TCONS_00016239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016239
Unique NameTCONS_00016239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016239 ID=TCONS_00016239|Name=TCONS_00016239|organism=Clytia hemisphaerica|type=transcript|length=831bp
AATTGACAAAGAAAGGATCAAGCactaaaaaatgttttacaaaAGGTTCA
AACTCGAAACCGTTTGATGTCAATAAAGGCCAGTAGTATGCTGATGGCCA
CAAGGGGATAAATAGTATGCCTTTACCTTTACAATTTCTTAAATGTTTAA
TTGTTTTTCCTACTAATGCTATTGGAGGACAAAGCCAATTAATTTCATGG
TTTCCCCAGTGGCACGAAAAAGAATTAACTGCAGAAGTACCAGGACAATA
TTCTTTGGAGTTaaaccgagaaaattttttgtttaagctGTCTGAAAATC
GGTCGATGGTAACCTGTCCGTAGTTTTTAAGTACATAAtcaaaagtttca
ttgtcaattgACCAGTTGTCTGTATCGTTGGTCTTTGAGATTTTATCGGC
AATTTCGTTTAACTCTCTAGGGATCCAAGTAGGGTAAATTTCAATGTTGG
ACGATaaacaaatgttaaaatttcgATTGCAAGATTTTGCAAGTGTTGCT
TTGTGCTACCTCGATTTATGATTCTACATATATTATTATTGTCGGTAAAC
CACTCAATATTTTCGTTTTCTAAGATTTTAGGAAATGATAGCAAAATGTA
TTTTACTGCAAGAAGTTCGCAGTAAGTCGAGCTGGTTTGCCGTTCGGTTC
GGTCAAAGTTCCCTCTAGCTATGATGTTACCGAGTTTTTCCACAACATAA
CCCCCGGTAACCGGTTTCACTTGCATCCAAAAAAACGATTTTTGTGACTT
CAGGTTGTGTGTTAATTCTAAAGCTCTTCGTGACTTCTAAATTTTCCTTC
CAAAATTCGAGCTCTTGTCTTACATCAAANN
Run BLAST on NCBI

protein sequence of TCONS_00016239-protein

>TCONS_00016239-protein ID=TCONS_00016239-protein|Name=TCONS_00016239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MQVKPVTGGYVVEKLGNIIARGNFDRTERQTSSTYCELLAVKYILLSFPK
ILENENIEWFTDNNNICRIINRGSTKQHLQNLAIEILTFVYRPTLKFTLL
GSLES
Run BLAST on NCBI

transcript from alignment at sc0000231:109410..110240

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016239 ID=TCONS_00016239|Name=TCONS_00016239|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at sc0000231:109410..110240 (Clytia hemisphaerica)
NNTTTGATGTAAGACAAGAGCTCGAATTTTGGAAGGAAAATTTAGAAGTC
ACGAAGAGCTTTAGAATTAACACACAACCTGAAGTCACAAAAATCGTTTT
TTTGGATGCAAGTGAAACCGGTTACCGGGGGTTATGTTGTGGAAAAACTC
GGTAACATCATAGCTAGAGGGAACTTTGACCGAACCGAACGGCAAACCAG
CTCGACTTACTGCGAACTTCTTGCAGTAAAATACATTTTGCTATCATTTC
CTAAAATCTTAGAAAACGAAAATATTGAGTGGTTTACCGACAATAATAAT
ATATGTAGAATCATAAATCGAGGTAGCACAAAGCAACACTTGCAAAATCT
TGCAATcgaaattttaacatttgtttATCGTCCAACATTGAAATTTACCC
TACTTGGATCCCTAGAGAGTTAAACGAAATTGCCGATAAAATCTCAAAGA
CCAACGATACAGACAACTGGTcaattgacaatgaaacttttgaTTATGTA
CTTAAAAACTACGGACAGGTTACCATCGACCGATTTTCAGACagcttaaa
caaaaaattttctcggtttAACTCCAAAGAATATTGTCCTGGTACTTCTG
CAGTTAATTCTTTTTCGTGCCACTGGGGAAACCATGAAATTAATTGGCTT
TGTCCTCCAATAGCATTAGTAGGAAAAACAATTAAACATTTAAGAAATTG
TAAAGGTAAAGGCATACTATTTATCCCCTTGTGGCCATCAGCATACTACT
GGCCTTTATTGACATCAAACGGTTTCGAGTTTGAACCTtttgtaaaacat
tttttagtGCTTGATCCTTTCTTTGTCAATT

Coding sequence (CDS) from alignment at sc0000231:109410..110240

>TCONS_00016239 ID=TCONS_00016239|Name=TCONS_00016239|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000231:109410..110240 (Clytia hemisphaerica)
ATGCAAGTGAAACCGGTTACCGGGGGTTATGTTGTGGAAAAACTCGGTAA
CATCATAGCTAGAGGGAACTTTGACCGAACCGAACGGCAAACCAGCTCGA
CTTACTGCGAACTTCTTGCAGTAAAATACATTTTGCTATCATTTCCTAAA
ATCTTAGAAAACGAAAATATTGAGTGGTTTACCGACAATAATAATATATG
TAGAATCATAAATCGAGGTAGCACAAAGCAACACTTGCAAAATCTTGCAA
TcgaaattttaacatttgtttATCGTCCAACATTGAAATTTACCCTACTT
GGATCCCTAGAGAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009069XLOC_009069Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016239-proteinTCONS_00016239-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016239-exon-sc0000231-1491911889:109410..110240TCONS_00016239-exon-sc0000231-1491911889:109410..110240Clytia hemisphaericaexon
TCONS_00016239-exon-sc0000231-1510915933:109410..110240TCONS_00016239-exon-sc0000231-1510915933:109410..110240Clytia hemisphaericaexon
TCONS_00016239-exon-sc0000231-1575043694:109410..110240TCONS_00016239-exon-sc0000231-1575043694:109410..110240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000231supercontigsc0000231:109410..110240 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.2364	16.9437	7.1553	3.89747	0.724335	0.637212	0.883759	1.30323	0.838889	1.22202	1.32157	1.39412	6.24207	7.28506	8.40123	8.807	2.00442	2.57595	0.882629	1.21373	0.60839	0.534193	10.8402	13.3269	1.70332	2.87036	2.53294	2.39912	10.7493	8.24824
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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