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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016206 ID=TCONS_00016206|Name=TCONS_00016206|organism=Clytia hemisphaerica|type=transcript|length=1807bp
aaattttagatgttctaatgataaaaaaacgtgtacatcagtaaagttta
atttttatttgaaagatttATCTCATCGCCATCTGTTGTACTTTTCAGCC
CTTTTCTGGAAACATAAACATACTAAAGTTAGCATgatgaagtaaaaaat
ttgaaattattttacaattattttttataattttaaagtAGGCGATTGTG
TATTATTACAAAAAATGTTAGAGAAATATACTAATACAATAATAATAAGA
TAAGTTTATTCACAATTATTTGCACATTGAAAAGATTATTGATGAGAATA
TTTTTTAACTCGTTGGAAAAATTTTGTGCTGAGatgtaaatttatcaaat
tcgCAACAATTAAATTAGttcattaaaaaagaattgaCAAAGAAAAACAC
AGTgcttaaaaaaattgtaatatttaCAACATGAAATAATTTAAAGGTgc
aatatttttatctttttttataaaataacaattttgaaatttttattttc
aaaaaaagaaataaatgagAACCTCTCTTTTtataattaaaatttaaata
aattattattttcaaatgCCTTGAAAAGGTATGTCAcagcatagtcatta
taaaaaaactggTCTTGAAGGCTTTtgcctctttttttttttgataaaag
atgGAGATTATGTACCAAAatctatttattttgaaaactttttgatcatg
tgattcgaaaataaaccaatcccaagaggagattttataacaaaagaaaa
ttgaacaaaaagccaAAACAATACATTACCAGACCgtggttttttataat
gactatggtcaCAGTTGTGAACAGATACTTTCTGAACAGTTGGCAAGACA
ATTCATTAGTGTTATGTCAGCGTTCTTCCTCCTATCACAATTTGTATAAG
GCTTTACAGCTCCTTTTTGTGTGAACCTTGATCTCGTTCCTAATCTATCT
TtatcccaacacgcgattttttATCACAGCATCGAggaggaaaaagccgt
ggtaAACGTAACGTAAGCCTGGAATACAAGGCGACGAGGTTGTTTGAATc
tttaactttcgtttttttaagataaaaatatcaaatgaaatATCTCCGAA
TGACGTATAGGAAAATAACTTATGCTTCGGTATGATCCCCATCGTTACTT
GTAACGCTGAATTGTCGTGTGCTTTCTAACGTGATTTTATTATTGTTATC
TAGGTTTTTGATGGGTGAGTTTGACAACCGAGGTGTTGTCTTATTGATAT
CACCATCAATATCAGGAAGCTCGTAATCCGCATTTTTCATATCCGCCAAA
CTTACACTATGGGAGGGCGTCTCCGGTGGTGAACTTCGATAGCTGGGCGG
GTAGCTTGGTAATGATCCAGGTTCATATTTACCTAAATCGTACGGATCAG
TGTATTGGGGCGTTACGAAATCAGTAATGGGCGGTTTATTCATATTATCG
CCATCATCGGTGAATTGGACCCAATCTCGTTGTGGTGGTGCCTTTTTGAT
ATCTGGTTCTTCATAAACCGCCCCTACAGTAGCGCCCTCAGCAGGCGGGA
ACTTGGCGCCTGCTATTTCAGCATAATCTCCAAGGGTAGCAGGAAGTGGC
ATGGGTGAGGCGTATTCGCCAAGGGAAGTTGAAACGCCCGCTTCTTGTGG
TGTCGTGTAATGGTTTTGTTCGACAGCTGGGCGGTTATTGCTTTCCGGTA
ATTGAACTTTGTCACTATGGAGATCATCATAGAGACGGTTTTCGAAAGAG
ACTGGACCGAGTTCGTTAGCACCACATGTTGTAGGAGCTTCTTTTGTAAA
TAATCGC Run BLAST on NCBI transcript from alignment at sc0000231:330629..332518+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016206 ID=TCONS_00016206|Name=TCONS_00016206|organism=Clytia hemisphaerica|type=transcript|length=1890bp|location=Sequence derived from alignment at sc0000231:330629..332518+ (Clytia hemisphaerica)
aaattttagatgttctaatgataaaaaaacgtgtacatcagtaaagttta
atttttatttgaaagatttATCTCATCGCCATCTGTTGTACTTTTCAGCC
CTTTTCTGGAAACATAAACATACTAAAGTTAGCATgatgaagtaaaaaat
ttgaaattattttacaattattttttataattttaaagtAGGCGATTGTG
TATTATTACAAAAAATGTTAGAGAAATATACTAATACAATAATAATAAGA
TAAGTTTATTCACAATTATTTGCACATTGAAAAGATTATTGATGAGAATA
TTTTTTAACTCGTTGGAAAAATTTTGTGCTGAGatgtaaatttatcaaat
tcgCAACAATTAAATTAGttcattaaaaaagaattgaCAAAGAAAAACAC
AGTgcttaaaaaaattgtaatatttaCAACATGAAATAATTTAAAGGTgc
aatatttttatctttttttataaaataacaattttgaaatttttattttc
aaaaaaagaaataaatgagAACCTCTCTTTTtataattaaaatttaaata
aattattattttcaaatgCCTTGAAAAGGTATGTCAcagcatagtcatta
taaaaaaactggTCTTGAAGGCTTTtgcctctttttttttttgataaaag
atgGAGATTATGTACCAAAatctatttattttgaaaactttttgatcatg
tgattcgaaaataaaccaatcccaagaggagattttataacaaaagaaaa
ttgaacaaaaagccaAAACAATACATTACCAGACCgtggttttttataat
gactatggtcaCAGTTGTGAACAGATACTTTCTGAACAGTTGGCAAGACA
ATTCATTAGTGTTATGTCAGCGTTCTTCCTCCTATCACAATTTGTATAAG
GCTTTACAGCTCCTTTTTGTGTGAACCTTGATCTCGTTCCTAATCTATCT
TtatcccaacacgcgattttttATCACAGCATCGAggaggaaaaagccgt
ggtaAACGTAACGTAAGCCTGGAATACAAGGCGACGAGGTTGTTTGAATc
tttaactttcgtttttttaagataaaaatatcaaatgaaatATCTCCGAA
TGACGTATAGGAAAATAACTTATGCTTCGGTATGATCCCCATCGTTACTT
GTAACGCTGAATTGTCGTGTGCTTTCTAACGTGATTTTATTATTGTTATC
TAGGTTTTTGATGGGTGAGTNCCATCGTTACTTGTAACGCTGAATTGTCG
TGTGCTTTCTAACGTGATTTTATTATTGTCATTTAGGTTTTTGATGGGTG
AGTTTGACAACCGAGGTGTTGTCTTATTGATATCACCATCAATATCAGGA
AGCTCGTAATCCGCATTTTTCATATCCGCCAAACTTACACTATGGGAGGG
CGTCTCCGGTGGTGAACTTCGATAGCTGGGCGGGTAGCTTGGTAATGATC
CAGGTTCATATTTACCTAAATCGTACGGATCAGTGTATTGGGGCGTTACG
AAATCAGTAATGGGCGGTTTATTCATATTATCGCCATCATCGGTGAATTG
GACCCAATCTCGTTGTGGTGGTGCCTTTTTGATATCTGGTTCTTCATAAA
CCGCCCCTACAGTAGCGCCCTCAGCAGGCGGGAACTTGGCGCCTGCTATT
TCAGCATAATCTCCAAGGGTAGCAGGAAGTGGCATGGGTGAGGCGTATTC
GCCAAGGGAAGTTGAAACGCCCGCTTCTTGTGGTGTCGTGTAATGGTTTT
GTTCGACAGCTGGGCGGTTATTGCTTTCCGGTAATTGAACTTTGTCACTA
TGGAGATCATCATAGAGACGGTTTTCGAAAGAGACTGGACCGAGTTCGTT
AGCACCACATGTTGTAGGAGCTTCTTTTGTAAATAATCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016206-exon-sc0000231-1491911889:330629..331831 | TCONS_00016206-exon-sc0000231-1491911889:330629..331831 | Clytia hemisphaerica | exon |
| TCONS_00016206-exon-sc0000231-1510915933:330629..331831 | TCONS_00016206-exon-sc0000231-1510915933:330629..331831 | Clytia hemisphaerica | exon |
| TCONS_00016206-exon-sc0000231-1575043694:330629..331831 | TCONS_00016206-exon-sc0000231-1575043694:330629..331831 | Clytia hemisphaerica | exon |
| TCONS_00016206-exon-sc0000231-1491911889:331915..332518 | TCONS_00016206-exon-sc0000231-1491911889:331915..332518 | Clytia hemisphaerica | exon |
| TCONS_00016206-exon-sc0000231-1510915933:331915..332518 | TCONS_00016206-exon-sc0000231-1510915933:331915..332518 | Clytia hemisphaerica | exon |
| TCONS_00016206-exon-sc0000231-1575043694:331915..332518 | TCONS_00016206-exon-sc0000231-1575043694:331915..332518 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000231 | supercontig | sc0000231:330629..332518 + |
Blast
The following BLAST results are available for this feature:
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