TCONS_00016185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016185
Unique NameTCONS_00016185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016185 ID=TCONS_00016185|Name=TCONS_00016185|organism=Clytia hemisphaerica|type=transcript|length=347bp
AGATCATCTCGAAGAATGTTTGAATTGCGAGATCTGTGTAtgttttttgt
gtgtaaatGTTGAATTTAATTTATGAAACACGATCACAGCTTTCGTAGAT
ATTATTTGGTGAGAGTGACACATAGTAACGGTTCTATTTCATGCTGTTAC
CCGGCTGTTTTTGTATCAGTAGTATTTCGTTAAGCTGGAAGGTGAATGGA
ATCTTTTCTGAACGATCGAAGGTTTTCAAACTTCTCCTCTGTTGTATTTG
TCGGTAAACATACTCGATATCTAACGGGaacttcaaaattcattgccgta
cgCTACGTTATACGTGAGACACACTCTGGCATAGAGTACTGTAGTAC
Run BLAST on NCBI

transcript from alignment at sc0000226:397219..397565

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016185 ID=TCONS_00016185|Name=TCONS_00016185|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at sc0000226:397219..397565 (Clytia hemisphaerica)
GTACTACAGTACTCTATGCCAGAGTGTGTCTCACGTATAACGTAGcgtac
ggcaatgaattttgaagttCCCGTTAGATATCGAGTATGTTTACCGACAA
ATACAACAGAGGAGAAGTTTGAAAACCTTCGATCGTTCAGAAAAGATTCC
ATTCACCTTCCAGCTTAACGAAATACTACTGATACAAAAACAGCCGGGTA
ACAGCATGAAATAGAACCGTTACTATGTGTCACTCTCACCAAATAATATC
TACGAAAGCTGTGATCGTGTTTCATAAATTAAATTCAACatttacacaca
aaaaacaTACACAGATCTCGCAATTCAAACATTCTTCGAGATGATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009045XLOC_009045Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016185-exon-sc0000226-1491911889:397219..397565TCONS_00016185-exon-sc0000226-1491911889:397219..397565Clytia hemisphaericaexon
TCONS_00016185-exon-sc0000226-1510915933:397219..397565TCONS_00016185-exon-sc0000226-1510915933:397219..397565Clytia hemisphaericaexon
TCONS_00016185-exon-sc0000226-1575043694:397219..397565TCONS_00016185-exon-sc0000226-1575043694:397219..397565Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:397219..397565 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.291084	0	0.693386	0.547923	0.330523	0.928294	0.21664	0.536688	0.781383	0.856084	1.02587	0.887816	1.75177	0.93996	0.578977	2.17592	0	0.571949	0.745692	0.727444	1.17907	1.33993	4.1403	1.23171	0.352514	0	0.285344	1.16288
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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