TCONS_00016246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016246
Unique NameTCONS_00016246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016246 ID=TCONS_00016246|Name=TCONS_00016246|organism=Clytia hemisphaerica|type=transcript|length=1378bp
AGGACATGTATAGGCGAAGACGAAGGCGTAAAGTTTTATTCGCATGTCTC
ATTCTGGTATCCTTGCTTTGCTTCAATATGAATTTGTTCATCGACGTGGA
CAATAAAATCATATcacctttgaaaaatttcggACAAAACATGCTCAGAG
GTTCTAAAAAACACCCATTTGTGATGCCTGAAAACCATACACCAAACATC
AAGCTTTTGAATTACGACGATATCGATCCTTTCCATGGAGACATTATGTT
TTTGGTTACATCGCATATCCGTTTTCAAATCAGGAGAGATTCTATACGTA
GTAGTTGGGGTGACGCTTCACGGTTTACTAAACATCGTCTAAAATACAAT
GGTGTCAATTACAAGGTATATTTTCAGACTGGTTACCTCGATGGTGCTTT
TAAAGCAGCTAAACTTGAATCTAAAATTCACAGGGATATGTTGATTAGTA
ATAGGACTGAGGATTATTGGGACCTATCCAGGAGAGTGATGCTTGGATTT
ATTTGGTCACTGGAGCATTGTAGTTTTGAATACCTTATTAAAACCGATGA
TGATGTTTTCTATAATATACCGAATCTTTTCCAGCTCATTTATGAAGATC
CATTTATATTAGCACACAAGGATCGTGTTTTTGCTGGATCTATTTACCAA
ATAACGCGTAGATCAAGCAGAgacttattttcaaaatggtatgTGCCAAA
AGAGGAATGGCCGGCTGACGAATACCCATATTTTGCAACTGGAATGGCAA
ATATTTTATCTCGTTTAGTTGTTGAGAGAATGCGTCCACACTTTGACTGG
GTGAACCCATTCCGATTAGATGACGTTTACATAGGAATGTTAGTAAATCG
GGCTAATGTTCCCCGTATGGGGATTCGAAAAATAAAAGTCATGAATGAGG
AATTTTATGGAAGGGGTTCGGCTAAAAAATGCTTTTATCTCAAACACTCA
ATAACTCAACATCAAGTGACTAAAGGCTGGTGTATGGAAGGACTTACAGC
AAAAAGTGTAATAACATAGCACAAAGTAGTATTTTTATACCTATATGCTG
GAAATTACACCCCTGTagcacagacccggtgggaacCTCGCCCCAACTAT
actgaaaattttgaccaaaatttcgtccctaattgaaaaatatacccttt
aatttcagccccattaaaaaattgactttattttcatccccattaaaaat
gtggcgaaaaaaatatccccactgtgggaacGCTGCTTGATTACTTTTAA
GGaactttttataaatttttttattagatcTAGATAGAATTTATTATGAA
AGataatttttaaagaatttagttaattttaaaatactcGATCAAGAGAT
TGTTTATTGTATATCTGTTTATATGGAG
Run BLAST on NCBI

protein sequence of TCONS_00016246-protein

>TCONS_00016246-protein ID=TCONS_00016246-protein|Name=TCONS_00016246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
DMYRRRRRRKVLFACLILVSLLCFNMNLFIDVDNKIISPLKNFGQNMLRG
SKKHPFVMPENHTPNIKLLNYDDIDPFHGDIMFLVTSHIRFQIRRDSIRS
SWGDASRFTKHRLKYNGVNYKVYFQTGYLDGAFKAAKLESKIHRDMLISN
RTEDYWDLSRRVMLGFIWSLEHCSFEYLIKTDDDVFYNIPNLFQLIYEDP
FILAHKDRVFAGSIYQITRRSSRDLFSKWYVPKEEWPADEYPYFATGMAN
ILSRLVVERMRPHFDWVNPFRLDDVYIGMLVNRANVPRMGIRKIKVMNEE
FYGRGSAKKCFYLKHSITQHQVTKGWCMEGLTAKSVIT
Run BLAST on NCBI

transcript from alignment at sc0000231:181553..182930

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016246 ID=TCONS_00016246|Name=TCONS_00016246|organism=Clytia hemisphaerica|type=transcript|length=1378bp|location=Sequence derived from alignment at sc0000231:181553..182930 (Clytia hemisphaerica)
CTCCATATAAACAGATATACAATAAACAATCTCTTGATCgagtattttaa
aattaactaaattctttaaaaattatCTTTCATAATAAATTCTATCTAga
tctaataaaaaaatttataaaaagttCCTTAAAAGTAATCAAGCAGCgtt
cccacagtggggatatttttttcgccacatttttaatggggatgaaaata
aagtcaattttttaatggggctgaaattaaagggtatatttttcaattag
ggacgaaattttggtcaaaattttcagtATAGTTGGGGCGAGgttcccac
cgggtctgtgctACAGGGGTGTAATTTCCAGCATATAGGTATAAAAATAC
TACTTTGTGCTATGTTATTACACTTTTTGCTGTAAGTCCTTCCATACACC
AGCCTTTAGTCACTTGATGTTGAGTTATTGAGTGTTTGAGATAAAAGCAT
TTTTTAGCCGAACCCCTTCCATAAAATTCCTCATTCATGACTTTTATTTT
TCGAATCCCCATACGGGGAACATTAGCCCGATTTACTAACATTCCTATGT
AAACGTCATCTAATCGGAATGGGTTCACCCAGTCAAAGTGTGGACGCATT
CTCTCAACAACTAAACGAGATAAAATATTTGCCATTCCAGTTGCAAAATA
TGGGTATTCGTCAGCCGGCCATTCCTCTTTTGGCAcataccattttgaaa
ataagtcTCTGCTTGATCTACGCGTTATTTGGTAAATAGATCCAGCAAAA
ACACGATCCTTGTGTGCTAATATAAATGGATCTTCATAAATGAGCTGGAA
AAGATTCGGTATATTATAGAAAACATCATCATCGGTTTTAATAAGGTATT
CAAAACTACAATGCTCCAGTGACCAAATAAATCCAAGCATCACTCTCCTG
GATAGGTCCCAATAATCCTCAGTCCTATTACTAATCAACATATCCCTGTG
AATTTTAGATTCAAGTTTAGCTGCTTTAAAAGCACCATCGAGGTAACCAG
TCTGAAAATATACCTTGTAATTGACACCATTGTATTTTAGACGATGTTTA
GTAAACCGTGAAGCGTCACCCCAACTACTACGTATAGAATCTCTCCTGAT
TTGAAAACGGATATGCGATGTAACCAAAAACATAATGTCTCCATGGAAAG
GATCGATATCGTCGTAATTCAAAAGCTTGATGTTTGGTGTATGGTTTTCA
GGCATCACAAATGGGTGTTTTTTAGAACCTCTGAGCATGTTTTGTccgaa
atttttcaaaggtgATATGATTTTATTGTCCACGTCGATGAACAAATTCA
TATTGAAGCAAAGCAAGGATACCAGAATGAGACATGCGAATAAAACTTTA
CGCCTTCGTCTTCGCCTATACATGTCCT

Coding sequence (CDS) from alignment at sc0000231:181553..182930

>TCONS_00016246 ID=TCONS_00016246|Name=TCONS_00016246|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at sc0000231:181553..182930 (Clytia hemisphaerica)
CTATGTTATTACACTTTTTGCTGTAAGTCCTTCCATACACCAGCCTTTAG
TCACTTGATGTTGAGTTATTGAGTGTTTGAGATAAAAGCATTTTTTAGCC
GAACCCCTTCCATAAAATTCCTCATTCATGACTTTTATTTTTCGAATCCC
CATACGGGGAACATTAGCCCGATTTACTAACATTCCTATGTAAACGTCAT
CTAATCGGAATGGGTTCACCCAGTCAAAGTGTGGACGCATTCTCTCAACA
ACTAAACGAGATAAAATATTTGCCATTCCAGTTGCAAAATATGGGTATTC
GTCAGCCGGCCATTCCTCTTTTGGCAcataccattttgaaaataagtcTC
TGCTTGATCTACGCGTTATTTGGTAAATAGATCCAGCAAAAACACGATCC
TTGTGTGCTAATATAAATGGATCTTCATAAATGAGCTGGAAAAGATTCGG
TATATTATAGAAAACATCATCATCGGTTTTAATAAGGTATTCAAAACTAC
AATGCTCCAGTGACCAAATAAATCCAAGCATCACTCTCCTGGATAGGTCC
CAATAATCCTCAGTCCTATTACTAATCAACATATCCCTGTGAATTTTAGA
TTCAAGTTTAGCTGCTTTAAAAGCACCATCGAGGTAACCAGTCTGAAAAT
ATACCTTGTAATTGACACCATTGTATTTTAGACGATGTTTAGTAAACCGT
GAAGCGTCACCCCAACTACTACGTATAGAATCTCTCCTGATTTGAAAACG
GATATGCGATGTAACCAAAAACATAATGTCTCCATGGAAAGGATCGATAT
CGTCGTAATTCAAAAGCTTGATGTTTGGTGTATGGTTTTCAGGCATCACA
AATGGGTGTTTTTTAGAACCTCTGAGCATGTTTTGTccgaaatttttcaa
aggtgATATGATTTTATTGTCCACGTCGATGAACAAATTCATATTGAAGC
AAAGCAAGGATACCAGAATGAGACATGCGAATAAAACTTTACGCCTTCGT
CTTCGCCTATACATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009076XLOC_009076Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016246-proteinTCONS_00016246-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016246-exon-sc0000231-1491911889:181553..182930TCONS_00016246-exon-sc0000231-1491911889:181553..182930Clytia hemisphaericaexon
TCONS_00016246-exon-sc0000231-1510915933:181553..182930TCONS_00016246-exon-sc0000231-1510915933:181553..182930Clytia hemisphaericaexon
TCONS_00016246-exon-sc0000231-1575043694:181553..182930TCONS_00016246-exon-sc0000231-1575043694:181553..182930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000231supercontigsc0000231:181553..182930 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.602349	0.605803	0.126796	0.179651	0.108723	0.333642	0.507636	0.433192	0.0618245	0.17355	0.0631554	0.132207	1.28122	1.19708	1.38314	1.08588	0.485557	1.02538	2.40364	1.25507	0.951291	0.720034	2.44171	2.9195	1.32992	1.68191	4.87149	6.67874	0.981471	0.665135
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002659Glyco_trans_31
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008378galactosyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0008378 galactosyltransferase activity
Blast
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BLAST of TCONS_00016246 vs. Swiss-Prot (Human)
Match: B3GT5 (Beta-1,3-galactosyltransferase 5 OS=Homo sapiens GN=B3GALT5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.822e-20
Identity = 70/282 (24.82%), Postives = 133/282 (47.16%), Query Frame = 3 
Query:   24 RRKVLFACLILVSLLCFNMNLFIDVDNKIISPLKNFGQNMLRGSKKHPFVMPENHTPNIKLLNYDDIDPFHGDIMFLVTSHIRFQIRRDSIRSSWGDASRFTKHRLKYNGVNYKVYFQTGYLDGAFKAAKL--ESKIHRDMLISNRTEDYWDLSRRVMLGFIWSLEHC-SFEYLIKTDDDVFYNIPNLFQLIYEDPFILAHKDRVFAGSIYQITRRSSRDLFSKWYVPKEEWPADEYPYFATGMANILSRLVVERMRPHFDWVNPFRLDDVYIGMLVNRANV 860
            + ++++ CL+++  LC   +++       ++P K   Q+ +     +   +P+         +     PF   ++ LVTS  +    R +IR +WG      K R+   G   K +F  G    A +  ++  ES+ H D++  +  + Y++L+ + M+G  W    C    +++KTD D+F N+  L +L+ +         R F G + ++     R  FSKW+V K E+P D YP F +G   + S  V  ++      V   +L+DV++G+ + R N+
Sbjct:    5 KMRLMYICLLVLGALCLYFSMYS------LNPFKE--QSFVYKKDGNFLKLPDT--------DCRQTPPF---LVLLVTSSHKQLAERMAIRQTWG------KERM-VKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKK----NRTTRFFTGFL-KLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQVYNVSKSVPYIKLEDVFVGLCLERLNI 255
The following BLAST results are available for this feature:
BLAST of TCONS_00016246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B3GT56.822e-2024.82Beta-1,3-galactosyltransferase 5 OS=Homo sapiens G... [more]
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