915933:235555..236394 | TCONS_00016177-exon-sc0000226-1510915933:235555..236394 | Clytia hemisphaerica | exon |
| TCONS_00016177-exon-sc0000226-1575043694:235555..236394 | TCONS_00016177-exon-sc0000226-1575043694:235555..236394 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000226 | supercontig | sc0000226:235555..236394 . |
Blast
The following BLAST results are available for this feature:
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