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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016180 ID=TCONS_00016180|Name=TCONS_00016180|organism=Clytia hemisphaerica|type=transcript|length=1439bp
AATCAATGTTACGCAATCATACCTTTTATCCTTTGGGCAGCTTTAATTCA
AGTCGATTCCCAAAGAATAGAGCAACAACCTTTCCGAATTATTGGAATAT
ATTCTCTATGCAACAAACGACCCTACATTAATCAAACATTTGATAACACC
AGAGCTGAGATATTCCACCAATCTTTTTTATCATGGCTTCATATAGATAT
TCCGAGTCATTCCGAGTTATTCAAACTTTATCCAGGTGTAACTAGATTCG
ATGAACTTATAAACTACGAATATTACGATGTTTGTGACCATTCAGAATTA
TTATCCAAGGTTATCAGCGATGTTTTTCTTGATATCAAGTACAGTCAAAA
TATGACTAACAGTAACGTGTACCATGCTGCAGATACTAATATCGTACTCG
TGTTATCTTACCTTGATCAAATAGAGGAAGTTCTGCTTGATGGTTTATTG
GAAATGGAGCGTGTCTTTCCATTGGTGGTTTTAAACCCGACCAATCAACG
ACATCTCTTTGATTATCATCAAGAATCGGCTCAATCAATATCTATAATAA
AATCCAATATAGAAAACCTCAAAAATCAGTTCGAATACTTTCAATGGAAG
CATGTAGGTCTTATAGCTTTAATACAACATAAAGATTGTATATATTatga
ttattttgaagactttttaaagtatCTACATCAAtcgaaaaatatttgtt
tctttgCTCAATATGTGAACACGTCTGCAGTGGGTTTCAATATGAGCACT
GCGATACAGAATCTCAAACAGGAACTGGATGTCAAcgttaccattttatt
tggtcaTCCGAACATGCAGTACCGATTCATTAAAGCTGTGACTGGCGATT
CCCCGATCCAGGGAAATCGCAGGATTTGGGTGTCCCATGAAATCCCATAT
GTACCTCACGATTTCACCGATGTCAATTACTTTATATCCAACCTAAACAA
TGTGCGTAGAGAACGTTTTGCCAATTCACGGATCATCAAAACTTTCCTTA
ATAATTCACACCTACAAAAAGCTGCAATATTTGAAATGCCACCGTATCGA
AACGAAGATGAATCGGAGAAACGAAAGCGAGAAACCTATCAAGAAAGTAT
AGGGCTATTTAAACGAATCATGAAAGTTATTTATCAAAACAGACATGGCA
GCAAGACCTTAAGACTGTATAAACGAGTTTGTCTCTTCTTGAGAAGTACA
GTCTGGCAATATTATAGAACGCACCTATTGGTGAAAATTCAACGTTTTGA
AAGTACATTTTCGGCACCTTCAGATCTTTACCATAACATTAATCCTGATA
ATGAAAATAACTTAGAACTGGCAAGTTTCAAACCTAGACTAAGAAGCCCT
AAGTGTTACAGCATAGTCTGTCAACCAGGGAAAACCAAAGTATTTGGTCA
AATTCTGAGACAGAGAACCAAATGGAGGTACCATTATGG Run BLAST on NCBI protein sequence of TCONS_00016180-protein >TCONS_00016180-protein ID=TCONS_00016180-protein|Name=TCONS_00016180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
NQCYAIIPFILWAALIQVDSQRIEQQPFRIIGIYSLCNKRPYINQTFDNT
RAEIFHQSFLSWLHIDIPSHSELFKLYPGVTRFDELINYEYYDVCDHSEL
LSKVISDVFLDIKYSQNMTNSNVYHAADTNIVLVLSYLDQIEEVLLDGLL
EMERVFPLVVLNPTNQRHLFDYHQESAQSISIIKSNIENLKNQFEYFQWK
HVGLIALIQHKDCIYYDYFEDFLKYLHQSKNICFFAQYVNTSAVGFNMST
AIQNLKQELDVNVTILFGHPNMQYRFIKAVTGDSPIQGNRRIWVSHEIPY
VPHDFTDVNYFISNLNNVRRERFANSRIIKTFLNNSHLQKAAIFEMPPYR
NEDESEKRKRETYQESIGLFKRIMKVIYQNRHGSKTLRLYKRVCLFLRST
VWQYYRTHLLVKIQRFESTFSAPSDLYHNINPDNENNLELASFKPRLRSP
KCYSIVCQPGKTKVFGQILRQRTKWRYHY Run BLAST on NCBI transcript from alignment at sc0000226:270769..272207 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016180 ID=TCONS_00016180|Name=TCONS_00016180|organism=Clytia hemisphaerica|type=transcript|length=1439bp|location=Sequence derived from alignment at sc0000226:270769..272207 (Clytia hemisphaerica)
CCATAATGGTACCTCCATTTGGTTCTCTGTCTCAGAATTTGACCAAATAC
TTTGGTTTTCCCTGGTTGACAGACTATGCTGTAACACTTAGGGCTTCTTA
GTCTAGGTTTGAAACTTGCCAGTTCTAAGTTATTTTCATTATCAGGATTA
ATGTTATGGTAAAGATCTGAAGGTGCCGAAAATGTACTTTCAAAACGTTG
AATTTTCACCAATAGGTGCGTTCTATAATATTGCCAGACTGTACTTCTCA
AGAAGAGACAAACTCGTTTATACAGTCTTAAGGTCTTGCTGCCATGTCTG
TTTTGATAAATAACTTTCATGATTCGTTTAAATAGCCCTATACTTTCTTG
ATAGGTTTCTCGCTTTCGTTTCTCCGATTCATCTTCGTTTCGATACGGTG
GCATTTCAAATATTGCAGCTTTTTGTAGGTGTGAATTATTAAGGAAAGTT
TTGATGATCCGTGAATTGGCAAAACGTTCTCTACGCACATTGTTTAGGTT
GGATATAAAGTAATTGACATCGGTGAAATCGTGAGGTACATATGGGATTT
CATGGGACACCCAAATCCTGCGATTTCCCTGGATCGGGGAATCGCCAGTC
ACAGCTTTAATGAATCGGTACTGCATGTTCGGAtgaccaaataaaatggt
aacgTTGACATCCAGTTCCTGTTTGAGATTCTGTATCGCAGTGCTCATAT
TGAAACCCACTGCAGACGTGTTCACATATTGAGcaaagaaacaaatattt
ttcgaTTGATGTAGatactttaaaaagtcttcaaaataatcatAATATAT
ACAATCTTTATGTTGTATTAAAGCTATAAGACCTACATGCTTCCATTGAA
AGTATTCGAACTGATTTTTGAGGTTTTCTATATTGGATTTTATTATAGAT
ATTGATTGAGCCGATTCTTGATGATAATCAAAGAGATGTCGTTGATTGGT
CGGGTTTAAAACCACCAATGGAAAGACACGCTCCATTTCCAATAAACCAT
CAAGCAGAACTTCCTCTATTTGATCAAGGTAAGATAACACGAGTACGATA
TTAGTATCTGCAGCATGGTACACGTTACTGTTAGTCATATTTTGACTGTA
CTTGATATCAAGAAAAACATCGCTGATAACCTTGGATAATAATTCTGAAT
GGTCACAAACATCGTAATATTCGTAGTTTATAAGTTCATCGAATCTAGTT
ACACCTGGATAAAGTTTGAATAACTCGGAATGACTCGGAATATCTATATG
AAGCCATGATAAAAAAGATTGGTGGAATATCTCAGCTCTGGTGTTATCAA
ATGTTTGATTAATGTAGGGTCGTTTGTTGCATAGAGAATATATTCCAATA
ATTCGGAAAGGTTGTTGCTCTATTCTTTGGGAATCGACTTGAATTAAAGC
TGCCCAAAGGATAAAAGGTATGATTGCGTAACATTGATT Coding sequence (CDS) from alignment at sc0000226:270769..272207 >TCONS_00016180 ID=TCONS_00016180|Name=TCONS_00016180|organism=Clytia hemisphaerica|type=CDS|length=1437bp|location=Sequence derived from alignment at sc0000226:270769..272207 (Clytia hemisphaerica)
ATAATGGTACCTCCATTTGGTTCTCTGTCTCAGAATTTGACCAAATACTT
TGGTTTTCCCTGGTTGACAGACTATGCTGTAACACTTAGGGCTTCTTAGT
CTAGGTTTGAAACTTGCCAGTTCTAAGTTATTTTCATTATCAGGATTAAT
GTTATGGTAAAGATCTGAAGGTGCCGAAAATGTACTTTCAAAACGTTGAA
TTTTCACCAATAGGTGCGTTCTATAATATTGCCAGACTGTACTTCTCAAG
AAGAGACAAACTCGTTTATACAGTCTTAAGGTCTTGCTGCCATGTCTGTT
TTGATAAATAACTTTCATGATTCGTTTAAATAGCCCTATACTTTCTTGAT
AGGTTTCTCGCTTTCGTTTCTCCGATTCATCTTCGTTTCGATACGGTGGC
ATTTCAAATATTGCAGCTTTTTGTAGGTGTGAATTATTAAGGAAAGTTTT
GATGATCCGTGAATTGGCAAAACGTTCTCTACGCACATTGTTTAGGTTGG
ATATAAAGTAATTGACATCGGTGAAATCGTGAGGTACATATGGGATTTCA
TGGGACACCCAAATCCTGCGATTTCCCTGGATCGGGGAATCGCCAGTCAC
AGCTTTAATGAATCGGTACTGCATGTTCGGAtgaccaaataaaatggtaa
cgTTGACATCCAGTTCCTGTTTGAGATTCTGTATCGCAGTGCTCATATTG
AAACCCACTGCAGACGTGTTCACATATTGAGcaaagaaacaaatattttt
cgaTTGATGTAGatactttaaaaagtcttcaaaataatcatAATATATAC
AATCTTTATGTTGTATTAAAGCTATAAGACCTACATGCTTCCATTGAAAG
TATTCGAACTGATTTTTGAGGTTTTCTATATTGGATTTTATTATAGATAT
TGATTGAGCCGATTCTTGATGATAATCAAAGAGATGTCGTTGATTGGTCG
GGTTTAAAACCACCAATGGAAAGACACGCTCCATTTCCAATAAACCATCA
AGCAGAACTTCCTCTATTTGATCAAGGTAAGATAACACGAGTACGATATT
AGTATCTGCAGCATGGTACACGTTACTGTTAGTCATATTTTGACTGTACT
TGATATCAAGAAAAACATCGCTGATAACCTTGGATAATAATTCTGAATGG
TCACAAACATCGTAATATTCGTAGTTTATAAGTTCATCGAATCTAGTTAC
ACCTGGATAAAGTTTGAATAACTCGGAATGACTCGGAATATCTATATGAA
GCCATGATAAAAAAGATTGGTGGAATATCTCAGCTCTGGTGTTATCAAAT
GTTTGATTAATGTAGGGTCGTTTGTTGCATAGAGAATATATTCCAATAAT
TCGGAAAGGTTGTTGCTCTATTCTTTGGGAATCGACTTGAATTAAAGCTG
CCCAAAGGATAAAAGGTATGATTGCGTAACATTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016180-exon-sc0000226-1491911889:270769..272207 | TCONS_00016180-exon-sc0000226-1491911889:270769..272207 | Clytia hemisphaerica | exon |
| TCONS_00016180-exon-sc0000226-1510915933:270769..272207 | TCONS_00016180-exon-sc0000226-1510915933:270769..272207 | Clytia hemisphaerica | exon |
| TCONS_00016180-exon-sc0000226-1575043694:270769..272207 | TCONS_00016180-exon-sc0000226-1575043694:270769..272207 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000226 | supercontig | sc0000226:270769..272207 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028082 | Peripla_BP_I |
Blast
The following BLAST results are available for this feature:
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