TCONS_00016202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016202
Unique NameTCONS_00016202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3755

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016202 ID=TCONS_00016202|Name=TCONS_00016202|organism=Clytia hemisphaerica|type=transcript|length=3755bp
CTTACGGTATACAATCATCAAAGTGTATGCATCTTCTGCAACAAGCGAAT
CGTGTGGGACGTGTTGACGTTTTCGTCCAATCAACAGATAAGAATTTCAT
GGTGCCTGTCGGGGGTTCGATTATCGCTGGTTTCGATAAACAACTAATTC
AAGATATCGGGAAAATGTACCCAGGTCGAGCCTCAGCTAGCCCAATTATC
GATTTTTTCATCACTATGCTCTCACTTGGTGCCAACGGATATAAGAAGTT
GCTGCAAGAACGAAAGGAACTCTATCAATATTTACACGACGGTATGAAGC
GTATAGCAAAACAATTCAACGAGACCGTCATCCCAGCCAAAGAAAATACC
ATATCAATAGCTCTGTCACTGCGCTCTCTGGACGAGAGATGTGACGGGCA
AAAAAAATCCATCACAGAATTTGGTTCTCATCTTTTCAAAAGATCCGTCT
CAGGAACGAGAGTTGTCACACCCAATGACGAAAAGACGATCGGTCGTTAC
CAGTTTATTGGTTGGGGTGCACATTATAGTAATTACCCATGCTCCTATTT
AACCGCCGCTGCTGCCATTGGCGCCACACGACAAGACATCGACCTCTTCC
TTAAAAGGCTTGAAAAGAATTTTAAAGACTTCTTAAAAGAACCAAGTAAG
AAAGTCTCTTCGTCTAAGAAAGAAACTGATAAATCGGCCACCGTAAAATT
GAACGGGGTCTCgcctactactactactactacgtCGACTAACGGCGGAC
TTATCGAGACTTCGTTTTCGTCATCGTTACCACGAACTAGAACTGAAGTG
CCGAGAGCGCTCGCGAAAAACCCTTTGCGCGTGATAAATTCATGTGGCGT
GGAGGGAGATACAAGTAAAACATGGCCGAAACAATCAAAAGAATATGCTA
TGGATGATAGTGCAATACAGAAAAAACGTAACCAATGGTTTAATAACGTT
GACGGGAAACGTAAATCCCAATCAACTACTTCAGTTGATGAACGCGCCCA
AGCCGTTCGGGAAGAGCGCACACAGCAGGTAATCACGAAAAAAGACTTAT
CTCCAGATAAgatgtcatttttaattgatttatagtgaaagttattactt
ttttatcaagctaaattatttaatttttactATATGAAATTTTGATTCTT
ATCTTAAGATGtattcactgacctttatatacccttttgggttatcgaga
cctcaaattttttgaagcatcacgtccactgacctttatataccctggac
caagcttctcaatcccagccaagcaaaatctttgatcggagttttttgaa
aagtggtaccctaatggcggcactactcgatagcggtgtaaatacatcga
gagcgctaggtctacttttcctcaaattcttttgatgatgtagcgacgtt
agacgttaatttttaacattgcaatggcttcttttcgggtaccaattcca
aaaaaactccaatcaaagatggcggatattgcttgttccagggatatata
aaggtcagtggatatattacattttttttattcggTTCGATATTTGTAGC
ATATATTTTGTAGAAAGGTTATATATTAGTGAGATATAATAGTGATTATA
GAATACCGTATTTATCCTAAAAAAATGCGAAATGTTTAATTAAAATCATC
AATTTACAAACATCGATTAACAATCATATTTTTCTACAATTTTTAGTGAT
GATATATGATACGAGTCTATGCTATATACAATAAACAGTGGGGCGTACGG
tccttcggaatttcggaaaacgggcaaaattccttcggtatttcggaact
ctgaaattgtttcggtatcgaaAATcgatgaatttttgcttcgaaatttt
ggtattataaagtttttatcccgccctttttcggaattcgtacatgaaaa
atcaaatttgatgaaaaattagtcaaaacgaaggaaaataccccaaaaaa
tcggtatcggaattgcaagtatttttttacagaatttcggAAGTTTTGGC
AAAATCAtttggtatttcggaaatcgcaaaccccgtacgtcCCCTCCCTA
CACAGTGTTTGGAAATAATTTCGAACACTGGATAAACTTAAAGTTCGAGT
GTAAAAAAGGCTTTAACTCTCAATTCTATGCCCTCGTTACATTGGAGTTA
ACTAGCAATTTCTGTTATTGAATTTAGTCATTTCTGTCTTTAGAGAAGTT
AGCCATTTCTGTGTCAACTTTATTCGAGGTACTATTGACTTCATCATTAA
TTTCCTTTAGAGCAACACCGTTTGTTTCTGGTAAAAAGTAGCAAAGACAT
CCTGCAACGATACCAAGTATACCCATGACGTAATTCGGTAGAGCGATATC
AAATTTTTCTAACCCTTTGGACACCCATGGGGCGCTAGCTCCGCCCACCC
AATTTGAAATTGACATTATGCTGAACGCCTCCGATCGGATATTGGTTGGG
TAAACTTCACAAACAAGAACCTCGATAGTATCGAAGCAAAAAGCGATCCA
GAATTTCCCAAATATGCCAACGAAAACACGAATTACGCGGGTCGTGGTAG
ACGTATCGGGGATAAAAGGGATTATTACGGTCAAGACTCCGCATAGTAAG
ATCGGTATAGCCGTAGATTTCAATCGACCAAATCGGTTAGCTGAGTAAGC
TGAAAGAATAGCTGCAGGGAATTCAACCAAACTGAGCAGAACAAAATTTA
AATGGATGGAACCAGCGCCTAGATTATCAGCTGCTAGTAAGAGGCCGTGA
TAAATCAAAGCTGTCGCATAGAAGCAATAAATTAGGATCACTGTATGGAT
AGCCATTCGTTTGCCATTCCGGAATACATCAATGGGGCTGGTCATTTTAG
CGGCATGTGTACCTGGAGATAACATTACTGTTGGTTCAAGTACCTTCCCA
TTCCAATCTGCCATTCGTCGAAAGATCTCCATAGCCTCGTCCACGCGCCC
TTTTAACCTCAACCAACGCACTGATTCAGGAACAAATTTGTAGCTCAGTA
GAAACGGTAAATAAGGTAGGGTACAAGCGATAATAAAGTACTTCCAGTTA
TCAAGTAAGTACGATTTCAAGGACATCATACAAAGAGCTGCCGTGTATAG
AAACCAGAGCGTGTTACCAGCAATGGCACGATATTTCTCACCTACAGTTT
CATTTAGCGTGACGTAGTAACACGGATGTACGGACGCTACCAAGAAGCCG
GTCATAAATCGGAACACGATAAGCGATGCAATACTCGGCATGAAAATCAA
TAAGAAATTCGTTAAAATAACAAAGAAGAAGCAAACATAAAGAATCTTTT
TCCGCCCAAAATTGTCACTGTACCACCCAAGAAATACGGCGCCAAATACT
CCGCCAACGAAGGTTATTGAGGTGGCAAGGAAAACTAACCAATCATTATC
ACAAGAGAGATCATATTGAACAATAATAGAGTAATCTTTCGGTTGAACAT
ATTCCCAATCTGATCTTGATATTCCACAACGGTATTTATCTTCGTGAGTA
AAAGTCCCATTGAATTGACATGCGGTGCTGTTTGCGGCGCATCTCCACTC
TGGCTTTAAGGCTGCAAAGTACATTACATAGTAGACAAAGAAATAAGGCC
ATAACATAAACGCAAAAATGAGGGTTAGGATTTTCTGGAATTTTCCAAAT
TCACCGACAAATCCTAAGAAATCGTCTACATTTagattatctttttcttt
tccctCCGACATTTTTCTCTTTCCGTGTCTCCAGTACTACTTGTCAGAAT
GAAAT
Run BLAST on NCBI

transcript from alignment at sc0000231:260933..268844+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016202 ID=TCONS_00016202|Name=TCONS_00016202|organism=Clytia hemisphaerica|type=transcript|length=7912bp|location=Sequence derived from alignment at sc0000231:260933..268844+ (Clytia hemisphaerica)
CTTACGGTATACAATCATCAAAGTGTATGCATCTTCTGCAACAAGTAAGA
AGCTGATATTACTTTCAAGTCTAAGTTTTCATAAATTTGGAAATAAAgtt
aagtaagtatattcatgaAATGGCTGTTGGCGGAACCAGAGTTTAACCCC
TTTTCTATTTGTTCTATTTGTAGAGCACCACACCTACTTTCAAAAGTTTC
TCTTGTTTTAAGCATAACTTGATGTGTAGTACACATTCCTATAGATGTGA
AATGAAGAATATTTAATCTTCTCTACCTCTTGACAGGCGAATCGTGTGGG
ACGTGTTGACGTTTTCGTCCAATCAACAGATAAGAATTTCATGGTGCCTG
TCGGGGGTTCGATTATCGCTGGTTTCGATAAACAACTAATTCAAGATATC
GGGAAAATGTACCCAGGTTTGttagatttgttttttttctctctttatcA
TTTCCCATTTTTGTTGCATTTTTGTTGCACTACGTATAGATGAAcgcttt
ctgatttgaagaTTTAGGGAGAGAGTTGATTTTAGTCTTACCATACTAGT
AAGCTATGTTGTGTTTGAAATTTGTATTATGATTTTTAACATGTTTGTTT
GCTTTGGAATCTAATCAAGGTTTGTGACCTTGTTTTCATAAGAGCGCTCT
AAAGACCCTCCTTTTTGGTCACTGTCTACTTACTTAGGTCAACGAATCTC
CTACAGTTTTTACAGTCCTTAACGAAACTGCCAAATCTTAAGTTCTTAAT
CTTAAGTTGCACGGGACAGAGCTGGCCTTGAGATTTGGACGCTAGCCCAC
GAAAAACTCACGTCgtagattccgtacgtaatagatagcttcttgcttaa
cctcgctaataaaCATAGAAACCACCGTGTCAAAATCTGGCTTTTTTGGG
GTGCTTCCGTTAGAAAATACTATAATGTATGTATTACGCGTAACACGAAT
TGCGCTTGTCTTCGTATAGCCATGTCGTAAGATTACCGGTCGAAAGCCTA
ATGAAAATATTGCATGATTTCCAAGGGGAACAGTAAGACCAGCGAAAGGA
TAGAAAAATGTTATTGGGGAAAAGTTCGGTCCTCCTATcgaagagccccc
ccccccccagtcaCTATTCAAATCACGCAATTACGAAGAAAAAATTCcca
aatcacgttatcacgagttaaatttttctttctatcacgatcacgttgat
cACGCTGGTTCCTCTGCTCACGCAATCGTGCACTTTAAAATCTTCAATGA
CGAAATCGCGAACTTGAAAAAACGTCAATCACGCCATCAtgaaaaccgct
gggggccaggggggggtcttgcagttactccttgacactatgtggagtaa
ctgcaattttggacattttctacagacaccaccacccttgcagttattcc
atagtgtactaactgattttaccctcaaaattggtgtataccacccccaa
aaatgcctaatttggcaattttttcactgaattcctcatttttgatacca
tttcactgggtacgtcttattaacgaccgttcaagagttaaatatttcaa
tcattttccaagtttgttaaaatatctttcatgccttgattgaagaaaaa
aatttgattttttttttgacttttgaaaaaaatgttttgaatttttttgc
ttccggaatttttaaaaacctaaaattttaagtgaaaaattgtaaaatgt
acNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaccccccccccct
gtgggGGCCTCATCGAAACTGCAGAAAAACAATCACTTTAAAGACTGAAT
TAGCATCAGGAGATCAGCAGCAGGATGGTGAGGTCGCAACTAAAGGTGTG
ATGATAAGTCGATTCATAGGATTGAGATGGATTGAGAAAATGTTCATCTT
CAACGTGGCTATCCCCTTAAACGTGAACACTTTTCATTTTACTTTAGGTC
GAGCCTCAGCTAGCCCAATTATCGATTTTTTCATCACTATGCTCTCACTT
GGTGCCAACGGATATAAGAAGTTGCTGCAAGAACGAAAGGTATGTCTAAA
TTAGCCCATTAACTGTGCAATAAGAAGGTTCCATTTATACTGAGGcggaa
aaatcgtctgagacgagtagtttgtaaaatgtgatctgtggaggagatcc
ttatttattgaaaaatgaatggaaataatgctcattttctaaattgctcg
tctcagacAAATATTCGGGGGTcatcaaaagtcacaatgtccgggggtaa
atttccaaaaaaaaatatatcctccacccccccataGGAAAAGCCCAATA
CAAATTGGGGACTTTTGGGAGTTATTGGTATAAGGCTTTTCAGAGAGTCG
CTTTTTAGAAGCctggattttgtgcttgttttaAATGCTTTCAGGATGGT
CACTACCATAAATCCCTAACTTTTCCAACTGATAAACTTCCTCACTTTGC
ATTTCTTCACCTTAACCACGAAAACATATTCTTCCCTACTGAACTTAGCG
ACCTCGGTTTTACATCCCATGAGTTTTTATGTCTAACCACTTATGTTAAT
AACCTCTTCAATGAGGGAGGTAATCTTCCCTAGAAAGCATGTAGAAaatg
tataccgagtttatcgttctacatctgcaatttgagctttactaagctca
tttgacgtcaatcgatacttTGTCAGCCGGATCGAGAGGGAATGAAATGT
CAAGTAGAAAatgtaaaatgattttttttccatcaGGAACTCTATCAATA
TTTACACGACGGTATGAAGCGTATAGCAAAACAATTCAACGAGACCGTCA
TCCCAGCCAAAGAAAATACCATATCAATAGGTAAAAATATCAATCATCAT
TTTATATTTCGGTAatttaatattgaaatttgaaGCAGAATGTTTCCTAT
AAAATGAGGTGTCAAAAACGTGTGACGCAAAAAGGCTACTCAGATCACAA
ATTTGAGCgtccttttctattttttctactTGAAAAAANAAAGGCTACTC
AGATCACAAATTTGAGCgtccttttctattttttctacttgaaaaaaaat
tgatatgcgttttagtagggggccaagccttgggtcccgtgacatctttt
ctacaacctagccatttttagtctattcaaaagaacagtatattacaaga
tatttttgagagcgAGGatgcggattaggcccgggaaaactttttatgac
caaaatagtgacgccataggcaaaactgcaagggaaataAGGGGTAGGga
aatagctgattttcaaaagtcaaaataaacgaaaatgattagtaccatct
gaaagagcatgaaattctgagcaaaagaatgaattacaacaactctctga
ctaaaacacacaaagaaatacagccgcttgaagttcaaaaacataccgac
gtcagtacgatcaagacaagatttgaagtcaaatcgcagtagagctgaca
gttagttggtcttaaagccGCTGTAttcctttgtgtgttttagtcagaga
gttttTGTCACagaaccccaggcttggccccctactatttgAAATGGTTT
ATTGTCTTTTAGTGGCTAAACACATTTTTCAATTCAGACTTTGCCTTCAA
CCTAACCTAGAAATCTAACCTAATTTGATTCAGTCAataggataaatctg
atgttTAATTTTGACTGAATGTATTCCAAGgcaaagttaaaaatttaaag
attaaaaTTAAAGCACTGAAAACGTTGGGCCGTGTAAGCTGTGTATCTTA
CTTAACCTTGTCAATACgcgcttagttaactaggctaccTTCAAAATAGC
TTCATGGAAATTATTGGCTATAAATTTTGCATATTCGTGTTTGTAGTTTG
TCTGTCAGGGgcttaaaaaatgtttaacctTTGGTCTTTACTTTTAGCTC
TGTCACTGCGCTCTCTGGACGAGAGATGTGACGGGCAAAAAAAATCCATC
ACAGAATTTGGTTCTCATCTTTTCAAAAGATCCGTCTCAGGAACGAGGTA
TGCTATGTTTCATGGTTTCAAAgtggtcataacttttgacttgTAAATTA
ATTGTAGTAGATTTACGGTTATTCTTTtattcgattttcgatttttcgaa
GTAAGATAGTTTTTTTCTTGGATCTGCTTACTCAAATAAAgcaaaaactt
tctcggttAAATTCGAACTTCAGTTATTCGAAATCTCAGTTTTTCGAAGA
GATGTCTAAGATCTTTAGTTCTAAATTTGGTCTAAAGTCCCTTCAATCGT
TCGAAAACTTTAAATTAGGAAATCGTAGAAACCTGACAATATACGGATTA
AGTTTCAATTCGATATTTGGTATTATGGTGGGAAGGGAAtgaattttttg
atatttcctCTCTTCAGAGTTGTCACACCCAATGACGAAAAGACGATCGG
TCGTTACCAGTTTATTGGTTGGGGTGCACATTATAGTAATTACCCATGCT
CCTATTTAACCGCCGCTGCTGCCATTGGCGCCACACGACAAGACATCGAC
CTCTTCCTTAAAAGGCTTGAAAAGAATTTTAAAGACTTCTTAAAAGAACC
AAGTAAGAAAGTCTCTTCGTCTAAGAAAGAAACTGATAAATCGGCCACCG
TAAAATTGAACGGGGTCTCgcctactactactactactacgtCGACTAAC
GGCGGACTTATCGAGACTTCGTTTTCGTCATCGTTACCACGAACTAGAAC
TGAAGTGCCGAGAGCGCTCGCGAAAAACCCTTTGCGCGTGATAAATTCAT
GTGGCGTGGAGGGAGATACAAGTAAAACATGGCCGAAACAATCAAAAGAA
TATGCTATGGATGATAGTGCAATACAGAAAAAACGTAACCAATGGTTTAA
TAACGTTGACGGGAAACGTAAATCCCAATCAACTACTTCAGTTGATGAAC
GCGCCCAAGCCGTTCGGGAAGAGCGCACACAGCAGGTAATCACGAAAAAA
GACTTATCTCCAGATAAgatgtcatttttaattgatttatagtgaaagtt
attacttttttatcaagctaaattatttaatttttactATATGAAATTTT
GATTCTTATCTTAAGATGtattcactgacctttatatacccttttgggtt
atcgagacctcaaattttttgaagcatcacgtccactgacctttatatac
cctggaccaagcttctcaatcccagccaagcaaaatctttgatcggagtt
ttttgaaaagtggtaccctaatggcggcactactcgatagcggtgtaaat
acatcgagagcgctaggtctacttttcctcaaattcttttgatgatgtag
cgacgttagacgttaatttttaacattgcaatggcttcttttcgggtacc
aattccaaaaaaactccaatcaaagatggcggatattgcttgttccaggg
atatataaaggtcagtggatatattacattttttttattcggTTCGATAT
TTGTAGCATATATTTTGTAGAAAGGTTATATATTAGTGAGATATAATAGT
GATTATAGAATACCGTATTTATCCTAAAAAAATGCGAAATGTTTAATTAA
AATCATCAATTTACAAACATCGATTAACAATCATATTTTTCTACAATTTT
TAGTGATGATATATGATACGAGTCTATGCTATATACAATAAACAGTGGGG
CGTACGGtccttcggaatttcggaaaacgggcaaaattccttcggtattt
cggaactctgaaattgtttcggtatcgaaAATcgatgaatttttgcttcg
aaattttggtattataaagtttttatcccgccctttttcggaattcgtac
atgaaaaatcaaatttgatgaaaaattagtcaaaacgaaggaaaataccc
caaaaaatcggtatcggaattgcaagtatttttttacagaatttcggAAG
TTTTGGCAAAATCAtttggtatttcggaaatcgcaaaccccgtacgtcCC
CTCCCTACACAGTGTTTGGAAATAATTTCGAACACTGGATAAACTTAAAG
TTCGAGTGTAAAAAAGGCTTTAACTCTCAATTCTATGCCCTCGTTACATT
GGAGTTAACTAGCAATTTCTGTTATTGAATTTAGTCATTTCTGTCTTTAG
AGAAGTTAGCCATTTCTGTGTCAACTTTATTCGAGGTACTATTGACTTCA
TCATTAATTTCCTTTAGAGCAACACCGTTTGTTTCTGGTAAAAAGTAGCA
AAGACATCCTGCAACGATACCAAGTATACCCATGACGTAATTCGGTAGAG
CGATATCAAATTTTTCTAACCCTTTGGACACCCATGGGGCGCTAGCTCCG
CCCACCCAATTTGAAATTGACATTATGCTGAACGCCTCCGATCGGATATT
GGTTGGGTAAACTTCACAAACAAGAACCTCGATAGTATCGAAGCAAAAAG
CGATCCAGAATTTCCCAAATATGCCAACGAAAACACGAATTACGCGGGTC
GTGGTAGACGTATCGGGGATAAAAGGGATTATTACGGTCAAGACTCCGCA
TAGTAAGATCGGTATAGCCGTAGATTTCAATCGACCAAATCGGTTAGCTG
AGTAAGCTGAAAGAATAGCTGCAGGGAATTCAACCAAACTGAGCAGAACA
AAATTTAAATGGATGGAACCAGCGCCTAGATTATCAGCTGCTAGTAAGAG
GCCGTGATAAATCAAAGCTGTCGCATAGAAGCAATAAATTAGGATCACTG
TATGGATAGCCATTCGTTTGCCATTCCGGAATACATCAATGGGGCTGGTC
ATTTTAGCGGCATGTGTACCTGGAGATAACATTACTGTTGGTTCAAGTAC
CTTCCCATTCCAATCTGCCATTCGTCGAAAGATCTCCATAGCCTCGTCCA
CGCGCCCTTTTAACCTCAACCAACGCACTGATTCAGGAACAAATTTGTAG
CTCAGTAGAAACGGTAAATAAGGTAGGGTACAAGCGATAATAAAGTACTT
CCAGTTATCAAGTAAGTACGATTTCAAGGACATCATACAAAGAGCTGCCG
TGTATAGAAACCAGAGCGTGTTACCAGCAATGGCACGATATTTCTCACCT
ACAGTTTCATTTAGCGTGACGTAGTAACACGGATGTACGGACGCTACCAA
GAAGCCGGTCATAAATCGGAACACGATAAGCGATGCAATACTCGGCATGA
AAATCAATAAGAAATTCGTTAAAATAACAAAGAAGAAGCAAACATAAAGA
ATCTTTTTCCGCCCAAAATTGTCACTGTACCACCCAAGAAATACGGCGCC
AAATACTCCGCCAACGAAGGTTATTGAGGTGGCAAGGAAAACTAACCAAT
CATTATCACAAGAGAGATCATATTGAACAATAATAGAGTAATCTTTCGGT
TGAACATATTCCCAATCTGATCTTGATATTCCACAACGGTATTTATCTTC
GTGAGTAAAAGTCCCATTGAATTGACATGCGGTGCTGTTTGCGGCGCATC
TCCACTCTGGCTTTAAGGCTGCAAAGTACATTACATAGTAGACAAAGAAA
TAAGGCCATAACATAAACGCAAAAATGAGGGTTAGGATTTTCTGGAATTT
TCCAAATTCACCGACAAATCCTAAGAAATCGTCTACATTTagattatctt
tttcttttccctCCGACATTTTTCTCTTTCCGTGTCTCCAGTACTACTTG
TCAGAATGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009055XLOC_009055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016202-exon-sc0000231-1491911889:260933..260976TCONS_00016202-exon-sc0000231-1491911889:260933..260976Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1510915933:260933..260976TCONS_00016202-exon-sc0000231-1510915933:260933..260976Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1575043694:260933..260976TCONS_00016202-exon-sc0000231-1575043694:260933..260976Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1491911889:261219..261348TCONS_00016202-exon-sc0000231-1491911889:261219..261348Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1510915933:261219..261348TCONS_00016202-exon-sc0000231-1510915933:261219..261348Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1575043694:261219..261348TCONS_00016202-exon-sc0000231-1575043694:261219..261348Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1491911889:263130..263221TCONS_00016202-exon-sc0000231-1491911889:263130..263221Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1510915933:263130..263221TCONS_00016202-exon-sc0000231-1510915933:263130..263221Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1575043694:263130..263221TCONS_00016202-exon-sc0000231-1575043694:263130..263221Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1491911889:263919..264012TCONS_00016202-exon-sc0000231-1491911889:263919..264012Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1510915933:263919..264012TCONS_00016202-exon-sc0000231-1510915933:263919..264012Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1575043694:263919..264012TCONS_00016202-exon-sc0000231-1575043694:263919..264012Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1491911889:265080..265179TCONS_00016202-exon-sc0000231-1491911889:265080..265179Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1510915933:265080..265179TCONS_00016202-exon-sc0000231-1510915933:265080..265179Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1575043694:265080..265179TCONS_00016202-exon-sc0000231-1575043694:265080..265179Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1491911889:265550..268844TCONS_00016202-exon-sc0000231-1491911889:265550..268844Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1510915933:265550..268844TCONS_00016202-exon-sc0000231-1510915933:265550..268844Clytia hemisphaericaexon
TCONS_00016202-exon-sc0000231-1575043694:265550..268844TCONS_00016202-exon-sc0000231-1575043694:265550..268844Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000231supercontigsc0000231:260933..268844 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.358816	0.444199	0.0633459	0.103968	0	0	0	0	0.130865	0.0646287	0.215152	0.254643	0.837789	0.417815	0.68877	1.01479	0.662662	0.79273	1.24092	1.03395	0.405273	0.482683	0.814657	0.561159	7.4792e-07	0	0.199699	0.266471	0.70262	0.424056
Blast
[Close]
BLAST of TCONS_00016202 vs. Swiss-Prot (Human)
Match: SPCS (O-phosphoseryl-tRNA(Sec) selenium transferase OS=Homo sapiens GN=SEPSECS PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 1.989e-76
Identity = 122/213 (57.28%), Postives = 162/213 (76.06%), Query Frame = 3 
Query:    3 YGIQSSKCMHLLQQANRVGRVDVFVQSTDKNFMVPVGGSIIAGFDKQLIQDIGKMYPGRASASPIIDFFITMLSLGANGYKKLLQERKELYQYLHDGMKRIAKQFNETVIPAKENTISIALSLRSLDERCDGQKKSITEFGSHLFKRSVSGTRVVTPNDEKTIGRYQFIGWGAHYSNYPCSYLTAAAAIGATRQDIDLFLKRLEKNFKDFLKE 641
            YG+QSSKCMHL+QQ  RVGR+D FVQS DKNFMVPVGG+IIAGF+   IQ+I KMYPGRASASP +D  IT+LSLG+NGYKKLL+ERKE++ YL + +K++++ +NE ++    N IS+A++L++LDE  D   K++T+ GS LF R VSG RVV     +T+  Y F G+ +H +NYPC+YL AA+AIG   QD+DLF+KRL++  K   KE
Sbjct:  255 YGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRD---KAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464
The following BLAST results are available for this feature:
BLAST of TCONS_00016202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPCS1.989e-7657.28O-phosphoseryl-tRNA(Sec) selenium transferase OS=H... [more]
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