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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016179 ID=TCONS_00016179|Name=TCONS_00016179|organism=Clytia hemisphaerica|type=transcript|length=1160bp
GGACCCTGTGTCTCTTGTCAGGGAAGATTGATTCCTTTAGGGGATCAGAC
AGGATGCTTCGATCCTTACAAAGAACTGCGTATGAAGTTGACCGATACTA
AAGTCATGTTGAGTTTAGCATTTTCACTGGTTAGCCTTTTCTTGACAGTT
TTCACTCTTTTCGTGTTGGTTTTACATCGAAACACACCTATAGGGCGAAT
AATTGATTTCAAAACTTCCATATCACAACTGGGAGTTATATCTATATTTT
TATGTGGTGTGCCTTTTGTATTGTTACTTGATCGTACACTTGAGATATGT
ATATTACGTATCTCGATCATCTGTCCGGTCTACACCGTAATCACTTCAAT
TATACTGATCAAATCTCAGAAAATTTTGACCGCTTTCAATGCGCGTGTAC
GCATCAGCAAACGAGAACATTTTGTGACTTCCATAAAGCAAGTTGCATTG
GTTGCTTGTTTATCATCGGCAAGTTTTCTTATATTCGGTTTGGTGTTATT
ATTTGATTATCCTCGAATTGAAATGATAGCTTACGAAGCAGAATTATGTA
CTGAAAGACATTGCTTGAATATTCTACATGTGAGGTTTCAAGTGATATTT
TTCATCTCAATCCATTTGGCATGTATTATCCCTGCTTATCGAGGACGAAA
CTTACCAAGCCTTTTCAATGAAGCCACACCCATTATCTACCTAAGTTTTA
TCTCCATAATGTCATTTTTTGTATTGCTGGGGATTGAACCATTTCAAATA
CATCAATATAGCAAGGATGTGACTTTATGGGTAGTAACAACGAATAACTG
TATTTGTGTTTTGTTGCTTTTGTACGGGAAAAagatttatattatatttt
tcaaaccaGAGAAGAACACGAAGGATTACTTGAAAAGTCAGACACTTGCT
TCGATGGCGAAACGAACAAATAAGCGGATGGCTCGACGTGTTCTGATGTT
GGGTAAAATAAATATGGCAAATAGAAAATAATATTAGATGGTATCCGGAA
ACATGCACCGAAAGACAGAATCGGAAAAATGTTAAGGGTTAATTTGAAGT
TAAtctctttatttctaattttgcaAGTTTCCTAGAATCCTTTTGTCAAA
TGAAATcccatttcaaagattttatatGTTTTAGTATCCGTTAAAAATAG
AAGTATCATA Run BLAST on NCBI protein sequence of TCONS_00016179-protein >TCONS_00016179-protein ID=TCONS_00016179-protein|Name=TCONS_00016179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
GPCVSCQGRLIPLGDQTGCFDPYKELRMKLTDTKVMLSLAFSLVSLFLTV
FTLFVLVLHRNTPIGRIIDFKTSISQLGVISIFLCGVPFVLLLDRTLEIC
ILRISIICPVYTVITSIILIKSQKILTAFNARVRISKREHFVTSIKQVAL
VACLSSASFLIFGLVLLFDYPRIEMIAYEAELCTERHCLNILHVRFQVIF
FISIHLACIIPAYRGRNLPSLFNEATPIIYLSFISIMSFFVLLGIEPFQI
HQYSKDVTLWVVTTNNCICVLLLLYGKKIYIIFFKPEKNTKDYLKSQTLA
SMAKRTNKRMARRVLMLGKINMANRK Run BLAST on NCBI transcript from alignment at sc0000226:269557..270716 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016179 ID=TCONS_00016179|Name=TCONS_00016179|organism=Clytia hemisphaerica|type=transcript|length=1160bp|location=Sequence derived from alignment at sc0000226:269557..270716 (Clytia hemisphaerica)
TATGATACTTCTATTTTTAACGGATACTAAAACatataaaatctttgaaa
tgggATTTCATTTGACAAAAGGATTCTAGGAAACTtgcaaaattagaaat
aaagagaTTAACTTCAAATTAACCCTTAACATTTTTCCGATTCTGTCTTT
CGGTGCATGTTTCCGGATACCATCTAATATTATTTTCTATTTGCCATATT
TATTTTACCCAACATCAGAACACGTCGAGCCATCCGCTTATTTGTTCGTT
TCGCCATCGAAGCAAGTGTCTGACTTTTCAAGTAATCCTTCGTGTTCTTC
TCtggtttgaaaaatataatataaatctTTTTCCCGTACAAAAGCAACAA
AACACAAATACAGTTATTCGTTGTTACTACCCATAAAGTCACATCCTTGC
TATATTGATGTATTTGAAATGGTTCAATCCCCAGCAATACAAAAAATGAC
ATTATGGAGATAAAACTTAGGTAGATAATGGGTGTGGCTTCATTGAAAAG
GCTTGGTAAGTTTCGTCCTCGATAAGCAGGGATAATACATGCCAAATGGA
TTGAGATGAAAAATATCACTTGAAACCTCACATGTAGAATATTCAAGCAA
TGTCTTTCAGTACATAATTCTGCTTCGTAAGCTATCATTTCAATTCGAGG
ATAATCAAATAATAACACCAAACCGAATATAAGAAAACTTGCCGATGATA
AACAAGCAACCAATGCAACTTGCTTTATGGAAGTCACAAAATGTTCTCGT
TTGCTGATGCGTACACGCGCATTGAAAGCGGTCAAAATTTTCTGAGATTT
GATCAGTATAATTGAAGTGATTACGGTGTAGACCGGACAGATGATCGAGA
TACGTAATATACATATCTCAAGTGTACGATCAAGTAACAATACAAAAGGC
ACACCACATAAAAATATAGATATAACTCCCAGTTGTGATATGGAAGTTTT
GAAATCAATTATTCGCCCTATAGGTGTGTTTCGATGTAAAACCAACACGA
AAAGAGTGAAAACTGTCAAGAAAAGGCTAACCAGTGAAAATGCTAAACTC
AACATGACTTTAGTATCGGTCAACTTCATACGCAGTTCTTTGTAAGGATC
GAAGCATCCTGTCTGATCCCCTAAAGGAATCAATCTTCCCTGACAAGAGA
CACAGGGTCC Coding sequence (CDS) from alignment at sc0000226:269557..270716 >TCONS_00016179 ID=TCONS_00016179|Name=TCONS_00016179|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at sc0000226:269557..270716 (Clytia hemisphaerica)
TTATTTTCTATTTGCCATATTTATTTTACCCAACATCAGAACACGTCGAG
CCATCCGCTTATTTGTTCGTTTCGCCATCGAAGCAAGTGTCTGACTTTTC
AAGTAATCCTTCGTGTTCTTCTCtggtttgaaaaatataatataaatctT
TTTCCCGTACAAAAGCAACAAAACACAAATACAGTTATTCGTTGTTACTA
CCCATAAAGTCACATCCTTGCTATATTGATGTATTTGAAATGGTTCAATC
CCCAGCAATACAAAAAATGACATTATGGAGATAAAACTTAGGTAGATAAT
GGGTGTGGCTTCATTGAAAAGGCTTGGTAAGTTTCGTCCTCGATAAGCAG
GGATAATACATGCCAAATGGATTGAGATGAAAAATATCACTTGAAACCTC
ACATGTAGAATATTCAAGCAATGTCTTTCAGTACATAATTCTGCTTCGTA
AGCTATCATTTCAATTCGAGGATAATCAAATAATAACACCAAACCGAATA
TAAGAAAACTTGCCGATGATAAACAAGCAACCAATGCAACTTGCTTTATG
GAAGTCACAAAATGTTCTCGTTTGCTGATGCGTACACGCGCATTGAAAGC
GGTCAAAATTTTCTGAGATTTGATCAGTATAATTGAAGTGATTACGGTGT
AGACCGGACAGATGATCGAGATACGTAATATACATATCTCAAGTGTACGA
TCAAGTAACAATACAAAAGGCACACCACATAAAAATATAGATATAACTCC
CAGTTGTGATATGGAAGTTTTGAAATCAATTATTCGCCCTATAGGTGTGT
TTCGATGTAAAACCAACACGAAAAGAGTGAAAACTGTCAAGAAAAGGCTA
ACCAGTGAAAATGCTAAACTCAACATGACTTTAGTATCGGTCAACTTCAT
ACGCAGTTCTTTGTAAGGATCGAAGCATCCTGTCTGATCCCCTAAAGGAA
TCAATCTTCCCTGACAAGAGACACAGGGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016179-exon-sc0000226-1491911889:269557..270716 | TCONS_00016179-exon-sc0000226-1491911889:269557..270716 | Clytia hemisphaerica | exon |
| TCONS_00016179-exon-sc0000226-1510915933:269557..270716 | TCONS_00016179-exon-sc0000226-1510915933:269557..270716 | Clytia hemisphaerica | exon |
| TCONS_00016179-exon-sc0000226-1575043694:269557..270716 | TCONS_00016179-exon-sc0000226-1575043694:269557..270716 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000226 | supercontig | sc0000226:269557..270716 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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